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Strain-Induced Interfacial Bond Evolution and Facet-Dependent Strain Response of Electronic Properties in Oxidized Silicon Nanowires 氧化硅纳米线中应变诱导的界面键演化及其电子性能的应变响应
IF 4.126 3区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2026-10-20 DOI: 10.1021/acs.jpcc.6c01336
Yasir Mahmood,Daniel Wines,Viviana Dovale-Farelo,Kamal Choudhary,Lucas M. Hale
Silicon nanowires (Si NWs) have emerged as promising candidates for next-generation nanoelectronic devices due to their tunable electronic properties, and compatibility with aggressive scaling requirements. The integration of strain further enhances their performance by modulating carrier mobility, band structure, and transport behavior without altering material chemistry. Within the NW, the silicon–silicon dioxide (Si–SiO2) interface serves as a critical region where strain redistribution and suboxide bonding collectively influence the mechanical and electronic response. Here, we combine reactive force field molecular dynamics and first-principles calculations to investigate how oxidation-induced interfacial structure and crystallographic facet orientation govern strain-dependent bond evolution and facet-dependent strain response of electronic properties in oxidized Si NWs. Simulated dry thermal oxidation generates chemically realistic Si–SiO2 interfaces, enabling direct characterization of bond order redistribution and stress gradient development across the interface under tensile strain. Interfacial Si–Si bonds exhibit elongation and reduced bond order associated with partial oxidation states, leading to localized stress concentration and preferential bond rupture. Complementary density functional theory calculations on facet-specific models reveal that orientation-dependent interfacial bonding modulates facet-dependent strain response of electronic properties. Together, these results establish a direct coupling between interfacial suboxide chemistry, mechanical deformation, and electronic structure, providing atomistic insight into strain-modulated behavior at oxidized silicon interfaces in faceted NWs.
硅纳米线(Si NWs)由于其可调谐的电子特性和与严格的缩放要求的兼容性,已成为下一代纳米电子器件的有希望的候选者。应变的集成通过在不改变材料化学的情况下调节载流子迁移率、能带结构和输运行为进一步提高了它们的性能。在西北方向,硅-二氧化硅(Si-SiO2)界面是应变再分布和亚氧化物键合共同影响机械和电子响应的关键区域。在这里,我们结合反应力场分子动力学和第一性原理计算来研究氧化诱导的界面结构和晶体面取向如何控制氧化Si NWs中应变依赖的键演化和面依赖的电子性能应变响应。模拟干热氧化生成化学上真实的Si-SiO2界面,可以直接表征拉伸应变下界面上的键序重新分布和应力梯度发展。界面Si-Si键表现出与部分氧化态相关的延伸和键序降低,导致局部应力集中和优先键断裂。基于面相关模型的互补密度泛函理论计算表明,取向相关的界面键合调节了面相关的电子特性应变响应。总之,这些结果建立了界面亚氧化物化学,机械变形和电子结构之间的直接耦合,为在多面NWs中氧化硅界面的应变调制行为提供了原子性的见解。
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引用次数: 0
Ortho N–H-Directed Divergent Post-Ugi Cascade Cyclization: Additive-Controlled Selective Access to Fused Indazoles and 2,5-Dihydrofurans 邻氮氢定向分散后ugi级联环化:添加剂控制的选择性获得融合茚唑和2,5-二氢呋喃
IF 4.354 2区 化学 Q1 CHEMISTRY, ORGANIC Pub Date : 2026-10-20 DOI: 10.1021/acs.joc.6c01709
Nong-Qi Mao,Hai-Feng Yu,Jun-Zhi Chen,Mei-Ning Han,Yi-Fei Lin,Jun Xiong,Zhi-Gang Zeng
A facile one-pot sequential Ugi/tunable cascade cyclization of indazole-3-carboxylic acid, amines, enynals, and isocyanides has been developed for the divergent construction of two distinct pharmaceutically relevant heterocyclic frameworks: fused polycyclic indazoles and 2,5-dihydrofurans. The ortho N–H moiety of indazole serves as an indispensable neighboring group switch, regulating two independent cyclization pathways. Under metal-free DBU-mediated conditions, intramolecular Michael addition followed by 5-exo-dig cyclization occurs, leading to the formation of dual C–N bonds and the generation of fused indazole polycycles. In contrast, cooperative AgNO3/K2CO3 catalysis triggers a silver-activated alkyne cyclization/ring-opening cascade, selectively forming C–O bonds to afford 2,5-dihydrofuran derivatives. This transformation is characterized by simple additive-switchable selectivity, broad functional group compatibility, gram-scale synthetic practicability, and the simultaneous access to two classes of pharmaceutically relevant heterocycles from identical four-component starting materials.
一种简单的一锅顺序Ugi/可调级联环化的吲哚-3-羧酸,胺,炔和异氰酸酯已经开发出两个不同的药学相关的杂环框架:融合多环吲哚和2,5-二氢呋喃。吲哚唑的邻位N-H部分作为不可缺少的邻基开关,调节两个独立的环化途径。在无金属dbu介导的条件下,发生了分子内Michael加成和5-外环化,形成了双C-N键,并产生了融合的茚唑多环。相反,AgNO3/K2CO3协同催化触发银活化的炔环化/开环级联,选择性地形成C-O键,生成2,5-二氢呋喃衍生物。该转化具有简单的可加性选择性,广泛的官能团相容性,克级合成实用性,以及从相同的四组分起始材料中同时获得两类具有药学意义的杂环。
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引用次数: 0
Chemical Conditioner-Free Sludge Dewatering via CO2 Hydrate Crystallization: Coupling Organic Matter Retention, Water Extraction, and Carbon Utilization 化学调理剂-无污泥脱水通过CO2水合物结晶:耦合有机物质保留,水提取,和碳利用
IF 12.2 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL Pub Date : 2026-10-20 Epub Date: 2026-09-09 DOI: 10.1021/acs.est.6c04440
Huilian Sun, Shuai Wang, Lunxiang Zhang, Mehrdad Vasheghani Farahani, Aliakbar Hassanpouryouzband, Lei Yang, Zheng Ling, Yongchen Song

