Pub Date : 2025-12-01Epub Date: 2025-05-05DOI: 10.1007/s11571-025-10253-x
Firuze Damla Eryılmaz Baran, Meric Cetin
One of the areas where artificial intelligence (AI) technologies are used is the detection and diagnosis of mental disorders. AI approaches, including machine learning and deep learning models, can identify early signs of bipolar disorder, schizophrenia, autism spectrum disorder, depression, suicidality, and dementia by analyzing speech patterns, behaviors, and physiological data. These approaches increase diagnostic accuracy and enable timely intervention, which is crucial for effective treatment. This paper presents a comprehensive literature review of AI approaches applied to mental disorder detection using various data sources, such as survey, Electroencephalography (EEG) signal, text and image. Applications include predicting anxiety and depression levels in online games, detecting schizophrenia from EEG signals, detecting autism spectrum disorder, analyzing text-based indicators of suicidality and depression, and diagnosing dementia from magnetic resonance imaging images. eXtreme Gradient Boosting (XGBoost), light gradient-boosting machine (LightGBM), random forest (RF), support vector machine (SVM), K-nearest neighbor were designed as machine learning models, and convolutional neural networks (CNN), long short-term memory (LSTM) and gated recurrent unit (GRU) models suitable for the dataset were designed as deep learning models. Data preprocessing techniques such as wavelet transforms, normalization, clustering were used to optimize model performances, and hyperparameter optimization and feature extraction were performed. While the LightGBM technique had the highest performance with 96% accuracy for anxiety and depression prediction, the optimized SVM stood out with 97% accuracy. Autism spectrum disorder classification reached 98% accuracy with XGBoost, RF and LightGBM. The LSTM model achieved a high accuracy of 83% in schizophrenia diagnosis. The GRU model showed the best performance with 93% accuracy in text-based suicide and depression detection. In the detection of dementia, LSTM and GRU models have demonstrated their effectiveness in data analysis by reaching 99% accuracy. The findings of the study highlight the effectiveness of LSTM and GRU for sequential data analysis and their applicability in medical imaging or natural language processing. XGBoost and LightGBM are noted to be highly accurate ML tools for clinical diagnoses. In addition, hyperparameter optimization and advanced data pre-processing approaches are confirmed to significantly improve model performance. The results obtained with this study have revealed the potential to improve clinical decision support systems for mental disorders with AI, facilitating early diagnosis and personalized treatment strategies.
{"title":"AI-driven early diagnosis of specific mental disorders: a comprehensive study.","authors":"Firuze Damla Eryılmaz Baran, Meric Cetin","doi":"10.1007/s11571-025-10253-x","DOIUrl":"https://doi.org/10.1007/s11571-025-10253-x","url":null,"abstract":"<p><p>One of the areas where artificial intelligence (AI) technologies are used is the detection and diagnosis of mental disorders. AI approaches, including machine learning and deep learning models, can identify early signs of bipolar disorder, schizophrenia, autism spectrum disorder, depression, suicidality, and dementia by analyzing speech patterns, behaviors, and physiological data. These approaches increase diagnostic accuracy and enable timely intervention, which is crucial for effective treatment. This paper presents a comprehensive literature review of AI approaches applied to mental disorder detection using various data sources, such as survey, Electroencephalography (EEG) signal, text and image. Applications include predicting anxiety and depression levels in online games, detecting schizophrenia from EEG signals, detecting autism spectrum disorder, analyzing text-based indicators of suicidality and depression, and diagnosing dementia from magnetic resonance imaging images. eXtreme Gradient Boosting (XGBoost), light gradient-boosting machine (LightGBM), random forest (RF), support vector machine (SVM), K-nearest neighbor were designed as machine learning models, and convolutional neural networks (CNN), long short-term memory (LSTM) and gated recurrent unit (GRU) models suitable for the dataset were designed as deep learning models. Data preprocessing techniques such as wavelet transforms, normalization, clustering were used to optimize model performances, and hyperparameter optimization and feature extraction were performed. While the LightGBM technique had the highest performance with 96% accuracy for anxiety and depression prediction, the optimized SVM stood out with 97% accuracy. Autism spectrum disorder classification reached 98% accuracy with XGBoost, RF and LightGBM. The LSTM model achieved a high accuracy of 83% in schizophrenia diagnosis. The GRU model showed the best performance with 93% accuracy in text-based suicide and depression detection. In the detection of dementia, LSTM and GRU models have demonstrated their effectiveness in data analysis by reaching 99% accuracy. The findings of the study highlight the effectiveness of LSTM and GRU for sequential data analysis and their applicability in medical imaging or natural language processing. XGBoost and LightGBM are noted to be highly accurate ML tools for clinical diagnoses. In addition, hyperparameter optimization and advanced data pre-processing approaches are confirmed to significantly improve model performance. The results obtained with this study have revealed the potential to improve clinical decision support systems for mental disorders with AI, facilitating early diagnosis and personalized treatment strategies.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"70"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12052716/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143984171","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-03-09DOI: 10.1080/21645698.2025.2477231
Chelsea Sutherland, Savannah Gleim, Simona Lubieniechi, Stuart J Smyth
Genetically modified crop adoption in Canada has been the key driver in removing tillage as the lead form of weed control, due to increased weed control efficiency. Land use has transitioned from the use of summerfallow to continuous cropping, predominantly involving zero or minimum tillage practices. Prairie crop rotations have diversified away from mainly cereals to include three-year rotations of cereals, pulses, and oilseeds. Total herbicide volume applied has increased as crop production acres increased, but the rate of herbicide active ingredient applied per hectare has declined. Diverse crop rotations allow for weed control using herbicides with different modes of action, reducing selection pressure for resistant weed development. Herbicide-resistant weeds are an important concern for farmers, as the loss of key herbicides would make weed control exceedingly more difficult. The objective of this case study is to examine herbicide resistance weed development in the Canadian Prairies and to identify changes in resistance development following GM crop adoption.
