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Rational Control of Maximum EMI/CPL Intensity and Wavelength of Bora[6]helicene via Polarity and Vibronic Effects. 通过极性和振动效应合理控制 Bora[6]helicene 的最大 EMI/CPL 强度和波长。
IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-22 DOI: 10.1021/acs.jpclett.4c02500
Yanli Liu, Qiushuang Xu, Li Wang, Aihua Gao, Quanjiang Li, Shenghui Chen, Yanliang Zhao, Meishan Wang, Jun Jiang, Chuanyi Jia

Solvent polarity control as an efficient methodology to regulate the chiroptical properties, including spectral shape, width, intensity, wavelength, etc., has emerged as a novel frontier in optical materials design. However, the underling relationship connecting polarity to the optical property remains unclear. Herein, using state-of-the-art computations and the FC|VG model, the solvent effect on the chiroptical properties of bora[6]helicene was accurately and systematically computed to shed light on this issue. It is found that the vibronic coupling is crucial in explaining the spectral shape, width, and relative intensity of different peaks. Moreover, the intensity and position of the emission (EMI) and circularly polarized luminescence (CPL) are closely related to the polarity of the solvent. Intriguingly, we got a series of good linear relationships between polarity and EMI|CPL (|r| ≥ 0.95). Thus, this parameter can be used as a potential descriptor to estimate the intensity and position of EMI|CPL, leading to new strategies for designing fully colored fluorescent materials.

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引用次数: 0
Synergistic Design of Imidazole-Based Polymer Donors for Enhanced Organic Solar Cell Efficiency
IF 6.475 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-22 DOI: 10.1021/acs.jpclett.4c02676
Dongsheng Qiu, Waqar Ali Memon, Hanjian Lai, Yunpeng Wang, Heng Li, Nan Zheng, Feng He
Within the realm of organic solar cells (OSCs), designing new high-efficiency polymer donors remains a significant challenge. Achieving the right balance in polymer backbone planarity is crucial: excessive planarity can lead to undesirable aggregation, while insufficient planarity can hinder the charge transport efficiency. In this study, we designed and synthesized an imidazole-based acceptor (A) unit for the first time and then investigated the impact of backbone planarity on charge transport capacity and power conversion efficiency (PCE). Backbone planarity was precisely tuned by incorporating isomeric alkyl chains on the thiophene π-bridge, resulting in four distinct polymer donors: MZC8-F, MZC8-Cl, MZEH-F, and MZEH-Cl. The results showed that the steric hindrance from the EH-branched alkyl chain induced backbone distortion and caused a blue-shift in the absorption spectrum. MZEH-Cl, with its poor planarity and excessively low HOMO energy level, achieved a PCE of just 7.6%. Through careful modulation, MZC8-Cl emerged as the most efficient, with a remarkable PCE of 17.3%, setting a new benchmark for imidazole-based polymer donors. This study not only deepens the understanding of the role of polymer backbone planarity in photovoltaic performance but also lays the groundwork for developing high-efficiency polymer donors.
在有机太阳能电池(OSC)领域,设计新型高效聚合物供体仍然是一项重大挑战。实现聚合物骨架平面度的适当平衡至关重要:过度的平面度会导致不良聚集,而平面度不足则会阻碍电荷传输效率。在这项研究中,我们首次设计并合成了一种咪唑基受体(A)单元,然后研究了骨架平面度对电荷传输能力和功率转换效率(PCE)的影响。通过在噻吩π桥上加入异构烷基链,对骨架平面度进行了精确调整,从而产生了四种不同的聚合物供体:MZC8-F、MZC8-Cl、MZEH-F 和 MZEH-Cl。结果表明,EH-支化烷基链的立体阻碍引起了骨架畸变,导致吸收光谱蓝移。MZEH-Cl 的平面性较差,HOMO 能级过低,其 PCE 值仅为 7.6%。经过精心调制,MZC8-Cl 成为最高效的供体,其 PCE 达到了 17.3%,为咪唑类聚合物供体树立了新的标杆。这项研究不仅加深了人们对聚合物骨架平面性在光伏性能中作用的理解,还为开发高效聚合物供体奠定了基础。
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引用次数: 0
Bond Dissociation Energy of CO2 with Spectroscopic Accuracy Using State-to-State Resolved Threshold Fragment Yield Spectra. 利用态对态分辨阈值碎片产率光谱精确计算 CO2 的键解离能。
IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-22 DOI: 10.1021/acs.jpclett.4c02638
Shiyan Gong, Peng Wang, Yuxiang Mo

