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Ti(IV) Asymmetric Acetyl-Substituted Phenolato Hexacoordinate Complexes as Anticancer Chemotherapy of Enhanced Bioavailability 不对称乙酰取代苯酚六配位配合物作为提高生物利用度的抗癌化疗药物。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-08 DOI: 10.1002/cmdc.70519
Mohammad Taha, Anwesh Pandey, Avital Shurki, Edit Y. Tshuva

A series of four titanium(IV) complexes based on asymmetric diaminobis(phenolato)-bis(alkoxo) ligands with different substitutions and acetyl functional groups was synthesized and characterized. All complexes were analyzed by 1H NMR,13C NMR, and HRMS. Three complexes were analyzed by X-ray crystallography; interestingly, whereas two complexes were similar to previously published structures showing C1 asymmetrical mononuclear octahedral coordination sphere, one structure of a bulky iodinated complex indicated formation of a unique pseudo-C2 symmetrical hepta-coordinated dimer, where computational studies indicated mostly subtle solvent and temperature effects. High hydrolytic stability was recorded for all derivatives, with t½ of more than 3 days for hydrolysis in 10% D2O organic solutions, with enhanced solubility in PBS/DMSO (up to 0.25 mg/mL in <0.5% DMSO aqueous solution). All complexes were highly cytotoxic toward human ovarian A2780 and colon HT-29 cancer cell lines (IC50 values in the range of 0.5–10 µM). Cellular uptake studies showed that the studied complexes possess marked membrane permeability, pointing to high potential as anticancer therapeutics.

合成了四种具有不同取代基和乙酰官能团的不对称二氨基双烷氧基配合物。所有配合物均经1H NMR、13C NMR和HRMS分析。用x射线晶体学分析了三种配合物;有趣的是,虽然两个配合物与先前发表的结构相似,显示出C1不对称单核八面体配位球,但一个大体积碘化配合物的结构表明形成了独特的伪c2对称七体配位二聚体,其中计算研究表明大多数是微妙的溶剂和温度效应。所有衍生物的水解稳定性都很高,在10% D2O有机溶液中水解时间超过3天,在PBS/DMSO中的溶解度增强(在0.5-10µM范围内的50个值中高达0.25 mg/mL)。细胞摄取研究表明,所研究的复合物具有显著的膜通透性,具有很高的抗癌治疗潜力。
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引用次数: 0
pH-Responsive Covalent Organic Framework-based Nanocarrier for Targeted Delivery of Cancer Therapeutics ph响应共价有机框架纳米载体靶向递送癌症治疗药物。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-08 DOI: 10.1002/cmdc.70527
Sukanya Bhunia, Kaivalya A. Deo, Manish K. Jaiswal

Covalent organic frameworks (COFs) are an emerging class of porous organic polymers with a broad spectrum of possible applications because of their large void spaces and modular pores. Despite excellent cytocompatibility, porosity, and biodegradability of COFs, their practical implementations in nanomedicine have been limited due to low water dispersibility and poor processability into nanodimensions. There are limited reports on nanoscale covalent organic frameworks, which can exhibit excellent drug loading capacity and pH-responsive drug release. Herein, a water-dispersible 2D COF-based nanocarrier is reported for pH-responsive targeted delivery of therapeutics (doxorubicin) to cancer cells. Particularly, a hydrolytically susceptible boronate ester-based covalent organic framework (COF-5) is supramolecularly stabilized with an amphiphilic polymer, Pluronic F127 (PLU), to obtain COF-PLU nanoparticles with a size of ~185 nm and a thickness of ~25 nm. A high doxorubicin loading in the COF-based nanocarrier (>90% drug loading efficiency and ~35% drug loading capacity) and pH-responsive drug release are observed. Furthermore, the surface modification of Dox-loaded polymer-stabilized COF-5 with hyaluronic acid demonstrates selective delivery of doxorubicin to cancer cells. Our study demonstrates a facile strategy for developing a pH-responsive COF-based nanocarrier with excellent drug-loading capacity for targeted delivery of therapeutics to cancer cells.

