Reducing Data Requirements for Sequence–Property Prediction in Copolymer Compatibilizers via Deep Neural Network Tuning

IF 6.4 2区 化学 Q1 CHEMISTRY, MEDICINAL Journal of Chemical Information and Modeling Pub Date : 2026-10-20 DOI:10.1021/acs.jcim.6c00178
Nishat Nayla Labiba,Md Mushfiqul Islam,Lawrence O. Hall,David S. Simmons
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Abstract

Synthetic sequence-controlled polymers promise to transform polymer science by combining the chemical versatility of synthetic polymers with the precise sequence-mediated functionality of biological proteins. However, design of these materials has proven extraordinarily challenging, because they lack the massive data sets of closely related evolved molecules that accelerate design of proteins. Here, we report on an Artificial Intelligence strategy to reduce the amount of data necessary to accelerate the design of these materials. We focus on data connecting the repeat-unit-sequence of a model compatibilizer molecule to its ability to reduce the interfacial tension between distinct polymer domains. The optimal sequence of these molecules, which are essential for applications such as mixed-waste polymer recycling, depends strongly on variables such as concentration and chemical details of the polymer. We show that a deep neural network trained on low-fidelity data for sequence/interfacial tension relations at one set of conditions can be rapidly tuned to make higher-fidelity predictions at a distinct set of conditions, requiring far less data than would ordinarily be needed within the data sets we have tested. This priming using a pretrained model and then tuning it on unseen data from a different data set approach could allow a single low-fidelity parent data set to accelerate prediction and design in a larger set of related systems.

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深度神经网络调优降低共聚物增容剂序列性质预测的数据要求
合成序列控制聚合物通过将合成聚合物的化学多功能性与生物蛋白的精确序列介导功能相结合,有望改变聚合物科学。然而,这些材料的设计已经被证明是非常具有挑战性的,因为它们缺乏大量的密切相关的进化分子的数据集,这些数据集可以加速蛋白质的设计。在这里,我们报告了一种人工智能策略,以减少加速这些材料设计所需的数据量。我们专注于连接模型相容剂分子的重复单元序列与其降低不同聚合物域之间界面张力的能力的数据。这些分子的最佳序列对混合废物聚合物回收等应用至关重要,但在很大程度上取决于聚合物的浓度和化学细节等变量。我们表明,在一组条件下对序列/界面张力关系的低保真度数据进行训练的深度神经网络可以快速调整,在一组不同的条件下做出更高保真度的预测,所需的数据远少于我们测试过的数据集中通常需要的数据。这种启动使用预训练模型,然后在不同数据集方法的未见数据上进行调整,可以允许单个低保真父数据集在更大的相关系统中加速预测和设计。
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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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Reducing Data Requirements for Sequence–Property Prediction in Copolymer Compatibilizers via Deep Neural Network Tuning GLH2Syn: Global–Local Dual-View Heterogeneous Hypergraph Learning for Drug Synergy Prediction Structure Prototype Learning for Federated Molecular Property Prediction under Scaffold Heterogeneity Benchmarking Protein–Ligand Cofolding Models: Correct Ligand Placement Is Decoupled From Accurate Protein Conformation Synergy-Guided Molecular Redesign of Predicted P-Glycoprotein Substrates toward Synthetically Feasible Non-Substrates
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