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Withaferin A-Loaded CS/β-GP Thermosensitive Hydrogel Attenuates Diabetes-Associated Renal Injury in a Diabetic Rat Model. 载CS/β-GP热敏水凝胶减轻糖尿病大鼠模型糖尿病相关肾损伤
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-09-14 DOI: 10.1007/s12010-026-05930-4
Cuicui Cheng, Jiao Cai, Xiuwei Li, Peng Sun

Diabetic nephropathy (DN) is a major complication of diabetes characterized by progressive renal dysfunction driven by oxidative stress and chronic inflammation. Although Withaferin A (WA) possesses antioxidant and anti-inflammatory properties, its clinical application is limited by poor aqueous solubility and rapid systemic clearance. This study developed a thermosensitive chitosan/β-glycerophosphate (CS/β-GP) hydrogel as a sustained-release platform for WA delivery and evaluated its renoprotective potential using high glucose-treated renal cells. An early streptozotocin-induced diabetes-associated renal injury animal model following 4 days of treatment and a 28-day observation period. The CS/β-GP-WA hydrogel demonstrated favorable physicochemical properties, including efficient drug encapsulation, thermoresponsive gelation, injectability, sustained drug release, and good batch-to-batch reproducibility. Under high-glucose conditions, the hydrogel improved cell viability, reduced intracellular reactive oxygen species generation, preserved mitochondrial membrane potential, restored antioxidant enzyme activity, and decreased pro-inflammatory cytokine production. In diabetic rats, CS/β-GP-WA treatment was associated with improved glycemic control and renal function, reflected by reduced serum creatinine, blood urea nitrogen, urinary protein, and oxidative stress markers. Histological analyses further showed preservation of renal structure and reduced tissue injury. These improvements were accompanied by increased Nrf2, HO-1, and NQO1 mRNA expression and reduced Keap1 expression, suggesting an association with enhanced antioxidant responses. Overall, sustained delivery of WA using the CS/β-GP hydrogel was associated with attenuation of diabetes-associated renal injury and improved renal functional and histological outcomes in this early experimental model. However, the absence of protein-level mechanistic validation and comprehensive pharmacokinetic and tissue-distribution analyses limits definitive conclusions regarding pathway activation and renal targeting. Further studies are warranted to confirm the underlying mechanisms and evaluate long-term therapeutic potential.

糖尿病肾病(DN)是糖尿病的主要并发症,以氧化应激和慢性炎症驱动的进行性肾功能障碍为特征。虽然Withaferin A (WA)具有抗氧化和抗炎的特性,但其水溶性差和快速全身清除限制了其临床应用。本研究开发了一种热敏壳聚糖/β-甘油磷酸酯(CS/β-GP)水凝胶作为WA递送的缓释平台,并在高糖处理的肾细胞中评估了其保护肾的潜力。给药4 d,观察28 d,建立早期链脲佐菌素致糖尿病相关性肾损伤动物模型。CS/β-GP-WA水凝胶具有良好的物理化学性质,包括高效的药物包封、热反应凝胶化、可注射性、药物缓释和良好的批间重复性。在高糖条件下,水凝胶提高了细胞活力,减少了细胞内活性氧的产生,保存了线粒体膜电位,恢复了抗氧化酶活性,减少了促炎细胞因子的产生。在糖尿病大鼠中,CS/β-GP-WA治疗与血糖控制和肾功能改善有关,这可以通过降低血清肌酐、血尿素氮、尿蛋白和氧化应激标志物来反映。组织学分析进一步显示肾脏结构的保存和组织损伤的减少。这些改善伴随着Nrf2、HO-1和NQO1 mRNA表达的增加和Keap1表达的减少,表明与增强的抗氧化反应有关。总体而言,在这个早期实验模型中,使用CS/β-GP水凝胶持续递送WA与糖尿病相关肾损伤的衰减以及肾功能和组织学结果的改善有关。然而,缺乏蛋白水平的机制验证和全面的药代动力学和组织分布分析限制了关于途径激活和肾脏靶向的明确结论。需要进一步的研究来确认潜在的机制和评估长期的治疗潜力。
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引用次数: 0
Synthesis and Characterization of Triphala-functionalized Gold Nanocomposite and its Anti-proliferative Implications against Liver Cancer. 三元功能化金纳米复合材料的合成、表征及其抗肝癌增殖作用。
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-07-14 DOI: 10.1007/s12010-026-05829-0
Jyotishman Tamuli, Khemnath Patir, Sarbani Giri