共价有机框架(COFs)是一类新兴的多孔有机聚合物,由于其巨大的空隙和模块化的孔隙,具有广泛的应用前景。尽管COFs具有良好的细胞相容性、孔隙性和生物降解性,但由于其水分散性低和纳米加工能力差,其在纳米医学中的实际应用受到了限制。纳米级共价有机骨架具有优异的载药能力和ph响应性药物释放能力,目前对其的研究报道有限。本文报道了一种水分散的二维cof基纳米载体,用于ph响应性靶向递送治疗药物(阿霉素)到癌细胞。特别地,水解敏感的硼酸酯基共价有机框架(COF-5)与两亲性聚合物Pluronic F127 (PLU)进行超分子稳定,得到尺寸为~185 nm,厚度为~25 nm的COF-PLU纳米颗粒。在cof基纳米载体上观察到高的阿霉素负载率(约90%的载药率和约35%的载药量)和ph响应性药物释放。此外,用透明质酸修饰dox负载聚合物稳定的COF-5的表面表明,多柔比星可以选择性地递送到癌细胞。我们的研究展示了一种开发ph响应的基于cof的纳米载体的简单策略,该纳米载体具有出色的药物装载能力,可以靶向递送治疗药物到癌细胞。
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引用次数: 0
Synthesis, Antiparasitic Activity, and ADME Profile of Morpholinephenylbenzamides: A Pharmacological Study Against Chagas Disease and Visceral Leishmaniasis Morpholinephenylbenzamides的合成、抗寄生虫活性和ADME谱:恰加斯病和内脏利什曼病的药理研究。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-08 DOI: 10.1002/cmdc.70518
Danilo Nascimento Farago, Daniela de Melo Resende, Mariza Gabriela Faleiro de Moura Lodi Cruz, Rafaela Marçal Sousa, Rafael Consolin Chelucci, Simone Michelan-Duarte, Felipe da Silva Mendonça de Melo, Douglas Davison da Silva Oliveira, Paula Derksen Macruz, Alexandra Maria dos Santos Carvalho, Eduardo Jorge Pilau, Izabela Marques Dourado Bastos, Adriano D. Andricopulo, Leonardo L. G. Ferreira, Silvane Maria Fonseca Murta, Celso de Oliveira Rezende Júnior

Chagas disease and leishmaniasis are neglected tropical diseases with limited treatment options. This study reports a hit-to-lead optimization of morpholinephenylbenzamides, starting from hit 1, which showed potent activity against Trypanosoma cruzi (IC50 0.29–0.76 μM) and Leishmania infantum (IC50 10.7 μM), despite a suboptimal ADME profile. A structure–activity relationship study of twenty-four novel derivatives provided key pharmacophoric insights. While Trypanosoma cruzi was less susceptible to chemical modifications, compound 20 exhibited potency comparable to benznidazole (IC50 3.58 μM) with significantly improved selectivity, lipophilicity, and solubility relative to compound 1. Against Leishmania infantum, six derivatives maintained activity, with compound 24 showing a 1.5-fold potency increase IC50 7.6 μM). Additionally, compound 16 stood out for its superior ADME profile, including enhanced permeability and metabolic stability. These findings validate the morpholinephenylbenzamide scaffold as a robust class with dual antiparasitic activity.

恰加斯病和利什曼病是被忽视的热带病,治疗选择有限。本研究报道了从hit 1开始的morpholinephenylbenzamides的hit- lead优化,尽管ADME不理想,但对克氏锥虫(IC50为0.29-0.76 μM)和婴儿利什曼原虫(IC50为10.7 μM)具有较强的活性。24种新型衍生物的构效关系研究提供了关键的药理见解。虽然克氏锥虫对化学修饰的敏感性较低,但化合物20的效价与苯并硝唑相当(IC50为3.58 μM),相对于化合物1具有显著提高的选择性、亲脂性和溶解度。6个衍生物对婴儿利什曼原虫仍有活性,其中化合物24的效价提高1.5倍,IC50为7.6 μM)。此外,化合物16因其优越的ADME特性而脱颖而出,包括增强的渗透性和代谢稳定性。这些发现证实了morpholinephenylbenzamide支架是一类具有双重抗寄生虫活性的坚固类。
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引用次数: 0
Scaffold Hopping Provides Liver X Receptor Agonist With Preference for the β Subtype 支架跳跃提供肝脏X受体激动剂对β亚型的偏好。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-07 DOI: 10.1002/cmdc.70509
Annette Kärcher, Fiona L. Motel, Felix F. Lillich, Astrid Kaiser, Ewgenij Proschak, Pascal Heitel

The liver X receptor is a promising target for diseases with dysregulated cholesterol levels. In addition to enhanced reverse cholesterol transport, however, LXR activation induces hepatic lipogenesis. Since the subtype LXRα is dominant in the liver, one strategy to overcome this is the development of LXRβ-selective agonists. We optimized the reported compound 2 with efficacy-based preference for LXRβ by scaffold hopping to enhance potency and selectivity. Among the four different scaffolds, which were obtained from computer-assisted design and subsequent synthesis, compound 7 emerged as the most promising scaffold. The spiro[indan-1,4′-piperidine] scaffold of 7 demonstrated superior pharmacokinetic and pharmacodynamic properties, warranting its further investigation towards a pharmacological tool compound.

