Mining buried plant trait data from the Global Biodiversity Information Facility (GBIF): Comparison and integration with multiple plant trait databases.

IF 3.5 3区 生物学 Q2 PLANT SCIENCES Applications in Plant Sciences Pub Date : 2026-10-14 DOI:10.1002/aps3.70083
Takuro Katori, Michio Oguro
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引用次数: 0

Abstract

Premise: Despite the availability of several plant trait databases, significant traits remain undocumented for a substantial number of species. To address this issue, the current study explored digital text from the Global Biodiversity Information Facility (GBIF) as an innovative source of plant trait information and evaluated its capacity to reduce existing deficiencies.

Methods: Data were gathered on lifespan (LS), growth form (GF), flower color (FC), and maximum plant height (PH max ) for vascular plants from GBIF and four common plant trait databases. The resulting dataset was used to evaluate the novelty and consistency of trait values derived from GBIF's digital text relative to those from other databases.

Results: Incorporation of GBIF-extracted trait data led to increases of 1.2-, 1.2-, 5.5-, and 2.7-fold in the number of species with documented LS, GF, FC, and PH max traits, respectively. GBIF's trait data demonstrated high congruence with other databases, except in the case of FC. Additionally, a comprehensive dataset compiling these trait values from GBIF and the four databases was created, offering a valuable resource for future plant trait research.

Discussion: Our findings suggest that digital text in GBIF represents a significant source of plant trait information and can effectively help bridge information gaps.

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全球生物多样性信息设施(GBIF)埋藏植物性状数据挖掘:与多个植物性状数据库的比较与整合
前提:尽管有几个植物性状数据库,但大量物种的重要性状仍未记录。为了解决这一问题,本研究探索了全球生物多样性信息设施(GBIF)的数字文本作为植物性状信息的创新来源,并评估了其减少现有缺陷的能力。方法:从GBIF和4个常用植物性状数据库中收集维管植物的寿命(LS)、生长形态(GF)、花色(FC)和最大株高(PH max)数据。结果数据集用于评估GBIF数字文本相对于其他数据库的特征值的新颖性和一致性。结果:结合gbif提取的性状数据,具有LS、GF、FC和PH max性状的物种数量分别增加了1.2倍、1.2倍、5.5倍和2.7倍。除FC外,GBIF的特征数据与其他数据库具有较高的一致性。此外,还将GBIF和4个数据库的性状值进行了综合整理,为今后的植物性状研究提供了有价值的资源。讨论:我们的研究结果表明,GBIF中的数字文本代表了植物性状信息的重要来源,可以有效地帮助弥合信息差距。
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来源期刊
CiteScore
7.30
自引率
0.00%
发文量
50
审稿时长
12 weeks
期刊介绍: Applications in Plant Sciences (APPS) is a monthly, peer-reviewed, open access journal promoting the rapid dissemination of newly developed, innovative tools and protocols in all areas of the plant sciences, including genetics, structure, function, development, evolution, systematics, and ecology. Given the rapid progress today in technology and its application in the plant sciences, the goal of APPS is to foster communication within the plant science community to advance scientific research. APPS is a publication of the Botanical Society of America, originating in 2009 as the American Journal of Botany''s online-only section, AJB Primer Notes & Protocols in the Plant Sciences. APPS publishes the following types of articles: (1) Protocol Notes describe new methods and technological advancements; (2) Genomic Resources Articles characterize the development and demonstrate the usefulness of newly developed genomic resources, including transcriptomes; (3) Software Notes detail new software applications; (4) Application Articles illustrate the application of a new protocol, method, or software application within the context of a larger study; (5) Review Articles evaluate available techniques, methods, or protocols; (6) Primer Notes report novel genetic markers with evidence of wide applicability.
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