Liver cancer is a leading cause of cancer-related mortality worldwide due to its abrupt proliferation and inadequate treatment. Developing novel and effective therapeutics against liver cancer has become a formidable challenge in the arsenal of biomedical research due to the limitations of conventional treatment strategies. Recently, natural product-based metal nanocomposites have emerged as promising candidates for targeted and biocompatible drug delivery. Herein, a Triphala-functionalized gold nanocomposite (t-AuNC) was synthesized employing Triphala extract and gold nanoparticles (AuNPs) as the precursors to enhance targeted delivery against liver cancer. Different analytical techniques, including TEM, DLS, UV-visible spectroscopy, XRD, zeta potential, FT-IR, and EDX analysis, were used to evaluate the synthesized nanocomposite, confirming its successful formation and stability. The MTT and SRB assays demonstrated the anti-proliferative implications of t-AuNC against the HepG2 cell line. Flow cytometry analysis confirms the induction of apoptosis in the HepG2 cell line by the t-AuNC. Antioxidant analysis using DPPH and ABTS assays showed significant radical scavenging activity of the t-AuNC. Furthermore, the t-AuNC also demonstrated notable anti-inflammatory properties validated by its protein denaturation inhibition. Collectively, these findings highlight that t-AuNC could be a contemporary and efficient medication for liver cancer therapy with minimized side effects.

肝癌是世界范围内癌症相关死亡的主要原因,因为它的突然增殖和治疗不足。由于传统治疗策略的局限性,开发新的有效的肝癌治疗方法已经成为生物医学研究的一个巨大挑战。近年来,天然产物基金属纳米复合材料已成为靶向和生物相容性药物递送的有希望的候选材料。本文以Triphala提取物和金纳米颗粒(AuNPs)为前体,合成了一种Triphala功能化金纳米复合材料(t-AuNC),以增强肝癌靶向递送。利用TEM、DLS、uv -可见光谱、XRD、zeta电位、FT-IR和EDX等分析技术对合成的纳米复合材料进行了表征,证实了其成功形成和稳定性。MTT和SRB实验显示t-AuNC对HepG2细胞系具有抗增殖作用。流式细胞术分析证实t-AuNC可诱导HepG2细胞株凋亡。DPPH和ABTS抗氧化分析显示t-AuNC具有明显的自由基清除活性。此外,t-AuNC还表现出显著的抗炎特性,证实了其蛋白质变性抑制作用。总的来说,这些发现强调了t-AuNC可能是一种副作用最小的当代有效的肝癌治疗药物。
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引用次数: 0
Model-Guided Optimization of a Low-Serum Medium for Madin-Darby Canine Kidney Cells Using a Kolmogorov-Arnold Network and Bayesian Optimization. 基于Kolmogorov-Arnold网络和贝叶斯优化的Madin-Darby犬肾细胞低血清培养基模型优化
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-07-23 DOI: 10.1007/s12010-026-05846-z
Mengting Zhang, Juntao Wang, Lei Zhou, Jianmin Chen, Qilei Liu, Qingwei Meng

Madin-Darby canine kidney (MDCK) cells are important hosts for cell culture-based viral vaccine production, but fetal bovine serum (FBS) supplementation increases cost, batch variability, adventitious-agent risk, and regulatory burden. This study developed a 2% FBS low-serum medium optimization workflow for MDCK cells by integrating design of experiments (DoE) with interpretable machine learning. A Plackett-Burman (PB) design screened 27 nutritional components and identified seven factors that significantly affected proliferation. L-glutamine, L-asparagine, and L-tyrosine showed positive effects and were further optimized using a three-factor Box-Behnken design (BBD). A Kolmogorov-Arnold network (KAN) modeled the nonlinear proliferation response, and its response function served as the objective function for Bayesian optimization (BO). After two KAN-BO validation cycles, the optimized formulation contained 292.30 mg/L L-glutamine, 54.36 mg/L L-tyrosine, and 11.34 mg/L L-asparagine. The predicted relative proliferation rate was 159.38%, in close agreement with the experimental value of 158.63 ± 1.70%. Compared with Baseline medium, Optimized medium enhanced MDCK cell proliferation while maintaining typical adherent epithelial-like morphology and high viability. In H1N1 BVR-26 production assays, Optimized medium achieved a peak titer of 3.50 ± 0.05 log10 50% tissue culture infectious dose (TCID50)/mL at 48 h post-infection, outperforming both Baseline medium and Commercial medium. Metabolic analysis showed higher apparent glucose consumption and lower lactate yield, indicating improved glucose utilization and reduced metabolic burden. These results demonstrate that the PB-BBD-KAN-BO workflow is an efficient, interpretable, and experiment-saving strategy for low-serum medium development.