肝脏X受体是治疗胆固醇水平失调疾病的一个有希望的靶点。然而,除了增强胆固醇逆向转运,LXR激活还诱导肝脏脂肪生成。由于LXRα亚型在肝脏中占主导地位,克服这一问题的一种策略是开发lxr β选择性激动剂。我们对报道的化合物2进行了优化,以LXRβ为基础,通过支架跳跃来提高效价和选择性。在计算机辅助设计和后续合成的四种不同的支架中,化合物7是最有前途的支架。螺旋[印度-1,4'-哌啶]支架7表现出优异的药代动力学和药效学特性,值得进一步研究其作为药理工具化合物。
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引用次数: 0
Polarity-Driven Scaffold Optimization of Diaryl Ether FabV Inhibitors to Enhance Aqueous Solubility 极性驱动支架优化二芳基醚FabV抑制剂提高水溶性。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-07 DOI: 10.1002/cmdc.70512
Radu-George Bulai, Martina Parolini, Kara Anne Cummins, Sam Purnal, Eveline Lescrinier, Jef Rozenski, Joleen Masschelein, Peter Verwilst

The continuous rise and spread of antimicrobial resistance poses a severe threat to global health and creates an urgent need for the development of new classes of antibiotics. One promising target is FabV, an enoyl-acyl carrier protein reductase that is crucial for the survival of certain pathogenic Gram-negative species such as the opportunistic nosocomial bacterium P. aeruginosa. Previously, our group investigated the structure–activity relationship of diaryl ether-based inhibitors of FabV and uncovered p-N,N-dimethylsulfamoyl phenyl substitution as a privileged motif, exemplified by compounds 1a (IC50 = 0.25 μM) and 1e (IC50 = 0.19 μM). In the present study, we explored skeletal modifications of the diaryl ether scaffold with the aim of improving aqueous solubility of the compounds while maintaining potent activity. Our efforts uncovered compound 6k (IC50 = 0.53 μM), in which the alkyl chain is replaced by a 3-cyanocyclobutyl group and which shows a fivefold increase in kinetic solubility compared to the parent compound 1a. Similarly, benzene-to-pyridine replacement in the A-ring led to significant solubility gains with minimal loss of potency. These results showcase an effective strategy for optimizing solubility in inhibitors targeting enzymes with highly lipophilic natural substrates.

抗菌素耐药性的持续上升和蔓延对全球健康构成严重威胁,迫切需要开发新型抗生素。一个有希望的靶标是FabV,一种烯酰酰基载体蛋白还原酶,它对某些致病性革兰氏阴性菌(如机会性医院细菌P. aeruginosa)的存活至关重要。在此之前,我们的团队研究了基于二芳基醚的FabV抑制剂的结构-活性关系,发现了p-N, n -二甲基磺胺基苯基取代是一个特权基序,例如化合物1a (IC50 = 0.25 μM)和1e (IC50 = 0.19 μM)。在本研究中,我们探索了二芳基醚支架的骨架修饰,目的是改善化合物的水溶性,同时保持有效的活性。我们发现了化合物6k (IC50 = 0.53 μM),其中的烷基链被3-氰环丁基取代,与母体化合物1a相比,其动力学溶解度增加了5倍。类似地,在a环中苯到吡啶的取代导致显著的溶解度增加,而效力的损失最小。这些结果展示了一种有效的策略来优化抑制剂的溶解度,靶向酶具有高度亲脂性的天然底物。
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引用次数: 0
Triflic Acid-Mediated Synthesis of 2-Sulfonamido Substituted 4H-Chromenes From para-Quinone Methides and Their Antiplasmodial Activity 三羧酸介导对醌类化合物合成2-磺胺取代的4h -铬及其抗疟原虫活性。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-05 DOI: 10.1002/cmdc.70517
Farman M. Abbasi, Aritra Ghosh,  Siddhant, Ashan Manhas, Niti Kumar, Sanjay Batra

An expedited synthesis of 2-sulfonamido-substituted 4H-chromene derivatives via reaction between para-quinone methides and ynamides in the presence of triflic acid at room temperature is described. Most of the synthesized compounds displayed potent antiplasmodial activity against both the chloroquine-sensitive and -resistant strains of Plasmodium falciparum with a good selectivity index.