In this study, we present a precise determination of the bond dissociation energy of CO2 using state-to-state resolved threshold fragment yield spectra at a photoexcitation wavelength of around 92 nm. Our findings show that the bond dissociation energy of CO2, CO2 → CO + O, is 43976.12(15) cm-1 or 526.0714(18) kJ/mol. Furthermore, by incorporating our previously measured bond dissociation energies for CO and O2, we determined the dissociation energy of CO2 into C + O2 and the CO2 atomization energy (CO2 → C + O + O) to be 92309.73(21) and 133578.92(18) cm-1 or 1104.2699(25) and 1597.9592(22) kJ/mol, respectively. Thus, the bond dissociation energies of CO2 for all channels now have uncertainties of 0.2 cm-1 or 0.002 kJ/mol. These results serve as reference points for the enthalpies of C atom and CO and CO2 molecules and provide benchmarks for high-level ab initio quantum chemistry calculations.

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引用次数: 0
Extracting the Heterogeneous 3D Structure of Molecular Films Using Higher Dimensional SFG Microscopy.
IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-22 DOI: 10.1021/acs.jpclett.4c02679
Alexander P Fellows, Ben John, Martin Wolf, Martin Thämer

Ultrathin molecular films are widespread in both natural and industrial settings, where details of the molecular structure such as density, out-of-plane tilt angles, and in-plane directionality determine their physicochemical properties. Many of these films possess important molecular-to-macroscopic heterogeneity in these structural parameters, which have traditionally been difficult to characterize. Here, we show how extending sum-frequency generation (SFG) microscopy measurements to higher dimensionality by azimuthal-scanning can extract the spatial variation in the three-dimensional molecular structure at an interface. We extend the commonly applied theoretical assumptions used to analyze SFG signals to the study of systems possessing in-plane anisotropy. This theoretical framework is then applied to a phase-separated mixed lipid monolayer to investigate the variation in molecular density and 3D orientation across the chirally packed lipid domains. The results show little variation in out-of-plane structure but a distinct micron-scale region at the domain boundaries with a reduction in both density and in-plane ordering.

超薄分子薄膜广泛存在于自然界和工业环境中,分子结构的细节(如密度、面外倾斜角和面内方向性)决定了它们的物理化学特性。在这些结构参数中,许多薄膜都具有重要的分子到显微镜的异质性,而这在传统上是很难表征的。在这里,我们展示了如何通过方位角扫描将总频发生(SFG)显微镜测量扩展到更高维度,从而提取界面上三维分子结构的空间变化。我们将用于分析 SFG 信号的常用理论假设扩展到具有面内各向异性的系统研究。然后将这一理论框架应用于相分离的混合脂质单层,以研究分子密度和三维取向在整个手性堆积脂质域中的变化。结果表明,平面外结构的变化很小,但在结构域边界有一个明显的微米尺度区域,密度和平面内有序性都有所降低。
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引用次数: 0
When a Twist Makes a Difference: Exploring PCET and ESIPT on a Nonplanar Hydrogen-Bonded Donor-Acceptor System. 转折带来改变:在非平面氢键供体-受体系统上探索 PCET 和 ESIPT。
IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-22 DOI: 10.1021/acs.jpclett.4c02141
Emmanuel Odella, Jonathan H Fetherolf, Maxim Secor, Lydia DiPaola, Rodrigo E Dominguez, Edwin J Gonzalez, Anton Y Khmelnitskiy, Gerdenis Kodis, Thomas L Groy, Thomas A Moore, Sharon Hammes-Schiffer, Ana L Moore

Bioinspired benzimidazole-phenol constructs with an intramolecular hydrogen bond connecting the phenol and the benzimidazole have been synthesized to study both proton-coupled electron transfer (PCET) and excited-state intramolecular proton transfer (ESIPT) processes. Strategic incorporation of a methyl group disrupts the coplanarity between the aromatic units, causing a pronounced twist, weakening the intramolecular hydrogen bond, decreasing the phenol redox potential, reducing the chemical reversibility, and quenching the fluorescence emission. Infrared spectroelectrochemistry and transient absorption spectroscopy confirm the formation of the oxidized product upon PCET and probe excited-state relaxation mechanisms, respectively. Density functional theory calculations of redox potentials corroborate the experimental findings. Additionally, time-dependent density functional theory calculations uncover the fluorescence quenching mechanism, showing that the nonradiative twisted intramolecular charge transfer state responsible for fluorescence quenching is more energetically favorable in the methyl-substituted system. Incorporating groups causing steric hindrance expands the design of biomimetic systems capable of performing both PCET and ESIPT.