Madin-Darby犬肾(MDCK)细胞是细胞培养病毒疫苗生产的重要宿主,但添加胎牛血清(FBS)会增加成本、批次差异、不定因子风险和监管负担。本研究通过将实验设计(DoE)与可解释机器学习相结合,开发了MDCK细胞2% FBS低血清培养基优化工作流程。Plackett-Burman (PB)设计筛选了27种营养成分,确定了7种显著影响增殖的因素。l -谷氨酰胺、l -天冬酰胺和l -酪氨酸表现出积极作用,并采用三因素Box-Behnken设计(BBD)进一步优化。用Kolmogorov-Arnold网络(KAN)建模非线性扩散响应,其响应函数作为贝叶斯优化(BO)的目标函数。经2个KAN-BO循环验证,优化后的配方中L-谷氨酰胺含量为292.30 mg/L, L-酪氨酸含量为54.36 mg/L, L-天冬酰胺含量为11.34 mg/L。预测的相对增殖率为159.38%,与实验值158.63±1.70%基本一致。与基线培养基相比,优化后的培养基增强了MDCK细胞的增殖,同时保持了典型的贴壁上皮样形态和高活力。在H1N1 BVR-26生产试验中,优化培养基在感染后48 h的峰值滴度为3.50±0.05 log10 50%的组织培养感染剂量(TCID50)/mL,优于基线培养基和商用培养基。代谢分析表明,表观葡萄糖消耗量增加,乳酸产量降低,表明葡萄糖利用率提高,代谢负担减轻。这些结果表明,PB-BBD-KAN-BO工作流程是一种高效、可解释且节省实验的低血清培养基开发策略。
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引用次数: 0
Optimization of Enzymatic Hydrolysis Process for Tobacco stem via Response Surface Methodology and its Application in Reconstituted Tobacco leaf. 响应面法优化烟茎酶解工艺及其在再造烟叶中的应用。
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-07-30 DOI: 10.1007/s12010-026-05855-y
Lichun Han, Shanshan Li, Anlai Luo, Yuqing Xie, Reheela Adeeb, Xiaoyan Liu, Ran Yang, Dafeng Yin, Guangsen Fan

To enhance lignocellulose degradation in tobacco stem fibers and improve the quality of reconstituted tobacco, this study optimized xylanase-mediated hydrolysis. Xylanase OKBK was identified as the most effective enzyme, producing a reducing sugar yield of 2.29%, significantly higher than those obtained with other tested enzymes (p< 0.05). Single-factor experiments were performed to evaluate the effects of six key parameters, including enzyme concentration, hydrolysis time, pH, solid-to-liquid ratio, temperature, and shaking speed. Plackett-Burman design identified five significant factors (p< 0.05), and the steepest ascent method was subsequently used to determine the optimal region for response surface optimization. A Box-Behnken design was then applied to develop a quadratic regression model involving temperature, hydrolysis time, and enzyme concentration, which exhibited high predictive accuracy (R²= 0.9950). The optimized conditions predicted by the model were 50 ℃, 4.5 h, and 400 U/mL, resulting in a reducing sugar yield of 21.1%, closely matching the predicted value of 21.5%. Component analysis, FTIR, and SEM characterization demonstrated that xylanase effectively disrupted the lignocellulosic structure and facilitated component degradation. Furthermore, sensory evaluation of reconstituted tobacco sheets prepared from enzymatically treated stems showed improved sensory properties, particularly reduced woody odor and smoke harshness. Overall, the optimized xylanase hydrolysis process enhanced lignocellulose degradation and sensory quality, providing a promising strategy for the high-value utilization of tobacco stem waste.

为了提高烟草茎纤维中木质纤维素的降解能力,提高再造烟草的质量,本研究优化了木聚糖酶介导的水解工艺。木聚糖酶OKBK被确定为最有效的酶,产生2.29%的还原糖收率,显著高于其他酶(p
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引用次数: 0
Integrated Multi-Omics Analysis of Gut Microbiota-Associated Metabolites and Related Host Molecular Signatures in Cervical Squamous Cell Carcinoma. 宫颈鳞状细胞癌中肠道微生物相关代谢物和相关宿主分子特征的综合多组学分析
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-08-25 DOI: 10.1007/s12010-026-05891-8
Bin Chen, Changchang Xu