Effective sludge dewatering is essential for reducingsludge volumeand associated transportation and disposal burdens. However, conventionalapproaches often require substantial chemical addition or energy input,increasing operating costs and potential secondary environmental impacts.Here, we present a CO2 hydrate crystallization-based dewateringapproach that avoids conventional chemical sludge conditioners. Residualwater in mechanically dewatered sludge is converted into separablesolid hydrate structures, with water molecules incorporated into hydrogen-bondedhydrate cages and sludge-derived solutes and particulates excludedfrom the hydrate lattice. Low-field nuclear magnetic resonance measurementsshowed that hydrate crystallization promoted the mobilization of mechanicallybound water, whose relative signal fraction decreased from 68.2% to40.7%. With methionine as a kinetic promoter, repeated hydrate formationand separation reduced the sludge water content to 59.3%. The screening-levelprocess electricity demand was estimated at 0.247–0.298 kWh/kgof removed water, depending on the cold energy recovery scenario.The process also retained most sludge-derived volatile solids andproduced hydrate-dissociated water with reduced aqueous constituentlevels following hydrate layer separation. These results highlightCO2 hydrate crystallization as a phase-transition-drivenstrategy for deep sludge dewatering, with energy integration and solid–liquidseparation remaining key considerations for further process development.

有效的污泥脱水对于减少污泥体积和相关的运输和处置负担至关重要。然而,传统的方法往往需要大量的化学添加或能源投入,增加了操作成本和潜在的二次环境影响。在这里,我们提出了一种基于二氧化碳水合物结晶的脱水方法,避免了传统的化学污泥调节剂。机械脱水污泥中的残余水被转化为可分离的固体水合物结构,水分子被纳入氢键水合物笼,污泥衍生的溶质和颗粒被排除在水合物晶格之外。低场核磁共振测量表明,水合物结晶促进了机械结合水的动员,其相对信号率从68.2%下降到40.7%。以蛋氨酸为动力促进剂,经过多次水合物形成和分离,污泥含水率降至59.3%。根据冷能回收方案,筛选级工艺电力需求估计为0.247-0.298千瓦时/千克去除水。该工艺还保留了大部分污泥衍生的挥发性固体,并在水合物层分离后产生水合物解离水,其含水成分水平降低。这些结果突出了CO2水合物结晶作为一种相变驱动的深度污泥脱水策略,能量整合和固液分离仍然是进一步工艺开发的关键考虑因素。
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引用次数: 0
A Data-Driven Approach for the Development of a Time-Informed Adverse Outcome Pathway Network for the Cardiotoxicity of Environmental Chemicals 一种数据驱动的方法,用于开发一个时间信息的环境化学品心脏毒性不良结果通路网络
IF 12.2 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL Pub Date : 2026-10-20 Epub Date: 2026-10-02 DOI: 10.1021/acs.est.6c00396
Alexandra Schaffert, Sivakumar Murugadoss, Tom Roos, Nunzia Linzalone, Gabriele Donzelli, Ronette Gehring, Birgit Mertens, Martin Paparella

