Predicting Adsorbate-Solvent Interaction Energies in Zeolite Pores Using Convolutional Neural Networks with Attention Mechanisms

IF 6.4 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2026-10-12 Epub Date: 2026-09-30 DOI:10.1021/acs.jcim.6c02080
Jiexin Shi, Xiuting Chen, Rachel B. Getman
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Abstract

Solvent effects play a critical role in determining reaction thermodynamics and kinetics in liquid-phase heterogeneous catalysis, particularly in confined nanoporous environments such as zeolite pores. However, accurate prediction of solvation thermodynamics remains computationally prohibitive due to the need for extensive first-principles calculations on diverse solvent configurations. In this work, we present an attention-enhanced three-dimensional convolutional neural network (3D-CNN) framework to predict solvation interaction energies (ΔEint) of adsorbates in Ti-faujasite (Ti-FAU) zeolite pores. Molecular dynamics (MD) snapshots of C1–C3 oxygenates in aqueous and water–methanol solvent environments are transformed into multichannel voxel grid representations that encode spatially resolved atomistic information. The 3D-CNN architecture incorporates separate adsorbate and solvent branches and employs convolutional block attention modules to dynamically prioritize spatial regions and feature channels relevant to adsorbate–solvent interactions. Trained on density functional theory (DFT)-derived interaction energies from a multiscale modeling workflow, the model achieves a mean absolute error of 0.08 eV for individual configurations and 0.04 eV for ensemble-averaged solvation energies, approaching DFT accuracy while substantially reducing computational cost. Cross-validation (CV) using simulation-system, solvent-composition, and pore-type splits demonstrates predictive performance on held-out systems within the represented chemical domain and across the solvent and pore conditions considered in this study. Analysis of spatial attention maps and feature attributions reveals that the model emphasizes adsorbate-proximal solvent structures and hydrogen-bonding interactions, consistent with physical intuition. This framework enables efficient and interpretable prediction of solvation interaction energies in confined systems and provides a scalable pathway for mapping structural information sampled from force-field-MD to DFT targets.

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利用卷积神经网络预测沸石孔隙中吸附剂-溶剂相互作用能
在液相非均相催化中,溶剂效应在决定反应热力学和动力学中起着关键作用,特别是在沸石孔等受限纳米孔环境中。然而,由于需要对不同溶剂配置进行广泛的第一性原理计算,精确预测溶剂化热力学仍然是计算上的禁忌。在这项工作中,我们提出了一个注意力增强的三维卷积神经网络(3D-CNN)框架来预测钛-faujasite (Ti-FAU)沸石孔隙中吸附物的溶剂化相互作用能(ΔEint)。在水和水-甲醇溶剂环境中,C1-C3氧合物的分子动力学(MD)快照被转换成多通道体素网格表示,编码空间分辨的原子信息。3D-CNN架构采用独立的吸附物和溶剂分支,并采用卷积块关注模块来动态优先考虑与吸附物-溶剂相互作用相关的空间区域和特征通道。该模型基于密度泛函理论(DFT)从多尺度建模工作流中导出的相互作用能量进行训练,单个构型的平均绝对误差为0.08 eV,整体平均溶剂化能的平均绝对误差为0.04 eV,接近DFT精度,同时大大降低了计算成本。交叉验证(CV)使用模拟系统、溶剂组成和孔隙类型划分,证明了在所代表的化学领域以及本研究中所考虑的溶剂和孔隙条件下,持留系统的预测性能。空间注意图和特征归因分析表明,该模型强调吸附-近端溶剂结构和氢键相互作用,与物理直觉一致。该框架能够有效和可解释地预测受限体系中的溶剂化相互作用能,并为从力场md采样到DFT目标的结构信息映射提供了可扩展的途径。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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