Cervical squamous cell carcinoma and endocervical adenocarcinoma (CESC) is a common female malignancy. Gut microbiota and metabolites are critical regulators of tumor immunity and therapy, but their roles in CESC remain unclear. This study integrated TCGA and GEO datasets with gut microbiota information to construct a protein-protein interaction network. These targets were prioritized using machine learning, SHAP interpretation, and Mendelian randomization analysis. Immune-related pathways were explored using single-cell and spatial transcriptomic analyses. Molecular docking and molecular dynamics simulations were performed to evaluate potential interactions between key metabolites and their targets. A total of 136 gut microbiota-related DEGs were identified, which may be associated with intercellular immune interactions. KDR was selected as a core target and may exert protective effects. Single-cell and spatial transcriptomic analyses suggested that specific metabolites may be associated with changes in the tumor microenvironment potentially involving the MIF signaling pathway. Network analysis of microbes, metabolites, and targets suggested that metabolites such as 5-(3,4-dihydroxyphenyl) pentanoic acid may serve as key mediators linking gut microbiota and KDR signaling. Additionally, eight non-toxic metabolites with favorable drug-likeness were identified, molecular docking and molecular dynamics simulation demonstrated stable binding to KDR with potential bioactivity, providing a theoretical basis for developing microbiota-related therapeutic strategies. The gut microbiota and its metabolites may be associated with the immune microenvironment and tumor progression in CESC, potentially involving the MIF signaling axis. This study provides a computational framework and preliminary evidence supporting microbiota-related hypotheses, and may inform future experimental investigations and therapeutic strategy development.

宫颈鳞状细胞癌和宫颈内膜腺癌是一种常见的女性恶性肿瘤。肠道微生物群和代谢物是肿瘤免疫和治疗的关键调节因子,但它们在CESC中的作用尚不清楚。本研究将TCGA和GEO数据集与肠道微生物群信息相结合,构建蛋白质-蛋白质相互作用网络。使用机器学习、SHAP解释和孟德尔随机化分析对这些目标进行优先排序。利用单细胞和空间转录组分析探索免疫相关途径。通过分子对接和分子动力学模拟来评估关键代谢物与其靶标之间的潜在相互作用。共鉴定出136个与肠道微生物群相关的deg,它们可能与细胞间免疫相互作用有关。选择KDR作为核心靶点,可能发挥保护作用。单细胞和空间转录组学分析表明,特定代谢物可能与肿瘤微环境的变化有关,可能涉及MIF信号通路。微生物、代谢物和靶点的网络分析表明,代谢物如5-(3,4-二羟基苯基)戊酸可能是连接肠道微生物群和KDR信号传导的关键介质。此外,鉴定出8种具有良好药物相似性的无毒代谢物,分子对接和分子动力学模拟显示与KDR结合稳定,具有潜在的生物活性,为制定微生物相关治疗策略提供理论依据。肠道微生物群及其代谢物可能与CESC的免疫微环境和肿瘤进展有关,可能涉及MIF信号轴。该研究提供了一个计算框架和初步证据,支持微生物群相关假设,并可能为未来的实验研究和治疗策略开发提供信息。
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引用次数: 0
Design and Evaluation of Pyrazole Herbicides: QSAR-Driven Synthesis for Effective Weed Control and Crop Safety in Rice. 吡唑类除草剂的设计与评价:qsar驱动合成对水稻有效除草和作物安全的影响。
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-08-22 DOI: 10.1007/s12010-026-05877-6
Kailashpati Tripathi, Rakesh Kumar, Parshant Kaushik, Virendra Singh Rana, Rajesh Kumar, T K Das, Najam Akhtar Shakil

A total of twenty pyrazole derivatives were synthesized using alkoxy or halo acetophenones in reaction with N, N-dimethylformamide dimethylacetal (DMF-DMA). These compounds were characterized through 1H NMR, 13C NMR, and LC-HRMS techniques. Their herbicidal efficacy against barnyard grass (Echinochloa crus-galli) was evaluated via in vitro bioassays. Notably, compound 6a (5-Methoxy-2-(1H-pyrazol-3-yl) phenol) and compound 6s (3-(4-Fluoro-2-hydroxyphenyl) pyrazole) demonstrated inhibition rates of 30.6% to 54.1% and 26.9% to 50.6%, respectively, across concentrations ranging from 62.5 to 1000 µg mL- 1. In in vivo assessments, compound 6a yielded the highest weed control index (WCI) of 51.32%, followed by compound 6s with a WCI of 50.24%. These findings indicate that compound 6a represents a promising herbicidal agent, effectively managing barnyard grass while exhibiting tolerance toward rice seedlings following both post-emergence and soil application. Toxicity predictions for the synthesized compounds were evaluated for fish (LC50: 0.0001 to 38.1 mg/L), daphnids (LC50: 0.0001 to 27.7 mg/L), and green algae (EC50: 0.0001 to 1.70 mg/L), including chronic toxicity (ChV). Using the ECOSAR model, the assessment found that shorter chain compounds are within acceptable limits. The binding free energy of compound 6a with HPPD was relatively low (-8.3), which was consistent with the findings of bioassay activity studies. As a result, compound 6a could serve as the starting point for the development of novel HPPD inhibitors.