We developed a bottom-up, data-driven approach for constructinga time-informed adverse outcome pathway (AOP) network for environmentalchemical-induced cardiotoxicity. Mechanistic end points were systematicallyextracted from 339 in vitro and in vivo studies, yielding 1759 KeyEvent (KE) entries and 4938 Key Event Relationship (KER) entries,together with study metadata and essentiality evidence from interventionexperiments. After quality filtering and minimum support thresholding,62 unique KEs and 256 unique KERs were retained for network construction.Network analysis highlighted oxidative stress and mitochondrial dysfunctionas prominent, highly connected KEs linking diverse upstream perturbationsto downstream cardiomyocyte injury, inflammation, cardiac remodeling(fibrosis and hypertrophy), decreased myocardial contractility, andreduced left ventricular function. A central methodological findingwas that temporal information was more informative at the level ofKERs than at the level of KEs. The same KE could occur across multipledurations depending on the relationship in which it was embedded,whereas KER-level time-scale annotation resolved distinct acute, subacute,and chronic pathway patterns not apparent from KE timing alone. Thisframework provides an evidence-weighted synthesis of the most consistentlysupported cardiotoxicity mechanisms and introduces a temporal layerfor the mechanistic interpretation of heterogeneous evidence.

我们开发了一种自下而上的数据驱动方法,用于构建环境化学诱导的心脏毒性的时间信息不良结果通路(AOP)网络。系统地从339项体外和体内研究中提取机制终点,得到1759个关键事件(KE)条目和4938个关键事件关系(KER)条目,以及来自干预实验的研究元数据和必要性证据。经过质量滤波和最小支持度阈值后,保留62个唯一的ke和256个唯一的ker用于网络构建。网络分析强调,氧化应激和线粒体功能障碍是突出的、高度关联的KEs,将各种上游扰动与下游心肌细胞损伤、炎症、心脏重塑(纤维化和肥厚)、心肌收缩力下降和左心室功能降低联系起来。一个中心的方法学发现是,时间信息在KERs水平上比在KEs水平上更具信息性。根据其嵌入的关系,相同的KE可以在多个持续时间内发生,而ker水平的时间尺度注释可以区分急性,亚急性和慢性途径模式,而仅从KE时间上不明显。该框架提供了最一致支持的心脏毒性机制的证据加权综合,并为异质性证据的机制解释引入了时间层。
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引用次数: 0
Spatiotemporal Magnetic Decoupling Directs Spin-Dependent Cascade ROS Evolution for Electro-Fenton Water Decontamination 时空磁去耦指导自旋依赖级联ROS进化的电fenton水净化
IF 12.2 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL Pub Date : 2026-10-20 Epub Date: 2026-10-06 DOI: 10.1021/acs.est.6c08534
Tong Xu, Pan Xia, Jingwen Wang, Jiaqin Xiao, Jun Zhai, Liying Yang, Bingbing Wang, Qiang He, Fábio Gozzi, Zhihong Ye