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引用次数: 0
Environment- and Conformation-Induced Frequency Shifts of C-D Vibrational Stark Probes in NAD(P)H Cofactors.
IF 4.8 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-22 DOI: 10.1021/acs.jpclett.4c02497
Steven D E Fried, Srijit Mukherjee, Yuezhi Mao, Steven G Boxer

NAD(P)H cofactors are found in all forms of life and are essential for electron and hydrogen atom transfer. The linear response of a carbon-deuterium (C-D) vibration based on the vibrational Stark effect can facilitate measurements of electric fields for critical biological reactions including cofactor-mediated hydride transfer. We find both inter- and intramolecular electric fields influence the C-D frequency in NAD(P)H and nicotinamide-like models where the reactive C4-hydrogen has been deuterated. Hence, the C-D frequency can report both environmental electrostatics and conformational changes of the nicotinamide ring. Conformation-dependent effects are mediated through space as electrostatic effects, rather than through-bond. A Stark tuning rate of ∼0.57 cm-1/(MV/cm) was determined using both experimental and computational approaches, including vibrational solvatochromism, molecular dynamics simulations, and in silico Stark calculations. The vibrational probe's Stark tuning rate is shown to be robust and suitable for measuring fields along hydride transfer reaction coordinates in enzymes.

NAD(P)H 辅因子存在于所有生命形式中,是电子和氢原子转移所必需的。基于振动斯塔克效应的碳-氘(C-D)振动的线性响应有助于测量包括辅助因子介导的氢化物转移在内的关键生物反应的电场。我们发现分子间和分子内电场都会影响 NAD(P)H 和烟酰胺类模型中的 C-D 频率,其中反应性 C4 氢已被氚化。因此,C-D 频率可以报告环境静电和烟酰胺环的构象变化。构象依赖效应是通过空间静电效应而不是通过键来介导的。通过实验和计算方法,包括振动溶色法、分子动力学模拟和硅学斯塔克计算,确定了斯塔克调谐率为 ∼0.57 cm-1/(MV/cm) 。结果表明,振动探针的斯塔克调谐率非常稳健,适用于测量酶中氢化物转移反应坐标的场。
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引用次数: 0
Large Magnetic Anisotropy in van der Waals Ferromagnet Fe3GaTe2 above Room Temperature 室温以上范德华铁磁体 Fe3GaTe2 中的大磁各向异性
IF 6.475 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-21 DOI: 10.1021/acs.jpclett.4c02426
Yilian Xi, Hanqing Shi, Jingwei Zhang, Heping Li, Ningyan Cheng, Hang Xu, Jiaqi Liu, Keren Li, Huaiming Guo, Haifeng Feng, Jianfeng Wang, Weichang Hao, Yi Du
Discoveries of above-room-temperature intrinsic ferromagnetism in two-dimensional (2D) van der Waals (vdW) materials offer a platform for studying fundamental 2D magnetism and spintronic devices, especially the recently discovered above-room-temperature 2D vdW Fe3GaTe2 (FGaT). However, the magnetic mechanism in FGaT remains elusive. Here, a detailed investigation using magnetic force microscopy on the thickness-dependent magnetic behavior of FGaT single crystals is reported. The Heisenberg exchange interaction constant (J) at room temperature is determined to be 1.32836 × 10–12 J/m. Our study combining angle-resolved photoemission spectroscopy and density functional theory suggests that the high Curie temperature in FGaT is attributed to the shift of the localized Fe d band toward the Fermi level as well as the enhanced magnetic exchange effect due to the strong itinerant ability of Fe. This work sheds light on the understanding of magnetism in FGaT and provides a promising platform to investigate the mechanisms of 2D magnetic materials.