{"title":"Rate of herbicide resistant weed development: A Canadian Prairie case study.","authors":"Chelsea Sutherland, Savannah Gleim, Simona Lubieniechi, Stuart J Smyth","doi":"10.1080/21645698.2025.2477231","DOIUrl":"10.1080/21645698.2025.2477231","url":null,"abstract":"<p><p>Genetically modified crop adoption in Canada has been the key driver in removing tillage as the lead form of weed control, due to increased weed control efficiency. Land use has transitioned from the use of summerfallow to continuous cropping, predominantly involving zero or minimum tillage practices. Prairie crop rotations have diversified away from mainly cereals to include three-year rotations of cereals, pulses, and oilseeds. Total herbicide volume applied has increased as crop production acres increased, but the rate of herbicide active ingredient applied per hectare has declined. Diverse crop rotations allow for weed control using herbicides with different modes of action, reducing selection pressure for resistant weed development. Herbicide-resistant weeds are an important concern for farmers, as the loss of key herbicides would make weed control exceedingly more difficult. The objective of this case study is to examine herbicide resistance weed development in the Canadian Prairies and to identify changes in resistance development following GM crop adoption.</p>","PeriodicalId":54282,"journal":{"name":"Gm Crops & Food-Biotechnology in Agriculture and the Food Chain","volume":"16 1","pages":"252-262"},"PeriodicalIF":4.5,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11901363/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143588195","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-03-22DOI: 10.1007/s11571-025-10235-z
Melahat Poyraz, Ahmet Kursad Poyraz, Yusuf Dogan, Selva Gunes, Hasan S Mir, Jose Kunnel Paul, Prabal Datta Barua, Mehmet Baygin, Sengul Dogan, Turker Tuncer, Filippo Molinari, Rajendra Acharya
The main aim of this study is to propose a novel convolutional neural network, named BrainNeXt, for the automated brain disorders detection using magnetic resonance images (MRI) images. Furthermore, we aim to investigate the performance of our proposed network on various medical applications. To achieve high/robust image classification performance, we gathered a new MRI dataset belonging to four classes: (1) Alzheimer's disease, (2) chronic ischemia, (3) multiple sclerosis, and (4) control. Inspired by ConvNeXt, we designed BrainNeXt as a lightweight classification model by incorporating the structural elements of the Swin Transformers Tiny model. By training our model on the collected dataset, a pretrained BrainNeXt model was obtained. Additionally, we have suggested a feature engineering (FE) approach based on the pretrained BrainNeXt, which extracted features from fixed-sized patches. To select the most discriminative/informative features, we employed the neighborhood component analysis selector in the feature selection phase. As the classifier for our patch-based FE approach, we utilized the support vector machine classifier. Our recommended BrainNeXt approach achieved an accuracy of 100% and 91.35% for training and validation. The recommended model obtained the test classification accuracy of 94.21%. To further improve the classification performance, we suggested a patch-based DFE approach, which achieved a test accuracy of 99.73%. The obtained results, surpassing 90% accuracy on the test dataset, demonstrate the effectiveness and high classification performance of the proposed models.