以烷氧基或环苯乙酮为原料,与N, N-二甲基甲酰胺二甲基缩醛(DMF-DMA)反应,合成了20个吡唑衍生物。这些化合物通过1H NMR, 13C NMR和LC-HRMS技术进行了表征。采用体外生物测定法评价其对禾草的除草效果。值得注意的是,化合物6a(5-甲氧基-2-(1h -吡唑-3-基)苯酚)和化合物6s(3-(4-氟-2-羟基苯基)吡唑)在62.5至1000µg mL- 1浓度范围内的抑制率分别为30.6%至54.1%和26.9%至50.6%。体内杂草防治指数(WCI)最高的是化合物6a,为51.32%;其次是化合物6s, WCI为50.24%。这些研究结果表明,化合物6a是一种很有前途的除草剂,可以有效地治理稗草,同时在出苗后和土壤施用后对水稻幼苗表现出耐受性。对合成化合物的毒性预测进行了评估,包括对鱼类(LC50: 0.0001至38.1 mg/L)、水蚤(LC50: 0.0001至27.7 mg/L)和绿藻(EC50: 0.0001至1.70 mg/L)的毒性预测,包括慢性毒性(ChV)。使用ECOSAR模型,评估发现短链化合物在可接受的范围内。化合物6a与HPPD的结合自由能相对较低(-8.3),这与生物测定活性研究结果一致。因此,化合物6a可以作为开发新型HPPD抑制剂的起点。
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引用次数: 0
Cas12a/crRNA Recognition Catalyzed Triple Self-Priming Cascade Amplification Strategy for Sensitive and Reliable Drug Resistance Gene Analysis. Cas12a/crRNA识别催化三重自引级联扩增策略用于敏感可靠的耐药基因分析。
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-08-03 DOI: 10.1007/s12010-026-05822-7
Zifei Chen, Jiongming You

Rapid and accurate detection of methicillin-resistant Staphylococcus aureus (MRSA) is crucial for guiding antimicrobial therapy and improving outcomes in infection management, including postoperative care and surgical site infections. Conventional detection methods often suffer from lengthy turnaround times, operational complexity, or limited specificity. To address these challenges, we developed a novel, integrated biosensing platform termed the Cas12a/crRNA-initiated triple self-priming cascade amplification assay for ultrasensitive and specific analysis of the mecA resistance gene. The innovation of this strategy lies in the synergistic combination of CRISPR-Cas12a for high-fidelity target recognition and an elegantly engineered isothermal amplification circuit. Target-specific activation of Cas12a triggers the trans-cleavage of a designed probe, remaining an RNA initiator that sets off a triple self-priming cascade amplification within a single, multifunctional Y-shaped probe (Y-probe). This integrated probe architecture eliminates the need for multiple independent components, significantly simplifying the workflow and enhancing assay stability. Amplification culminates in the generation of G-quadruplex (G4) structures, which are detected through a label-free turn-on fluorescence signal using thioflavin T (ThT), thereby avoiding the instability associated with covalently labeled probes. The assay demonstrated exceptional analytical performance, achieving a detection limit of 0.41 fM for synthetic mecA DNA and 5.2 CFU/mL for viable MRSA cells, with a linear range spanning five to six orders of magnitude. It exhibited high specificity, successfully discriminating MRSA from methicillin-susceptible Staphylococcus aureus and distinguishing single-base mismatches. By integrating precise CRISPR recognition, a streamlined and stable all-in-one probe design, and a robust label-free readout, the platform presents a powerful, user-friendly molecular tool for resistance genotyping, with potential for future application in clinical settings, such as postoperative infection management.