Heterogeneous electro-Fenton (HEF) systems hold greatpotentialfor decentralized water purification, yet concurrently achieving highcatalytic activity, structural stability, and controlled reactiveoxygen species (ROS) selectivity remains challenging. Herein, we proposea spatiotemporal magnetic decoupling strategy to concurrently addressthese design objectives. The carbon shell spatially separated exteriorFe0 satellites from the FeNx core, eliminating deleterious short-range magnetic quenching andaltering the local magnetic environment to modulate the internal Fe(III)spin state. The resulting low-spin Fe(III) sites suppressed electronback-donation into the H2O2 σ∗antibonding orbital, favoring an additional 1O2 generation pathway. Spatial decoupling also enabled a gradient cascadeactivation of H2O2 across the Fe0 and FeNx domains, synergistically boostingthe evolution of both •OH and 1O2, with steady-state concentrations reaching 18.25 and 5.27μM, respectively. Consequently, the FeNx@C–Fe0-based HEF achieved complete naproxendegradation within 60 min with significantly suppressed Fe leaching(0.85 mg L–1), outperforming all comparative systems.Comprehensive characterizations and density functional theory (DFT)calculations established a definitive relationship between topologicalengineering and spin-state dynamics. Furthermore, the system demonstratedproof-of-concept applicability in real hospital wastewater, highlightingthe potential of spatiotemporal spin-state engineering for regulatingROS evolution in HEF systems.

非均相电fenton (HEF)系统在分散式水净化方面具有巨大潜力,但同时实现高催化活性、结构稳定性和可控活性氧(ROS)选择性仍然具有挑战性。在此,我们提出了一种时空磁解耦策略来同时解决这些设计目标。碳壳在空间上将外部Fe0卫星与FeNx核心分离,消除了有害的短程磁猝灭,并改变了局部磁环境来调节内部Fe(III)的自旋态。由此产生的低自旋Fe(III)位点抑制了电子回给到H2O2 σ *反键轨道,有利于额外的1O2生成途径。空间解耦还使H2O2在Fe0和FeNx结构域上发生梯度级联活化,协同促进•OH和1O2的演化,其稳态浓度分别达到18.25 μM和5.27 μM。因此,FeNx@C - fe0基HEF在60分钟内实现了萘普生的完全降解,显著抑制了铁浸出(0.85 mg L-1),优于所有比较系统。综合表征和密度泛函理论(DFT)计算建立了拓扑工程和自旋态动力学之间的明确关系。此外,该系统在实际医院废水中证明了概念验证的适用性,突出了时空自旋态工程在HEF系统中调节ROS进化的潜力。
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引用次数: 0
Aging of Urban Traffic Fine Particles Modulates Toxicity Mechanisms and Oxidative Stress Responses 城市交通细颗粒物老化调节毒性机制和氧化应激反应
IF 12.2 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL Pub Date : 2026-10-20 Epub Date: 2026-10-08 DOI: 10.1021/acs.est.6c06323
Michal Pardo, Noga Kozer, Carolina Molina, Yanfang Chen, Haim Barr, Galit Cohen, Damianos Pavlidis, Christos Kaltsonoudis, Katerina Seitanidi, Georgia A. Argyropoulou, Christina N. Vasilakopoulou, Christina Christopoulou, Angeliki Matrali, Mingchen Wei, Andre S. H. Prevot, David M. Bell, Spyros N. Pandis, Athanasios Nenes, Yinon Rudich

Vehicular emissions are an important source of urbanair pollutionthat can age through atmospheric processes, but how their health effectschange during atmospheric aging remains poorly understood. To simulaterealistic urban emissions, we sampled air in a parking garage wherecold-start and urban emissions coexist. Following aging in an oxidationflow reactor (OFR), we studied the cellular and acellular effectsof the fresh and aged aerosols. Photochemical aging in the OFR increasedsecondary organic aerosol (SOA) mass by up to 6.9-fold, the oxygen-to-carbon(O:C) ratio from 0.26 to 0.79, and both the intrinsic oxidative potential(OPm) and the volume-normalized oxidative potential (OPv). In contrast,the peroxide-sensitive DCF activity decreased following aging. Cellularexposure to aged aerosol extracts increased cellular reactive oxygenspecies (ROS) formation in lung (A549) and liver (HepG2) cells, whereasfresh extracts strongly reduced cellular respiration, particularlyin HepG2 cells. Cell painting analysis showed distinct morphologicalprofiles. Exposure to aged extracts showed greater oxidative stressand DNA damage responses than those of exposure to fresh extracts.These findings suggest that atmospheric aging shifts the toxicityof fresh emissions from suppression of mitochondrial respiration towardoxygenated organics that can drive intracellular oxidative stressand DNA damage phenotypes. In conclusion, atmospheric aging of cold-startand urban vehicular emissions contributes to enhanced SOA formationand leads to distinct biological outcomes that depend on the degreeof oxidative aging.