{"title":"BrainNeXt: novel lightweight CNN model for the automated detection of brain disorders using MRI images.","authors":"Melahat Poyraz, Ahmet Kursad Poyraz, Yusuf Dogan, Selva Gunes, Hasan S Mir, Jose Kunnel Paul, Prabal Datta Barua, Mehmet Baygin, Sengul Dogan, Turker Tuncer, Filippo Molinari, Rajendra Acharya","doi":"10.1007/s11571-025-10235-z","DOIUrl":"10.1007/s11571-025-10235-z","url":null,"abstract":"<p><p>The main aim of this study is to propose a novel convolutional neural network, named BrainNeXt, for the automated brain disorders detection using magnetic resonance images (MRI) images. Furthermore, we aim to investigate the performance of our proposed network on various medical applications. To achieve high/robust image classification performance, we gathered a new MRI dataset belonging to four classes: (1) Alzheimer's disease, (2) chronic ischemia, (3) multiple sclerosis, and (4) control. Inspired by ConvNeXt, we designed BrainNeXt as a lightweight classification model by incorporating the structural elements of the Swin Transformers Tiny model. By training our model on the collected dataset, a pretrained BrainNeXt model was obtained. Additionally, we have suggested a feature engineering (FE) approach based on the pretrained BrainNeXt, which extracted features from fixed-sized patches. To select the most discriminative/informative features, we employed the neighborhood component analysis selector in the feature selection phase. As the classifier for our patch-based FE approach, we utilized the support vector machine classifier. Our recommended BrainNeXt approach achieved an accuracy of 100% and 91.35% for training and validation. The recommended model obtained the test classification accuracy of 94.21%. To further improve the classification performance, we suggested a patch-based DFE approach, which achieved a test accuracy of 99.73%. The obtained results, surpassing 90% accuracy on the test dataset, demonstrate the effectiveness and high classification performance of the proposed models.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"53"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11929658/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143691190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-06-09DOI: 10.1007/s11571-025-10281-7
Vanesa Muñoz, Brenda Y Angulo-Ruiz, Carlos M Gómez
Recent studies combining electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS) have shown promising results linking neural and vascular responses. This study analyzes the topographical effect of auditory stimulus intensity on cortical activation and explores neurovascular coupling between fNIRS hemodynamic signals and auditory-evoked potentials (AEPs), extracted from EEG. Forty healthy volunteers (13 males, 27 females; mean age = 22.27 ± 3.96 years) listened to complex tones of varying intensities (50-, 70-, and 90-dB SPL) across seven frequencies (range of 400-2750 Hz) in blocks of five, while EEG and fNIRS were recorded. PERMANOVA analysis revealed that increasing intensity modulated hemodynamic activity, leading to amplitude changes and enhanced recruitment of auditory and prefrontal cortices. To isolate stimulus-specific activity, Spearman correlations were computed on residuals-components of AEPs and fNIRS responses with individual trends removed. The N1 amplitude increase was correlated with higher superior temporal gyrus (STG) and superior frontal gyrus (SFG) activity, and reduced activity in inferior frontal gyrus (IFG) for the oxygenated hemoglobin (HbO), while the deoxygenated hemoglobin (HbR) was associated with increased activity in one channel near the Supramarginal Gyrus (SMG). P2 amplitude increase was associated with higher activation in SFG and IFG for HbO, while for HbR with the activity in SMG, angular gyrus (AnG), SFG, and IFG. Additionally, internal correlations between fNIRS channels revealed strong associations within auditory and frontal regions. These findings provide insights into existing models of neurovascular coupling by showing how stimulus properties, such as intensity, modulate the relationship between neural activity and vascular responses.
Supplementary information: The online version contains supplementary material available at 10.1007/s11571-025-10281-7.
最近的研究结合了脑电图(EEG)和功能近红外光谱(fNIRS),显示了神经和血管反应之间的联系。本研究分析了听觉刺激强度对皮层激活的地形效应,并探讨了EEG提取的fNIRS血流动力学信号与听觉诱发电位(AEPs)之间的神经血管耦合。40名健康志愿者(男性13名,女性27名;平均年龄= 22.27±3.96岁),在7个频率(400-2750 Hz范围)中以5个为块,听不同强度(50、70和90 db SPL)的复杂音调,同时记录脑电图和近红外光谱。PERMANOVA分析显示,强度增加可调节血流动力学活动,导致振幅变化和听觉和前额叶皮质的增强。为了分离刺激特异性活动,在去除个体趋势后,计算残差(AEPs和fNIRS反应的成分)的Spearman相关性。N1振幅增加与颞上回(STG)和额上回(SFG)活性升高相关,下额回(IFG)中氧合血红蛋白(HbO)活性降低相关,而脱氧血红蛋白(HbR)与边缘上回(SMG)附近一个通道活性升高相关。HbO组P2振幅增加与SFG和IFG的高激活相关,而HbR组则与SMG、角回(AnG)、SFG和IFG的高激活相关。此外,fNIRS通道之间的内部相关性揭示了听觉和额叶区域之间的强烈联系。这些发现通过展示刺激特性(如强度)如何调节神经活动和血管反应之间的关系,为现有的神经血管耦合模型提供了见解。补充资料:在线版本提供补充资料,网址为10.1007/s11571-025-10281-7。