快速准确地检测耐甲氧西林金黄色葡萄球菌(MRSA)对于指导抗菌药物治疗和改善感染管理结果(包括术后护理和手术部位感染)至关重要。传统的检测方法往往存在周转时间长、操作复杂或特异性有限的问题。为了解决这些挑战,我们开发了一种新的集成生物传感平台,称为Cas12a/ crrna启动的三重自引级联扩增试验,用于超灵敏和特异性分析mecA抗性基因。该策略的创新之处在于将用于高保真目标识别的CRISPR-Cas12a与精心设计的等温扩增电路协同结合。Cas12a的靶特异性激活触发设计探针的反式切割,保留一个RNA启动器,在单个多功能y形探针(y探针)内引发三重自引级联扩增。这种集成探针架构消除了对多个独立组件的需求,大大简化了工作流程并提高了分析稳定性。扩增最终产生g -四重体(G4)结构,通过使用硫黄素T (ThT)的无标记开启荧光信号检测,从而避免了与共价标记探针相关的不稳定性。该方法具有优异的分析性能,对合成mecA DNA的检测限为0.41 fM,对活的MRSA细胞的检测限为5.2 CFU/mL,线性范围为5到6个数量级。它具有很高的特异性,成功地区分了MRSA和甲氧西林敏感金黄色葡萄球菌,并区分了单碱基错配。通过集成精确的CRISPR识别,流线型和稳定的一体化探针设计,以及强大的无标签读取,该平台提供了一个强大的,用户友好的分子工具,用于耐药基因分型,具有未来应用于临床环境的潜力,如术后感染管理。
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引用次数: 0
Integrated in Vitro and in Silico Investigation of Antimicrobial, Anti-biofilm, and Quorum-Sensing Inhibitory Activities of Allium atroviolaceum Bulb Extract. 葱茎提取物抑菌活性、抗生物膜活性和群体感应抑制活性的体外和室内综合研究。
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-08-31 DOI: 10.1007/s12010-026-05890-9
Khulood Fahad Alabbosh, Mejdi Snoussi, Manal Mohammed Alzahrani, Qusai Alsenani, Karim Hosni, Mamdouh Alshammari, Ozgur Ceylan, Abdullah Hamoud Mohsen Alkhiyari, Mongi Saoudi, Emira Noumi, Adel Kadri

The growing burden of antimicrobial resistance (AMR) and the persistence of biofilm-associated and quorum-sensing-mediated infections represent major public health challenges, highlighting the need for new anti-infective agents from natural sources. In this context, Allium atroviolaceum is recognized for its culinary and medicinal uses, remains relatively underexplored with respect to its anti-virulence potential, despite biological activities previously attributed to its organosulfur and phenolic constituents. In this study, ethanolic Allium atroviolaceum bulb extract (EAABE) was investigated for its antimicrobial, antibiofilm, and anti-quorum sensing (QS) activities. HR-LCMS analysis tentatively annotated 19 metabolites, including organic acids, phenolics, triterpenoids, fatty acids, glycosides, alkaloids, sphingolipids, steroid derivatives, and peptide-type compounds. EAABE demonstrated moderate antibacterial effects, with inhibition zones ranging from 6.00 to 7.33 mm and MIC values between 0.292 and 2.343 mg/mL. In contrast, a relatively enhanced antifungal activity was observed, with inhibition zones of 12.67-15.00 mm and MIC values of 0.292-0.585 mg/mL. The extract also inhibited biofilm formation in a dose-dependent manner, achieving up to a 56.91% reduction, while swarming motility was reduced by up to 64.13%. In addition, EAABE significantly attenuated QS-regulated virulence traits in a concentration-dependent manner. Violacein production was reduced by 67-86% at concentrations of 250-1000 µg/mL, whereas swarming motility was inhibited by 29 to 64% at 50-100 µg/mL. Similarly, pyocyanin production and extracellular proteases activity were reduced by 67-90% and 29-46%, respectively, across the concentration range of 250-1000 µg/mL. Molecular docking analysis predicted favorable binding affinities for several tentatively annotated metabolites, ranging from - 7.9 to - 12.4 kcal/mol, with Gravelliferone, Americine, and (2'S)-Deoxymyxol 2'-α-L-fucoside as compounds with favorable predicted binding affinities toward the selected targets. These interactions were further supported by 100 ns molecular dynamics simulations. ADMET predictions and DFT calculations provided further insights into the physicochemical, predicted pharmacokinetic, and electronic properties of the tentatively annotated metabolites. Overall, the findings indicate that EAABE exhibits promising in vitro antimicrobial and anti-virulence activities; however, further isolation of individual constituents, experimental validation, and mechanistic investigations are needed to clarify the specific contribution of each metabolite to the observed effects.