汽车尾气排放是城市空气污染的重要来源,可通过大气过程老化,但其对健康的影响如何在大气老化过程中发生变化仍知之甚少。为了模拟真实的城市排放,我们对冷启动和城市排放并存的停车场的空气进行了采样。在氧化流反应器(OFR)中老化后,我们研究了新鲜和老化的气溶胶对细胞和非细胞的影响。OFR中的光化学老化使二次有机气溶胶(SOA)质量增加了6.9倍,氧碳比(O:C)从0.26增加到0.79,固有氧化电位(OPm)和体积归一化氧化电位(OPv)都增加了。相反,随着年龄的增长,过氧化物敏感DCF活性下降。细胞暴露于老化的气溶胶提取物增加了肺(A549)和肝(HepG2)细胞的活性氧(ROS)形成,而新鲜提取物强烈地减少了细胞呼吸,特别是在HepG2细胞中。细胞彩绘分析显示出明显的形态特征。暴露于陈年提取物比暴露于新鲜提取物表现出更大的氧化应激和DNA损伤反应。这些发现表明,大气老化将新鲜排放物的毒性从抑制线粒体呼吸转移到氧化有机物,从而驱动细胞内氧化应激和DNA损伤表型。综上所述,冷启动和城市车辆排放的大气老化有助于增强SOA的形成,并导致不同的生物学结果,这些结果取决于氧化老化的程度。
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引用次数: 0
Expansion of Freshwater Harmful Cyanobacteria in Brackish Waters: Salt Stress Responses, Toxigenic Dynamics, and Ecological Risks along the Freshwater-to-Marine Continuum 淡水有害蓝藻在咸淡水中的扩张:盐胁迫反应、产毒动力学和淡水-海洋连续体的生态风险
IF 12.2 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL Pub Date : 2026-10-20 Epub Date: 2026-10-07 DOI: 10.1021/acs.est.6c06461
Yingying Huang, Haipeng Wu, Xiaoyang Zhang, Panyi Chen, Xinlu Li, Yixuan Zeng, Zhansen Sha, Xiaodong Jiang, Yiping Li, Hans W. Paerl, Xuechu Chen

In recent years, freshwater harmful cyanobacterial blooms(CyanoHABs)and their associated cyanotoxins have been increasingly detected inestuaries and coastal lagoons, indicating that some freshwater taxacan survive in low-to-moderate salinity and may maintain their toxigenicpotential in brackish environments. These observations highlight theneed to understand the distribution, persistence, and ecological risksof freshwater harmful cyanobacteria across connected aquatic systems.This review synthesizes global field and mechanistic evidence on theexpansion of freshwater harmful cyanobacteria along the freshwater–to–marinecontinuum. Hydrodynamic processes facilitate downstream transport,while salinity gradients regulate cyanobacterial survival and physiologicalresponses. Salt stress induces cellular damage but also triggers adaptivephysiological responses supporting survival. The persistence of freshwaterharmful cyanobacteria in these systems is shaped by both species-and strain-level differences in salt tolerance, as well as physiologicalconditioning and environmental conditions experienced during transport.In addition, salinity influences cyanotoxin production, release, partitioningbetween particulate and dissolved fractions, and environmental persistence,thereby influencing ecological risks in brackish waters. Overall,this review synthesizes cyanobacterial adaptation and cyanotoxin dynamicsalong the freshwater–to–marine continuum and emphasizesintegrated monitoring and modeling to support risk assessment andmanagement of CyanoHABs.