{"title":"Sound intensity-dependent cortical activation: implications of the electrical and vascular activity on auditory intensity.","authors":"Vanesa Muñoz, Brenda Y Angulo-Ruiz, Carlos M Gómez","doi":"10.1007/s11571-025-10281-7","DOIUrl":"10.1007/s11571-025-10281-7","url":null,"abstract":"<p><p>Recent studies combining electroencephalography (EEG) and functional near-infrared spectroscopy (fNIRS) have shown promising results linking neural and vascular responses. This study analyzes the topographical effect of auditory stimulus intensity on cortical activation and explores neurovascular coupling between fNIRS hemodynamic signals and auditory-evoked potentials (AEPs), extracted from EEG. Forty healthy volunteers (13 males, 27 females; mean age = 22.27 ± 3.96 years) listened to complex tones of varying intensities (50-, 70-, and 90-dB SPL) across seven frequencies (range of 400-2750 Hz) in blocks of five, while EEG and fNIRS were recorded. PERMANOVA analysis revealed that increasing intensity modulated hemodynamic activity, leading to amplitude changes and enhanced recruitment of auditory and prefrontal cortices. To isolate stimulus-specific activity, Spearman correlations were computed on residuals-components of AEPs and fNIRS responses with individual trends removed. The N1 amplitude increase was correlated with higher superior temporal gyrus (STG) and superior frontal gyrus (SFG) activity, and reduced activity in inferior frontal gyrus (IFG) for the oxygenated hemoglobin (HbO), while the deoxygenated hemoglobin (HbR) was associated with increased activity in one channel near the Supramarginal Gyrus (SMG). P2 amplitude increase was associated with higher activation in SFG and IFG for HbO, while for HbR with the activity in SMG, angular gyrus (AnG), SFG, and IFG. Additionally, internal correlations between fNIRS channels revealed strong associations within auditory and frontal regions. These findings provide insights into existing models of neurovascular coupling by showing how stimulus properties, such as intensity, modulate the relationship between neural activity and vascular responses.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11571-025-10281-7.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"88"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12149058/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144265519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Neural stem cell (NSC) possess the essential properties of pluripotency and self-renewal, making them promising candidates for the treatment of neurological disorders such as Alzheimer's disease (AD), Parkinson's disease (PD), and spinal cord injuries. While previous studies have identified the long non-coding RNAs (lncRNAs) Pnky as a regulator of NSC differentiation into neurons via RNA splicing, its role in NSC differentiation and proliferation through the Wnt/β-catenin pathway remains unclear. In this study, we investigated the mechanism by which Pnky influences the Wnt/β-catenin pathway to promote NSC differentiation into neurons. Using cck8 assays, western blot analysis, and quantitative polymerase chain reaction (qPCR), we found that Pnky knockdown significantly enhanced NSC proliferation and promoted their differentiation into neurons. Additionally, Pnky knockdown resulted in the downregulation of the neural stem cell marker Nestin and upregulation of the neuronal marker β3-Tubulin, through activation of the β-catenin signaling pathway. Conversely, inhibiting the β-catenin pathway hindered both NSC differentiation and proliferation. These findings suggest that targeting the Pnky-mediated Wnt/β-catenin pathway may offer novel strategies for the treatment, diagnosis, and drug development of central nervous system diseases.
{"title":"Pnky Modulates Neural Stem Cell Proliferation and Differentiation Through Activation of Wnt/β-Catenin Signaling Pathway.","authors":"Haidong Wu, Jing Huang, Xiaojing Li, Yali Song, Xuxiang Chen, Yajie Guo","doi":"10.1080/15476278.2025.2519641","DOIUrl":"10.1080/15476278.2025.2519641","url":null,"abstract":"<p><p>Neural stem cell (NSC) possess the essential properties of pluripotency and self-renewal, making them promising candidates for the treatment of neurological disorders such as Alzheimer's disease (AD), Parkinson's disease (PD), and spinal cord injuries. While previous studies have identified the long non-coding RNAs (lncRNAs) Pnky as a regulator of NSC differentiation into neurons via RNA splicing, its role in NSC differentiation and proliferation through the Wnt/β-catenin pathway remains unclear. In this study, we investigated the mechanism by which Pnky influences the Wnt/β-catenin pathway to promote NSC differentiation into neurons. Using cck8 assays, western blot analysis, and quantitative polymerase chain reaction (qPCR), we found that Pnky knockdown significantly enhanced NSC proliferation and promoted their differentiation into neurons. Additionally, Pnky knockdown resulted in the downregulation of the neural stem cell marker Nestin and upregulation of the neuronal marker β3-Tubulin, through activation of the β-catenin signaling pathway. Conversely, inhibiting the β-catenin pathway hindered both NSC differentiation and proliferation. These findings suggest that targeting the Pnky-mediated Wnt/β-catenin pathway may offer novel strategies for the treatment, diagnosis, and drug development of central nervous system diseases.</p>","PeriodicalId":19596,"journal":{"name":"Organogenesis","volume":"21 1","pages":"2519641"},"PeriodicalIF":1.6,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12184132/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144310262","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-06-26DOI: 10.1080/15476278.2025.2519607
Zhenggang Wu, Jing Liu, Deju Yin, Jing Huang, Yujing Huang, Pengfei Wang
Background: Epilepsy is a common disease of the nervous system. Recent advances in epigenetics have revealed DNA methylation as a key mechanism in epilepsy pathogenesis, particularly through dysregulation of GABAergic signaling. Baicalein has been shown to have anticonvulsant and neuroprotective effects. However, its epigenetic regulatory effects on GABA receptor function remain unexplored.