抗菌素耐药性(AMR)负担的日益加重以及生物膜相关感染和群体感应介导感染的持续存在是重大的公共卫生挑战,突出表明需要从天然来源获得新的抗感染药物。在这种情况下,尽管以前认为其有机硫和酚类成分具有生物活性,但atroviolaceum因其烹饪和药用用途而得到认可,其抗毒潜力仍相对未得到充分开发。本研究对乙醇性葱茎提取物(EAABE)的抑菌活性、抗生物膜活性和抗群体感应活性进行了研究。HR-LCMS分析初步注释了19种代谢物,包括有机酸、酚类、三萜、脂肪酸、苷类、生物碱、鞘脂、类固醇衍生物和肽型化合物。EAABE表现出中等抑菌效果,抑菌范围为6.00 ~ 7.33 mm, MIC值为0.292 ~ 2.343 mg/mL。相比之下,抑菌活性相对增强,抑制区为12.67 ~ 15.00 mm, MIC值为0.292 ~ 0.585 mg/mL。该提取物还以剂量依赖的方式抑制生物膜的形成,达到56.91%的减少,而蜂群运动减少高达64.13%。此外,EAABE以浓度依赖性的方式显著减弱了qs调控的毒力性状。在250 ~ 1000µg/mL的浓度下,紫紫素的产量降低了67 ~ 86%,而在50 ~ 100µg/mL的浓度下,群体运动被抑制了29 ~ 64%。同样,在250-1000µg/mL浓度范围内,pyocyanin产量和胞外蛋白酶活性分别降低67-90%和29-46%。分子对接分析预测了几种初步注释的代谢物的良好结合亲和力,范围在- 7.9至- 12.4 kcal/mol之间,其中Gravelliferone, Americine和(2s)- deoxymyxol 2'-α- l - focuside是对所选靶标具有良好结合亲和力的化合物。这些相互作用得到了100 ns分子动力学模拟的进一步支持。ADMET预测和DFT计算为初步注释的代谢物的物理化学、预测药代动力学和电子特性提供了进一步的见解。总之,研究结果表明,EAABE具有良好的体外抗菌和抗毒活性;然而,需要进一步分离单个成分,实验验证和机制研究来阐明每种代谢物对观察到的效果的具体贡献。
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引用次数: 0
Estimated Binding Affinities of Polyphenolic Compounds into the Human Peroxiredoxin 5 and the SARS-CoV-2 main Protease Binding Sites: In Silico Approach. 多酚类化合物与人过氧化物还氧蛋白5和SARS-CoV-2主要蛋白酶结合位点的结合亲和力:计算机模拟方法
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-07-29 DOI: 10.1007/s12010-026-05852-1
El Hassane Anouar, Magdy M D Mohammed, Zuhra Bashir Trabalsiy, Insaf Filali, Abdulrahman I Alharthi, Amany M A Osman

Polyphenols are secondary metabolites of plants. They have potential health benefits as antioxidants and protection against the development of cancers, cardiovascular disease, and diabetes. Herein, the inhibitory potential of a series of 35 simple phenols, flavone, flavonol, flavanone, dihyrdoflavanol, flavan-3-ol, anthocyanidin, isoflavone, chalcone, silybins polyphenolics against (i) the main protease of (Mpro) of SARS-CoV-2, the enzyme involved in COVID-19 viral replication and infection, and (ii) the human peroxiredoxin 5 the antioxidant enzyme has been investigated by estimating their binding affinities by means molecular docking, molecular dynamics simulation, and by evaluating their pharmacokinetic, and the drug-likeness properties through the ADMET study. Further, the structure-activity relationship of the effects of the number of hydroxyl groups, the presence of unsaturated double bonds, the substitution of hydroxyl groups, the opening of the C-ring, and the position of the B-ring on the main protease (Mpro) and the human peroxiredoxin 5 inhibition has been discussed.

