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SimilarnActive Sites and Mechanisms Do Not Lead to Cross-Promiscuity in OrganophosphatenHydrolysis: Implications for Biotherapeutic Engineering 相似的无活性位点和机制不会导致有机磷酸酯水解的交叉混杂:对生物治疗工程的影响
Pub Date : 2017-11-21 DOI: 10.1021/jacs.7b09384.s001
Miha Purg (1316844), Mikael Elias (128712), Shina Caroline Lynn Kamerlin (686551)
Organophosphate hydrolases are proficientncatalysts of the breakdown of neurotoxic organophosphates and havengreat potential as both biotherapeutics for treating acute organophosphatentoxicity and as bioremediation agents. However, proficient organophosphatasesnsuch as serum paraoxonase 1 (PON1) and the organophosphate-hydrolyzingnlactonase <i>Sso</i>Pox are unable to hydrolyze bulkyorganophosphatesnwith challenging leaving groups such as diisopropyl fluorophosphaten(DFP) or venomous agent X, creating a major challenge for enzyme design.nCuriously, despite their mutually exclusive substrate specificities,nPON1 and diisopropyl fluorophosphatase (DFPase) have essentially identicalnactive sites and tertiary structures. In the present work, we usenempirical valence bond simulations to probe the catalytic mechanismnof DFPase as well as temperature, pH, and mutational effects, demonstratingnthat DFPase and PON1 also likely utilize identical catalytic mechanismsnto hydrolyze their respective substrates. However, detailed examinationnof both static structures and dynamical simulations demonstrates subtlenbut significant differences in the electrostatic properties and solventnpenetration of the two active sites and, most critically, the rolenof residues that make no direct contact with either substrate in actingnas “specificity switches” between the two enzymes. Specifically,nwe demonstrate that key residues that are structurally and functionallyncritical for the paraoxonase activity of PON1 prevent it from beingnable to hydrolyze DFP with its fluoride leaving group. These insightsnexpand our understanding of the drivers of the evolution of divergentnsubstrate specificity in enzymes with identical active sites and guidenthe future design of organophosphate hydrolases that hydrolyze compoundsnwith challenging leaving groups.
有机磷水解酶是神经毒性有机磷分解的高效催化剂,作为急性有机磷毒性的生物治疗药物和生物修复剂具有巨大的潜力。然而,熟练的有机磷酸酶,如血清对氧磷酶1 (PON1)和有机磷酸酶内酯酶,不能水解体积较大的有机磷酸酶n,具有挑战性的离开基团,如氟磷酸二异丙基(DFP)或有毒剂X,这给酶的设计带来了重大挑战。奇怪的是,尽管nPON1和二异丙基氟磷酸酶(DFPase)的底物特异性相互排斥,但它们具有基本相同的无活性位点和三级结构。在目前的工作中,我们使用经验价键模拟来探索DFPase的催化机制以及温度,pH和突变效应,证明DFPase和PON1也可能使用相同的催化机制来水解各自的底物。然而,对静态结构和动态模拟的详细研究表明,两种活性位点在静电特性和溶剂渗透方面存在细微但显著的差异,最关键的是,与任何一种底物都没有直接接触的残基在两种酶之间起着“特异性开关”的作用。具体来说,我们证明了在结构和功能上对PON1对氧磷酶活性至关重要的关键残基阻止了PON1水解含氟离开基的DFP。这些见解扩大了我们对具有相同活性位点的酶的不同底物特异性进化的驱动因素的理解,并指导未来设计水解具有挑战性离开基团的化合物的有机磷酸盐水解酶。
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