Methods: The status epilepticus (SE) model was induced by lithium chloride-pilocarpine (LiCl-PILO) in Sprague-Dawley (SD) rats. The rats were divided into control group, epileptic SE group and baicalein intervention group. Morris water maze (MWM) test, Nissl staining, immunofluorescence and enzyme-linked immunosorbent assay (ELISA) were used to detect cognitive functions and neuronal damage. Online sites, chromatin immunoprecipitation (ChIP) and western blotting were used to identify DNA methyltransferase 1 (DNMT1)-mediated methylation of gamma-aminobutyric acid type A receptor subunit delta (GABRD) promoter region.
Results: Baicalein treatment significantly prolonged the latency of SE onset and seizure onset, and improved the development of epilepsy. Meanwhile, baicalein improved the cognitive impairment in rats induced by LiCl-PILO. After treatment with baicalein, a sustained elevation in the number of neurons and NeuN levels was observed, along with a decrease in the contents of tumor necrosis factor -alpha (TNF-α), interleukin-1β (IL-1β), and ionized calcium-binding adapter molecule 1 (Iba-1) in the hippocampus. Mechanistically, baicalein interacted with DNMT1 to suppress GABRD promoter region methylation, thus increasing GABRD protein level in the hippocampus of rats induced by LiCl-PILO.
Conclusion: This study identifies DNMT1/GABRD axis as a novel epigenetic target for epilepsy intervention. Baicalein's ability to enhance tonic inhibition through demethylation of GABRD provides a groundbreaking strategy for drug-resistant epilepsy.
{"title":"Baicalein Alleviates Lithium-Pilocarpine-Induced Status Epilepticus by Regulating DNMT1/GABRD Pathway in Rats.","authors":"Zhenggang Wu, Jing Liu, Deju Yin, Jing Huang, Yujing Huang, Pengfei Wang","doi":"10.1080/15476278.2025.2519607","DOIUrl":"10.1080/15476278.2025.2519607","url":null,"abstract":"<p><strong>Background: </strong>Epilepsy is a common disease of the nervous system. Recent advances in epigenetics have revealed DNA methylation as a key mechanism in epilepsy pathogenesis, particularly through dysregulation of GABAergic signaling. Baicalein has been shown to have anticonvulsant and neuroprotective effects. However, its epigenetic regulatory effects on GABA receptor function remain unexplored.</p><p><strong>Methods: </strong>The status epilepticus (SE) model was induced by lithium chloride-pilocarpine (LiCl-PILO) in Sprague-Dawley (SD) rats. The rats were divided into control group, epileptic SE group and baicalein intervention group. Morris water maze (MWM) test, Nissl staining, immunofluorescence and enzyme-linked immunosorbent assay (ELISA) were used to detect cognitive functions and neuronal damage. Online sites, chromatin immunoprecipitation (ChIP) and western blotting were used to identify DNA methyltransferase 1 (DNMT1)-mediated methylation of gamma-aminobutyric acid type A receptor subunit delta (GABRD) promoter region.</p><p><strong>Results: </strong>Baicalein treatment significantly prolonged the latency of SE onset and seizure onset, and improved the development of epilepsy. Meanwhile, baicalein improved the cognitive impairment in rats induced by LiCl-PILO. After treatment with baicalein, a sustained elevation in the number of neurons and NeuN levels was observed, along with a decrease in the contents of tumor necrosis factor -alpha (TNF-α), interleukin-1β (IL-1β), and ionized calcium-binding adapter molecule 1 (Iba-1) in the hippocampus. Mechanistically, baicalein interacted with DNMT1 to suppress GABRD promoter region methylation, thus increasing GABRD protein level in the hippocampus of rats induced by LiCl-PILO.</p><p><strong>Conclusion: </strong>This study identifies DNMT1/GABRD axis as a novel epigenetic target for epilepsy intervention. Baicalein's ability to enhance tonic inhibition through demethylation of GABRD provides a groundbreaking strategy for drug-resistant epilepsy.</p>","PeriodicalId":19596,"journal":{"name":"Organogenesis","volume":"21 1","pages":"2519607"},"PeriodicalIF":1.6,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12203850/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144497584","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2024-12-31DOI: 10.1007/s11571-024-10189-8
Michela Balconi, Roberta A Allegretta, Laura Angioletti
The metacognition of one's planning strategy constitutes a "second-level" of metacognition that goes beyond the knowledge and monitoring of one's cognition and refers to the ability to use awareness mechanisms to regulate execution of present or future actions effectively. This study investigated the relation between metacognition of one's planning strategy and the behavioral and electrophysiological (EEG) correlates that support strategic planning abilities during performance in a complex decision-making task. Moreover, a possible link between task execution, metacognition, and individual differences (i.e., personality profiles and decision-making styles) was explored. A modified version of the Tower of Hanoi task was proposed to a sample of healthy participants, while their behavioral and EEG neurofunctional correlates of strategic planning were collected throughout the task with decisional valence. After the task, a metacognitive scale, the 10-item Big Five Inventory, the General Decision-Making Style inventory, and the Maximization Scale were administered. Results showed that the metacognitive scale enables to differentiate between the specific dimensions and levels of metacognition that are related to strategic planning behavioral performance and decision. Higher EEG delta power over left frontal cortex (AF7) during task execution positively correlates with the metacognition of one's planning strategy for the whole sample. While increased beta activity over the left frontal cortex (AF7) during task execution, higher metacognitive beliefs of efficacy and less willingness to change their strategy a posteriori were correlated with specific personality profiles and decision-making styles. These findings allow researchers to delve deeper into the multiple facets of metacognition of one's planning strategy in decision-making.