在二维范德华(vdW)材料中发现的高于室温的本征铁磁性为研究基本的二维磁性和自旋电子器件提供了一个平台,特别是最近发现的高于室温的二维范德华 Fe3GaTe2(FGaT)。然而,FGaT 中的磁机制仍然难以捉摸。本文报告了利用磁力显微镜对 FGaT 单晶随厚度变化的磁性行为进行的详细研究。室温下的海森堡交换相互作用常数 (J) 被确定为 1.32836 × 10-12 J/m。我们结合角度分辨光发射光谱和密度泛函理论进行的研究表明,FGaT 的高居里温度归因于局部铁 d 带向费米级的移动,以及铁的强巡回能力导致的磁交换效应的增强。这项研究揭示了对 FGaT 磁性的理解,为研究二维磁性材料的机理提供了一个前景广阔的平台。
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引用次数: 0
Nucleoprotein Phase-Separation Affinities Revealed via Atomistic Simulations of Short Peptide and RNA Fragments 通过对短肽和 RNA 片段的原子模拟揭示核蛋白相分离亲和力
IF 6.475 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-21 DOI: 10.1021/acs.jpclett.4c02654
Vysakh Ramachandran, William Brown, Christopher Gayvert, Davit A. Potoyan
Liquid–liquid phase separation of proteins and nucleic acids into condensate phases is a versatile mechanism for ensuring the compartmentalization of cellular biochemistry. RNA molecules play critical roles in these condensates, particularly in transcriptional regulation and stress responses, exhibiting a wide range of thermodynamic and dynamic behaviors. However, deciphering the molecular grammar that governs the stability and dynamics of protein–RNA condensates remains challenging due to the multicomponent and heterogeneous nature of condensates. In this study, we employ atomistic simulations of 20 distinct mixtures containing minimal RNA and peptide fragments which allows us to dissect the phase-separating affinities of all 20 amino acids in the presence of RNA. Our findings elucidate chemically specific interactions, hydration profiles, and ionic effects that synergistically promote or suppress protein–RNA phase separation. We map a ternary phase diagram of interactions, identifying four distinct groups of residues that promote, maintain, suppress, and disrupt protein–RNA clusters.
将蛋白质和核酸液-液相分离成凝聚相是确保细胞生物化学分区的一种多功能机制。RNA 分子在这些凝聚相中发挥着关键作用,特别是在转录调控和应激反应中,表现出多种热力学和动力学行为。然而,由于缩聚物的多组分和异质性质,破译支配蛋白质-RNA 缩聚物稳定性和动态的分子结构仍然具有挑战性。在这项研究中,我们对 20 种不同的混合物进行了原子模拟,这些混合物包含最小的 RNA 和肽片段,这使我们能够剖析所有 20 种氨基酸在 RNA 存在下的相分离亲和力。我们的研究结果阐明了协同促进或抑制蛋白质-RNA 相分离的化学特异性相互作用、水合曲线和离子效应。我们绘制了三元相互作用相图,确定了促进、维持、抑制和破坏蛋白质-RNA 簇的四组不同的残基。
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引用次数: 0
Bidirectional Allostery Mechanism in Catch-Bond Formation of CD44 Mediated Cell Adhesion CD44 介导的细胞粘附捕捉键形成过程中的双向异位机制
IF 6.475 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-21 DOI: 10.1021/acs.jpclett.4c02598
Xingyue Guan, Yunqiang Bian, Zilong Guo, Jian Zhang, Yi Cao, Wenfei Li, Wei Wang
Catch-bonds, whereby noncovalent ligand–receptor interactions are counterintuitively reinforced by tensile forces, play a major role in cell adhesion under mechanical stress. A basic prerequisite for catch-bond formation, as implicated in classic catch-bond models, is that force-induced remodeling of the ligand binding interface occurs prior to bond rupture. However, what strategy receptor proteins utilize to meet such specific kinetic control remains elusive. Here we report a bidirectional allostery mechanism of catch-bond formation based on theoretical and molecular dynamics simulation studies. Binding of ligand allosterically reduces the threshold force for unlocking of otherwise stably folded force-sensing element (i.e., forward allostery), so that a much smaller tensile force can trigger the conformational switching of receptor protein to high binding-strength state via backward allosteric coupling before bond rupture. Such bidirectional allostery fulfills the specific kinetic control required by catch-bond formation and is likely to be commonly utilized in cell adhesion. The essential thermodynamic and kinetic features of receptor proteins essential for catch-bond formation were identified.