近年来,淡水有害蓝藻华(CyanoHABs)及其相关的蓝藻毒素在河口和沿海泻湖中被越来越多地检测到,这表明一些淡水类群可以在低至中等盐度环境中生存,并可能在微咸环境中保持其产毒能力。这些观察结果强调需要了解分布,持久性和生态风险的淡水有害蓝藻跨连接的水生系统。本文综述了淡水有害蓝藻沿淡水-海洋连续体扩展的全球现场和机理证据。水动力过程促进下游运输,而盐度梯度调节蓝藻的生存和生理反应。盐胁迫会引起细胞损伤,但也会引发支持生存的适应性生理反应。淡水有害蓝藻在这些系统中的持续存在是由物种和菌株在耐盐性方面的差异以及在运输过程中经历的生理条件和环境条件所决定的。此外,盐度影响蓝藻毒素的产生、释放、颗粒和溶解部分之间的分配以及环境持久性,从而影响微咸水域的生态风险。总体而言,本文综合了淡水-海洋连续体中蓝藻的适应和蓝藻毒素的动态,并强调了综合监测和建模,以支持蓝藻有害藻华的风险评估和管理。
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引用次数: 0
Natural Hazard Risks in LCA for the Built Environment: Managing Stochastic Inputs in Stochastic Process-Based LCA 建筑环境LCA中的自然灾害风险:基于随机过程的LCA中的随机输入管理
IF 12.2 1区 环境科学与生态学 Q1 ENGINEERING, ENVIRONMENTAL Pub Date : 2026-10-20 Epub Date: 2026-10-07 DOI: 10.1021/acs.est.6c07128
Xavier Tanguay, Ben Amor

Natural hazards affect the environmental sustainabilityof thebuilt environment because of the environmental losses caused, suchas the environmental impacts of the repairs and the indirect effectsof downtime. Asset performance assessment workflows allow for probabilisticallyconnecting frequent and infrequent hazards with building response,damages, and environmental losses. Environmental life cycle assessmentis emerging as the preferred methodology to derive environmental losses,but current tools struggle with interoperability issues, promptingsimplifications in converting the material damages to environmentallosses and limiting environmental uncertainty propagation. This studyproposes a novel coupling framework that leverages a dual presamplingstrategy paired with a preaggregation step on background environmentaldatasets, expediting in minutes the computation of thousands of stochasticenvironmental life cycle assessment results. The coupling frameworkis demonstrated with two scales of asset performance assessment workflows:one for individual buildings and one for portfolios of buildings,both exposed to a hurricane hazard. The case studies underline keyloss drivers originating from different steps in the workflow, includingthe conversion from damages to environmental losses. The couplingframework provides groundwork for identifying natural hazard effectson the sustainability of the built environment, a key step in formulatingsustainable adaptation strategies to a changing climate.

摘要自然灾害影响建筑环境的环境可持续性,主要是由于修复过程中造成的环境损失,以及停工造成的间接影响。资产绩效评估工作流程允许概率地将频繁和不频繁的危险与建筑响应、损害和环境损失联系起来。环境生命周期评估正在成为计算环境损失的首选方法,但目前的工具存在互操作性问题,促使将物质损害转换为环境损失的简化,并限制了环境不确定性的传播。本研究提出了一种新的耦合框架,该框架利用双重预采样策略与背景环境数据集的预聚合步骤相结合,在几分钟内加快了数千个随机环境生命周期评估结果的计算。耦合框架用资产绩效评估工作流的两个尺度来演示:一个用于单个建筑物,一个用于建筑物组合,两者都暴露在飓风危险中。案例研究强调了来自工作流程中不同步骤的主要损失驱动因素,包括从损害到环境损失的转换。耦合框架为确定自然灾害对建筑环境可持续性的影响提供了基础,这是制定可持续适应气候变化战略的关键步骤。
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引用次数: 0
In Pursuit of Enduring Inactivation: A Perspective on the Development and Study of Irreversible-Covalent Inhibitors 追求持久失活:不可逆共价抑制剂的发展与研究展望
IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-10-20 Epub Date: 2026-10-05 DOI: 10.1021/acs.biochem.6c00624
Matthias Gehringer, David E. Heppner

Molecules that formirreversible covalent bonds with their targetsare a mainstay of drug discovery and chemical biology research. Theirability to permanently inactivate an enzyme target provides a mechanismwith significant potential to modulate disease phenotypes. This perspectivediscusses the trajectory of the field of irreversible enzyme inhibitorswith an outlook on emerging methods, warhead structures, and sentimentspresently directing practices in the discovery and design of the nextwave of covalent agents.