{"title":"Metacognition of one's strategic planning in decision-making: the contribution of EEG correlates and individual differences.","authors":"Michela Balconi, Roberta A Allegretta, Laura Angioletti","doi":"10.1007/s11571-024-10189-8","DOIUrl":"10.1007/s11571-024-10189-8","url":null,"abstract":"<p><p>The metacognition of one's planning strategy constitutes a \"second-level\" of metacognition that goes beyond the knowledge and monitoring of one's cognition and refers to the ability to use awareness mechanisms to regulate execution of present or future actions effectively. This study investigated the relation between metacognition of one's planning strategy and the behavioral and electrophysiological (EEG) correlates that support strategic planning abilities during performance in a complex decision-making task. Moreover, a possible link between task execution, metacognition, and individual differences (i.e., personality profiles and decision-making styles) was explored. A modified version of the Tower of Hanoi task was proposed to a sample of healthy participants, while their behavioral and EEG neurofunctional correlates of strategic planning were collected throughout the task with decisional valence. After the task, a metacognitive scale, the 10-item Big Five Inventory, the General Decision-Making Style inventory, and the Maximization Scale were administered. Results showed that the metacognitive scale enables to differentiate between the specific dimensions and levels of metacognition that are related to strategic planning behavioral performance and decision. Higher EEG delta power over left frontal cortex (AF7) during task execution positively correlates with the metacognition of one's planning strategy for the whole sample. While increased beta activity over the left frontal cortex (AF7) during task execution, higher metacognitive beliefs of efficacy and less willingness to change their strategy a posteriori were correlated with specific personality profiles and decision-making styles. These findings allow researchers to delve deeper into the multiple facets of metacognition of one's planning strategy in decision-making.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"4"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11688265/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142920754","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-01-09DOI: 10.1007/s11571-024-10207-9
Qiang Li, Hanxuan Wang, Rui Zhang
Insomnia, as a common sleep disorder, is the most common complaints in medical practice affecting a large proportion of the population on a situational, recurrent or chronic basis. It has been demonstrated that, during wakefulness, patients with insomnia exhibit increased EEG power in theta, beta, and gamma band. However, the relevant mechanisms underlying such power changes are still lack of understanding. In this paper, by combining the neural computational model with the real EEG data, we focus on exploring what's behind the EEG power changes for insomniac. We first develop a modified Liley model, named FSR-Liley, by respectively considering the fast and slow synaptic responses in inhibitory neurons along with the one-way projection between them. Then we introduce a parameter selection and evaluation method based on Markov chain Monte Carlo algorithm and Wasserstein distance, by which the sensitive parameters are selected automatically, and meanwhile, the optimal values of selected parameters are evaluated. Finally, through combining with EEG data, we determine the sensitive parameters in FSR-Liley and accordingly provide the mechanistic hypotheses: (1) decrease in , corresponding to the input from the thalamus to cortical inhibitory population with fast synaptic response, leads to the increased theta and beta power; (2) decrease in , corresponding to the projection from cortical excitatory population to inhibitory population with fast synaptic response, causes the increased gamma power. The results in this paper provide insights into the mechanisms of EEG power changes in insomnia and establish a theoretical foundation to support further experimental research.