接合键(Catch-bonds)是配体与受体之间的非共价相互作用在拉伸力的作用下得到强化的一种反常现象,在机械应力作用下的细胞粘附中发挥着重要作用。正如经典的捕捉键模型所暗示的那样,捕捉键形成的一个基本前提是,在键断裂之前,配体结合界面在力的诱导下发生重塑。然而,受体蛋白利用什么策略来满足这种特定的动力学控制仍然是个谜。在此,我们基于理论和分子动力学模拟研究,报告了捕捉键形成的双向异构机制。配体的结合异生降低了原本稳定折叠的力感应元件解锁的阈值力(即前向异生),因此在键断裂之前,更小的拉力就能通过后向异生耦合触发受体蛋白构象转换到高结合强度状态。这种双向异位作用满足了捕捉键形成所需的特定动力学控制,很可能被普遍用于细胞粘附。研究人员确定了对接合键形成至关重要的受体蛋白的基本热力学和动力学特征。
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引用次数: 0
Conductance Channels in a Single-Entity Enzyme 单实体酶中的传导通道
IF 6.475 2区 化学 Q2 CHEMISTRY, PHYSICAL Pub Date : 2024-10-21 DOI: 10.1021/acs.jpclett.4c01796
Rafael Neri Prystaj Colombo, Steffane Q. Nascimento, Frank Nelson Crespilho
For a long time, the prevailing view in the scientific community was that proteins, being complex macromolecules composed of amino acid chains linked by peptide bonds, adopt folded structure with insulating or semiconducting properties, with high bandgaps. However, recent discoveries of unexpectedly high conductance levels, reaching values in the range of dozens of nanosiemens (nS) in proteins, have challenged this conventional understanding. In this study, we used scanning tunneling microscopy (STM) to explore the single-entity conductance properties of enzymatic channels, focusing on bilirubin oxidase (BOD) as a model metalloprotein. By immobilizing BOD on a conductive carbon surface, we discern its preferred orientation, facilitating the formation of electronic and ionic channels. These channels show efficient electron transport (ETp), with apparent conductance up to the 15 nS range. Notably, these conductance pathways are localized, minimizing electron transport barriers due to solvents and ions, underscoring BOD’s redox versatility. Furthermore, electron transfer (ET) within the BOD occurs via preferential pathways. The alignment of the conductance channels with hydrophilicity maps, molecular vacancies, and regions accessible to electrolytes explains the observed conductance values. Additionally, BOD exhibits redox activity, with its active center playing a critical role in the ETp process. These findings significantly advance our understanding of the intricate mechanisms that govern ETp processes in proteins, offering new insights into the conductance of metalloproteins.
长期以来,科学界普遍认为,蛋白质是由肽键连接的氨基酸链组成的复杂大分子,其折叠结构具有绝缘或半导体特性,并具有高带隙。然而,最近在蛋白质中发现了意想不到的高电导水平,其值达到数十纳西门子(nS),这对传统认识提出了挑战。在这项研究中,我们使用扫描隧道显微镜(STM)探索了酶通道的单实体电导特性,重点研究了作为金属蛋白模型的胆红素氧化酶(BOD)。通过将胆红素氧化酶固定在导电碳表面,我们发现了它的优先取向,从而促进了电子和离子通道的形成。这些通道显示出高效的电子传输(ETp),表观电导可达 15 nS。值得注意的是,这些传导通道是局部的,最大程度地减少了溶剂和离子造成的电子传输障碍,突出了 BOD 的氧化还原多功能性。此外,BOD 内的电子传递(ET)是通过优先途径进行的。电导通道与亲水性图谱、分子空位和电解质可接触区域的吻合解释了所观察到的电导值。此外,BOD 还具有氧化还原活性,其活性中心在 ETp 过程中发挥着关键作用。这些发现极大地推动了我们对支配蛋白质中 ETp 过程的复杂机制的理解,为我们提供了有关金属蛋白电导的新见解。
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引用次数: 0
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