多酚是植物的次生代谢产物。它们具有潜在的抗氧化剂和预防癌症、心血管疾病和糖尿病发展的健康益处。本文采用分子对接、分子动力学模拟等方法,研究了35种简单酚类化合物(黄酮、黄酮醇、黄酮酮、二羟基黄烷醇、黄烷-3-醇、花青素、异黄酮、查尔酮、水飞虫多酚类)对SARS-CoV-2主要蛋白酶(Mpro)(参与COVID-19病毒复制和感染的酶)和人过氧化物还蛋白5(抗氧化酶)的抑制潜力。并通过ADMET研究来评估它们的药代动力学和药物相似性。进一步讨论了羟基数目、不饱和双键的存在、羟基取代、c环开度和b环位置对主蛋白酶(Mpro)和人过氧化物还氧蛋白5抑制作用的构效关系。
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引用次数: 0
Comparative Therapeutic Effects of Lipid-Enriched and Ethanolic Garlic Extracts on DMBA-Induced Hepatic Carcinogenesis in Mice. 富脂大蒜提取物和乙醇大蒜提取物对dba诱导小鼠肝癌的治疗效果比较。
IF 3.5 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-11-01 Epub Date: 2026-09-02 DOI: 10.1007/s12010-026-05881-w
Abdallah Saif Abdelaziz, Magdy M Youssef, Manar Refaat

Garlic (Allium sativum) contains bioactive components with antioxidants and anti-inflammatory constituents with potential anticancer activity. We aimed to compare a petroleum-ether garlic extract (PEGE) versus an ethanolic garlic extract (EGE) in a DMBA-induced murine hepatic carcinogenesis model. Fresh garlic was extracted with petroleum ether or ethanol and chemically characterized by GC-MS. PEGE was enriched in long-chain fatty acids/derivatives, while EGE contained both lipids and more polar constituents. Male Swiss albino mice received DMBA and were assigned to concurrent (DMBA + extract) or post-DMBA (DMBA → extract) regimens; extract-only and vehicle groups served as toxicity controls. Biochemical parameters (ALT, AST, AFP), oxidative stress markers (MDA, GSH), inflammatory signaling (NF-κB by ELISA), apoptosis (caspase-3 gene expression by qPCR), proliferation (PCNA by flow cytometry), and histopathological changes (H&E staining) were evaluated. Extract-only showed no significant differences compared to control groups, indicating no overt toxicity. DMBA administration resulted in significant hepatic injury, evidenced by elevated liver enzymes and AFP, increased lipid peroxidation and NF-κB levels, depleted GSH, enhanced cellular proliferation, and severe histopathological alterations. Across endpoints, the post-DMBA PEGE regimen produced the largest overall normalization, followed by EGE. Post-treatment outperforming concurrent dosing for both extracts. Histology aligned the biochemical trends, showing reduced necrosis, inflammation, vascular congestion, and dysplastic changes in treated groups. Both garlic extracts showed hepatoprotective effects in this preclinical model; they were well tolerated and mitigated DMBA-induced injury, with PEGE given after DMBA yielding the strongest biochemical, molecular, and histopathological improvements. Chemical differences between the lipid-rich PEGE and the more polar EGE likely contribute to their differential efficacy and merit further standardization and mechanistic study.

大蒜(Allium sativum)含有抗氧化剂和抗炎成分的生物活性成分,具有潜在的抗癌活性。我们的目的是比较石油醚大蒜提取物(PEGE)和乙醇大蒜提取物(EGE)在dmba诱导的小鼠肝癌模型中的作用。用石油醚或乙醇提取新鲜大蒜,采用气相色谱-质谱法对大蒜进行化学表征。PEGE富含长链脂肪酸/衍生物,而EGE含有脂质和更多极性成分。雄性瑞士白化小鼠接受DMBA治疗,并分为并行(DMBA +提取物)或后DMBA (DMBA→提取物)方案;仅提取液组和对照物组作为毒性对照。观察生化指标(ALT、AST、AFP)、氧化应激指标(MDA、GSH)、炎症信号(ELISA法检测NF-κB)、细胞凋亡(qPCR检测caspase-3基因表达)、细胞增殖(流式细胞术检测PCNA)和组织病理学变化(H&E染色)。与对照组相比,纯提取物组没有显着差异,表明没有明显的毒性。DMBA给药导致肝损伤,表现为肝酶和AFP升高,脂质过氧化和NF-κB水平升高,GSH减少,细胞增殖增强,以及严重的组织病理学改变。在各个终点,dmba后PEGE方案产生了最大的总体正常化,其次是EGE。处理后优于同时给药的两种提取物。组织学与生化趋势一致,显示治疗组坏死、炎症、血管充血和发育不良改变减少。在这个临床前模型中,两种大蒜提取物都显示出肝保护作用;它们具有良好的耐受性并减轻了DMBA诱导的损伤,在DMBA后给予PEGE可产生最强的生化,分子和组织病理学改善。脂质丰富的PEGE和极性更强的EGE之间的化学差异可能导致它们的疗效差异,值得进一步标准化和机制研究。
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引用次数: 0
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