失眠作为一种常见的睡眠障碍,是医疗实践中最常见的主诉,影响了很大一部分人口的情境性、复发性或慢性基础。研究表明,在清醒状态下,失眠患者在θ、β和γ波段的脑电图功率增加。然而,这种权力变化的相关机制仍然缺乏认识。本文将神经计算模型与实际脑电数据相结合,重点探讨失眠症患者脑电功率变化背后的原因。我们首先分别考虑抑制神经元的快速和慢速突触反应以及它们之间的单向投射,建立了一个改进的Liley模型,命名为FSR-Liley。在此基础上,提出了一种基于马尔可夫链蒙特卡罗算法和Wasserstein距离的参数选择与评价方法,自动选择敏感参数,并对所选参数的最优值进行评价。最后,结合脑电数据,确定FSR-Liley的敏感参数,并提出相应的机制假设:(1)丘脑对突触反应快的皮层抑制性群体的输入导致P e i f降低,导致θ和β功率增加;(2)与皮层兴奋性群体向突触快速反应的抑制性群体的投射相对应的N - e - i - f的减少导致了伽马功率的增加。本研究结果对失眠症脑电功率变化的机制提供了新的认识,为进一步的实验研究奠定了理论基础。
{"title":"Mechanisms underlying EEG power changes during wakefulness in insomnia patients: a model-driven study.","authors":"Qiang Li, Hanxuan Wang, Rui Zhang","doi":"10.1007/s11571-024-10207-9","DOIUrl":"10.1007/s11571-024-10207-9","url":null,"abstract":"<p><p>Insomnia, as a common sleep disorder, is the most common complaints in medical practice affecting a large proportion of the population on a situational, recurrent or chronic basis. It has been demonstrated that, during wakefulness, patients with insomnia exhibit increased EEG power in theta, beta, and gamma band. However, the relevant mechanisms underlying such power changes are still lack of understanding. In this paper, by combining the neural computational model with the real EEG data, we focus on exploring what's behind the EEG power changes for insomniac. We first develop a modified Liley model, named FSR-Liley, by respectively considering the fast and slow synaptic responses in inhibitory neurons along with the one-way projection between them. Then we introduce a parameter selection and evaluation method based on Markov chain Monte Carlo algorithm and Wasserstein distance, by which the sensitive parameters are selected automatically, and meanwhile, the optimal values of selected parameters are evaluated. Finally, through combining with EEG data, we determine the sensitive parameters in FSR-Liley and accordingly provide the mechanistic hypotheses: (1) decrease in <math><msub><mi>P</mi> <mrow><mi>e</mi> <msub><mi>i</mi> <mi>f</mi></msub> </mrow> </msub> </math> , corresponding to the input from the thalamus to cortical inhibitory population with fast synaptic response, leads to the increased theta and beta power; (2) decrease in <math><msub><mi>N</mi> <mrow><mi>e</mi> <msub><mi>i</mi> <mi>f</mi></msub> </mrow> </msub> </math> , corresponding to the projection from cortical excitatory population to inhibitory population with fast synaptic response, causes the increased gamma power. The results in this paper provide insights into the mechanisms of EEG power changes in insomnia and establish a theoretical foundation to support further experimental research.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"17"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11718038/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142969956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-02-10DOI: 10.1007/s11571-025-10226-0
Yue Mao, Ming Liu, Xiaojuan Sun
Granule cells (GCs) are mainly responsible for receiving and integrating information from the entorhinal cortex and transferring it to the hippocampus to accomplish memory-related functions such as pattern separation. Owing to the heterogeneity of GCs, there are also two other subtypes, namely semilunar granule cells (SGCs) and hilar ectopic granule cells (HEGCs). In order to investigate their differences, here we examine the disparities in dendritic integration among the different subtypes of GCs. By utilizing biological experimental data, we developed detailed multi-compartment models for each type of GC. Our findings reveal that under the excitatory synaptic inputs (mediated by AMPA receptors), the dendritic integration of GCs, SGCs and HEGCs are linear, sublinear, and supralinear respectively. Furthermore, we propose that the sublinear integration observed in SGCs may be attributed to a high density of V-type potassium channels (K ) distributed in dendrites with smaller volume and higher input resistance; while the supralinear integration seen in HEGCs may be due to a high density of T-type calcium channels (Ca ) distributed in dendrites with larger volume and lower input resistance. Additionally, sodium channels, six types of potassium channels (K , K , sK , fK , BK, SK), and two types of calcium channels (Ca , Ca ) have minimal influence on their respective integration modes. We also found different integration modes exhibit varied somatic firing rates when subjected to different spatial synaptic activation sets, the HEGCs with the supralinear integration demonstrate higher somatic firing rates than the SGCs with the sublinear integration. These results provide theoretical insights into understanding the distinct roles played by these three subtypes of granule cells in memory-related functions within the dentate gyrus.
Supplementary information: The online version contains supplementary material available at 10.1007/s11571-025-10226-0.