介绍了在三酸存在下,对醌类和酰胺类在室温下快速合成2-磺酰胺取代的4h -铬胺衍生物。大多数合成的化合物对氯喹敏感型和耐药型恶性疟原虫均表现出较强的抗疟原虫活性,并具有良好的选择性指数。
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引用次数: 0
Discovery and Characterization of Novel Piperidine Derivatives as Potent Cytochrome P450 17A1 Inhibitors for Prostate Cancer Therapy 新型哌啶衍生物作为前列腺癌治疗中有效的细胞色素P450 17A1抑制剂的发现和表征。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-04 DOI: 10.1002/cmdc.70336
Angelika Grudzińska, Jibira Yakubu, Chiara Vigato, Therina du Toit, Gaia Vanzetti, Radosław Zan, Donatella Boschi, Simonetta Oliaro-Bosso, Fredrik Björkling, Flemming Steen Jørgensen, Amit V. Pandey, Tomasz M. Wróbel

Castration-resistant prostate cancer relies on intratumoral androgen synthesis mediated by cytochrome P450 17A1 (CYP17A1). Treatment with the only clinically used CYP17A1 inhibitor, abiraterone, is limited by resistance and side effects, underscoring the urgent need for new CYP17A1 inhibitors with greater selectivity and improved safety profiles. In response to this challenge, we designed, synthesized, and biologically evaluated 30 novel piperidine derivatives. All compounds were initially screened in the H295R cell line to assess their inhibitory activity toward both CYP17A1 and off-target CYP21A2. Compounds were further evaluated in cell viability assays using prostate cancer cells and a normal prostate cell line. The most potent and selective compounds were subjected to further biological studies: IC50 determination, steroid profiling, cell migration assay, aldo–keto reductase family 1 member C3 inhibition assays, absorption, distribution, metabolism, and excretion prediction, and solubility testing. Several compounds emerged as the most active and selective leads, highlighting their potential for pharmaceutical development.

去势抵抗性前列腺癌依赖于细胞色素P450 17A1 (CYP17A1)介导的瘤内雄激素合成。临床唯一使用的CYP17A1抑制剂阿比特龙(abiraterone)的治疗受到耐药性和副作用的限制,这表明迫切需要具有更高选择性和更高安全性的新型CYP17A1抑制剂。为了应对这一挑战,我们设计、合成并对30种新的哌啶衍生物进行了生物学评价。所有化合物最初在H295R细胞系中筛选,以评估其对CYP17A1和脱靶CYP21A2的抑制活性。用前列腺癌细胞和正常前列腺细胞系进一步评价化合物的细胞活力。最有效和最具选择性的化合物进行了进一步的生物学研究:IC50测定、类固醇谱分析、细胞迁移试验、醛酮还原酶家族1成员C3抑制试验、吸收、分布、代谢和排泄预测以及溶解度测试。一些化合物作为最活跃和选择性的先导物出现,突出了它们在药物开发方面的潜力。
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引用次数: 0
Novel (Azolo)Pyrimidine Derivatives as Dual Modulators of NO and IL-6 in Murine Macrophages and Human Monocytes 新型(偶氮)嘧啶衍生物在小鼠巨噬细胞和人单核细胞中作为NO和IL-6的双重调节剂。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-04 DOI: 10.1002/cmdc.70485
Irina G. Ovchinnikova, Olga V. Fedorova, Nikolay A. Rasputin, Grigory A. Kim, Elena S. Filatova, Polina K. Titova, Denis A. Babkov, Elena V. Sokolova, Andrey V. Lukyanov, Roman D. Danilov, Gennady L. Rusinov, Alexander A. Spasov, Egor V. Verbitskiy, Valery N. Charushin

Small molecules that simultaneously suppress nitric oxide (NO) and interleukin‑6 (IL‑6) offer a strategy to alleviate pathological inflammation. Building on our previous work with aryl‑substituted azaheterocycles, we synthesized 33 new pyrimidine and azolopyrimidine derivatives bearing amino, amide, hydroxyl, or halide groups to enhance hydrogen‑bonding capacity and improve inhibitory activity against both mediators. Screening in C57BL/6J mouse peritoneal macrophages identified nine compounds that markedly inhibited NO production at 50 µM. Two leads—triazolo[1,5‑a]pyrimidine 12bc and dihydropyrimidine carboxamide 7a—emerged as potent dual inhibitors. Compound 7a showed IC50 values of 0.47 µM (NO) and 0.1 µM (IL‑6); 12bc gave 8.66 µM (NO) and 0.85 µM (IL‑6), both with acceptable cytotoxicity. In human PBMC‑derived monocytes, both compounds dose‑dependently suppressed LPS‑induced IL‑6 secretion; 12bc was slightly more potent, reducing IL‑6 to near‑baseline at 100 µM, comparable to dexamethasone. In an LPS/ATP pyroptosis model, they protected monocytes from inflammatory death, with 12bc nearly restoring normal cell morphology. Docking studies into mouse iNOS and IL‑6 suggested plausible binding modes and structure–activity relationships. These (azolo)pyrimidine scaffolds represent promising leads for safe, dual‑acting anti‑inflammatory agents.