与靶标形成不可逆共价键的分子是药物发现和化学生物学研究的支柱。它们永久灭活酶靶点的能力为调节疾病表型提供了一种具有重要潜力的机制。这一观点讨论了不可逆酶抑制剂领域的发展轨迹,并展望了新出现的方法、弹头结构和目前指导下一波共价剂的发现和设计实践的观点。
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引用次数: 0
Modulating Radical Propagation in Proteins by Proton-Coupled Electron Transfer and Hydrogen Bonding 质子耦合电子转移和氢键调节自由基在蛋白质中的传播
IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-10-20 Epub Date: 2026-09-28 DOI: 10.1021/acs.biochem.6c00525
Rebecca K. Zawistowski, Timothée Chauviré, Sutanuka Manna, Nandini Ananth, Brian R. Crane

Long-range proteinelectron transfer (ET) often depends on tryptophanand tyrosine residues acting as radical relay sites. For example,cytochrome c peroxidase (CcP) generates a W191•+ radical to increase ET from cytochrome c (Cc) tothe active center. W191 substitution to Tyr reduces ET rates, butintroduction of an adjacent general base (as Glu or His) at position232 (Y191:E/H232 CcP) recovers activity. E232 fluorination lowersthe pKa of the conjugate base and confirmsthat a hydrogen bond is critical to elevate the Y191• formal potential for effective ET. Photoinitiated ET between Zn-porphyrin(ZnP) CcP (ZnCcP) and Cc also depends on activatingY191 with a basic residue but through a different mechanism than forthe peroxide-driven system. In ZnCcP, pH dependencies and solventisotope effects indicate that proton-coupled electron transfer tothe basic residue and ZnP•+, respectively, facilitatesY191• formation. Replacing Cc withthe irreversible oxidant [Co(NH3)5Cl]2+ isolatesdistinct protein radicals for characterization by electron paramagneticresonance (EPR) spectroscopy. Radical distributions and computationindicate that W191•+ lies close in potential toZnP•+ and that the two radicals exchange on a slowtime scale despite their close separation. Remarkably, Y191:E/H232ZnCcP variants propagate radicals differently to peripheral sitesdepending on the nature of the 232 residue. QM/MM calculations supportradical exchange between ZnP•+/Trp•+ and the importance of a hydrogen bond to Y191• for maintaining a high potential to oxidize peripheral donors. Theseresolved reactivity patterns of CcP/ZnCcP have general relevance forengineering proton management to separate and migrate charge in proteinsand potentially other molecular systems.

远距离蛋白质电子转移(ET)往往依赖于色氨酸和酪氨酸残基作为自由基传递位点。例如,细胞色素c过氧化物酶(CcP)产生W191•+自由基,增加细胞色素c (Cc)到活性中心的ET。W191取代Tyr降低了ET速率,但在位置232 (Y191:E/H232 CcP)引入相邻的通用碱(如Glu或His)可恢复活性。E232氟化降低了共轭碱的pKa,并证实了氢键对于提高Y191•有效ET的形式电位至关重要。锌卟啉(ZnP) CcP (ZnCcP)和Cc之间的光引发ET也依赖于碱性残基活化Y191,但通过与过氧化物驱动系统不同的机制。在ZnCcP中,pH依赖性和溶剂位效应表明质子耦合电子向碱性残基和ZnP•+的转移分别促进了y191•的形成。用不可逆氧化剂[Co(NH3)5Cl]2+代替Cc可分离出不同的蛋白质自由基,并用电子顺磁共振(EPR)光谱进行表征。自由基分布和计算表明,W191•+与znp•+的电位接近,两个自由基虽然相距很近,但交换速度较慢。值得注意的是,Y191:E/H232ZnCcP变体根据232残基的性质将自由基传播到不同的外周位点。QM/MM计算了ZnP•+/Trp•+之间的支持交换以及Y191•的氢键对维持高氧化外围供体电位的重要性。这些解出的CcP/ZnCcP的反应模式与工程质子管理在蛋白质和潜在的其他分子系统中分离和迁移电荷具有普遍的相关性。
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引用次数: 0
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