{"title":"Excitatory synaptic integration mechanism of three types of granule cells in the dentate gyrus.","authors":"Yue Mao, Ming Liu, Xiaojuan Sun","doi":"10.1007/s11571-025-10226-0","DOIUrl":"10.1007/s11571-025-10226-0","url":null,"abstract":"<p><p>Granule cells (GCs) are mainly responsible for receiving and integrating information from the entorhinal cortex and transferring it to the hippocampus to accomplish memory-related functions such as pattern separation. Owing to the heterogeneity of GCs, there are also two other subtypes, namely semilunar granule cells (SGCs) and hilar ectopic granule cells (HEGCs). In order to investigate their differences, here we examine the disparities in dendritic integration among the different subtypes of GCs. By utilizing biological experimental data, we developed detailed multi-compartment models for each type of GC. Our findings reveal that under the excitatory synaptic inputs (mediated by AMPA receptors), the dendritic integration of GCs, SGCs and HEGCs are linear, sublinear, and supralinear respectively. Furthermore, we propose that the sublinear integration observed in SGCs may be attributed to a high density of V-type potassium channels (K <math><mmultiscripts><mrow></mrow> <mtext>V</mtext> <mrow></mrow></mmultiscripts> </math> ) distributed in dendrites with smaller volume and higher input resistance; while the supralinear integration seen in HEGCs may be due to a high density of T-type calcium channels (Ca <math><mmultiscripts><mrow></mrow> <mtext>T</mtext> <mrow></mrow></mmultiscripts> </math> ) distributed in dendrites with larger volume and lower input resistance. Additionally, sodium channels, six types of potassium channels (K <math><mmultiscripts><mrow></mrow> <mtext>A</mtext> <mrow></mrow></mmultiscripts> </math> , K <math><mmultiscripts><mrow></mrow> <mtext>M</mtext> <mrow></mrow></mmultiscripts> </math> , sK <math><mmultiscripts><mrow></mrow> <mtext>DR</mtext> <mrow></mrow></mmultiscripts> </math> , fK <math><mmultiscripts><mrow></mrow> <mtext>DR</mtext> <mrow></mrow></mmultiscripts> </math> , BK, SK), and two types of calcium channels (Ca <math><mmultiscripts><mrow></mrow> <mtext>N</mtext> <mrow></mrow></mmultiscripts> </math> , Ca <math><mmultiscripts><mrow></mrow> <mtext>L</mtext> <mrow></mrow></mmultiscripts> </math> ) have minimal influence on their respective integration modes. We also found different integration modes exhibit varied somatic firing rates when subjected to different spatial synaptic activation sets, the HEGCs with the supralinear integration demonstrate higher somatic firing rates than the SGCs with the sublinear integration. These results provide theoretical insights into understanding the distinct roles played by these three subtypes of granule cells in memory-related functions within the dentate gyrus.</p><p><strong>Supplementary information: </strong>The online version contains supplementary material available at 10.1007/s11571-025-10226-0.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"40"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11811379/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143406189","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-12-01Epub Date: 2025-03-26DOI: 10.1007/s11571-025-10236-y
Suyu Liu, Xiaohang Zhu, Weigang Sun
Parkinson's disease is the neurodegenerative disorder which involves both neurons and non-neurons, and whose symptoms are usually represented by the error index and synchronization index in the computational study. This paper combines with the classical basal ganglia-thalamic network model and tripartite synapse model to explore the internal effects of astrocytes on the Parkinson's disease. The model simulates the firing patterns of the Parkinsonian state and healthy state, verifies the feasibility of the neural-glial model. The results show that the rate of production for IP modulate the frequency and amplitude of slow inward current for subthalamic nucleus, globus pallidus externa and interna in two modes. Increasing the rate of production for IP of subthalamic nucleus and globus pallidus externa can decrease the error index and presumably alleviate the Parkinson's disease. Increasing the rate of production for IP of globus pallidus externa and adjusting the rate of production for IP of subthalamic nucleus can result in the desynchronization of network in a regular way. These obtained results emphasize the effect of neurons (especially subthalamic nucleus and globus pallidus externa), astrocytes and their interaction on the Parkinson's disease. It enriches the evidence of involvement of astrocyte in Parkinson's disease, and proposes some cognitive points to the alleviation of Parkinson's disease.
{"title":"Computational framework of neuronal-astrocytic network within the basal ganglia-thalamic circuits associated with Parkinson's disease.","authors":"Suyu Liu, Xiaohang Zhu, Weigang Sun","doi":"10.1007/s11571-025-10236-y","DOIUrl":"10.1007/s11571-025-10236-y","url":null,"abstract":"<p><p>Parkinson's disease is the neurodegenerative disorder which involves both neurons and non-neurons, and whose symptoms are usually represented by the error index and synchronization index in the computational study. This paper combines with the classical basal ganglia-thalamic network model and tripartite synapse model to explore the internal effects of astrocytes on the Parkinson's disease. The model simulates the firing patterns of the Parkinsonian state and healthy state, verifies the feasibility of the neural-glial model. The results show that the rate of production for IP <math><mmultiscripts><mrow></mrow> <mn>3</mn> <mrow></mrow></mmultiscripts> </math> modulate the frequency and amplitude of slow inward current for subthalamic nucleus, globus pallidus externa and interna in two modes. Increasing the rate of production for IP <math><mmultiscripts><mrow></mrow> <mn>3</mn> <mrow></mrow></mmultiscripts> </math> of subthalamic nucleus and globus pallidus externa can decrease the error index and presumably alleviate the Parkinson's disease. Increasing the rate of production for IP <math><mmultiscripts><mrow></mrow> <mn>3</mn> <mrow></mrow></mmultiscripts> </math> of globus pallidus externa and adjusting the rate of production for IP <math><mmultiscripts><mrow></mrow> <mn>3</mn> <mrow></mrow></mmultiscripts> </math> of subthalamic nucleus can result in the desynchronization of network in a regular way. These obtained results emphasize the effect of neurons (especially subthalamic nucleus and globus pallidus externa), astrocytes and their interaction on the Parkinson's disease. It enriches the evidence of involvement of astrocyte in Parkinson's disease, and proposes some cognitive points to the alleviation of Parkinson's disease.</p>","PeriodicalId":10500,"journal":{"name":"Cognitive Neurodynamics","volume":"19 1","pages":"55"},"PeriodicalIF":3.1,"publicationDate":"2025-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11947385/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143751192","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}