同时抑制一氧化氮(NO)和白细胞介素- 6 (IL - 6)的小分子提供了一种减轻病理性炎症的策略。在我们之前对芳基取代的氮杂环的研究基础上,我们合成了33个新的嘧啶和偶氮嘧啶衍生物,这些衍生物含有氨基、酰胺、羟基或卤化物基团,以增强氢键能力并提高对这两种介质的抑制活性。在C57BL/6J小鼠腹膜巨噬细胞中筛选,发现9种化合物在50µM时显著抑制NO的产生。两种先导物-三唑[1,5 - a]嘧啶12bc和二氢嘧啶羧酰胺7a-被发现是有效的双重抑制剂。化合物7a的IC50值分别为0.47 µM (NO)和0.1µM (IL - 6);12bc给予8.66µM (NO)和0.85µM (IL - 6),均具有可接受的细胞毒性。在人PBMC来源的单核细胞中,两种化合物剂量依赖性地抑制LPS诱导的IL - 6分泌;12bc更有效,在100µM时将IL - 6降至接近基线水平,与地塞米松相当。在LPS/ATP焦亡模型中,它们保护单核细胞免受炎症性死亡,12bc几乎恢复了正常的细胞形态。小鼠iNOS和IL - 6的对接研究提出了合理的结合模式和结构-活性关系。这些(偶氮)嘧啶支架为安全的双作用抗炎剂提供了有希望的线索。
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引用次数: 0
Discrepancy in Reported and Observed Monoacylglycerol Lipase Inhibition of Aryl Formyl Piperidine Containing Potent and Highly Selective Monoacylglycerol Lipase Inhibitor 含有强效和高选择性单酰基甘油脂肪酶抑制剂的芳酰甲酰基哌啶对单酰基甘油脂肪酶抑制作用的报道和观察的差异。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-04 DOI: 10.1002/cmdc.70525
Juha R. Savinainen, Praveen Kumar Singh, Jari Yli-Kauhaluoma, Jayendra Z. Patel

Zhi et al. reported compound 36 as a potent reversible inhibitor of human recombinant monoacylglycerol lipase (hrMAGL; IC50 = 15 nM) with excellent selectivity over other targets. To develop potential PET tracers for imaging MAGL, we synthesized compound 36 as a reference compound. Surprisingly, we observed a significant discrepancy between the reported potency and our findings in two well-established in vitro assays. Compound 36 exhibited no inhibition of endocannabinoid hydrolysis in HEK293 lysates overexpressing human MAGL in a glycerol-based assay at 1 μM. In the competitive ABPP assay, it appeared completely inactive inhibiting MAGL in mouse whole-brain proteome even at 100 μM. In addition, eight structural analogs (2–9) of compound 36 also failed to show any significant MAGL inhibition. Interestingly, when the synthetic substrate 4-nitrophenyl acetate, also used by Zhi et al., was employed, compound 36 inhibited MAGL more effectively than in glycerol-based assay, with an IC50 value of 143 nM, being almost 10-fold less potent than reported. In our reversibility assay, compound 36 exhibited measurable MAGL inhibition only at a concentration of 100 μM. In summary, this study contradicts the earlier report and therefore, compound 36 should be used with caution as a research tool in studies exploring MAGL inhibition.

Zhi等人报道化合物36是一种有效的可逆的人重组单酰基甘油脂肪酶抑制剂(hrMAGL; IC50 = 15 nM),对其他靶标具有极好的选择性。为了开发潜在的PET示踪剂用于成像MAGL,我们合成了化合物36作为参考化合物。令人惊讶的是,我们在两个成熟的体外分析中观察到报道的效力和我们的发现之间存在显着差异。在1 μM的甘油基实验中,化合物36对过表达人MAGL的HEK293裂解物的内源性大麻素水解没有抑制作用。在竞争性ABPP实验中,即使在100 μM下,它对小鼠全脑蛋白质组的MAGL也表现为完全失活抑制。此外,化合物36的8个结构类似物(2-9)也没有表现出明显的MAGL抑制作用。有趣的是,当使用合成底物4-硝基苯乙酸酯(也由Zhi等人使用)时,化合物36比基于甘油的测定更有效地抑制MAGL, IC50值为143 nM,几乎比报道的效力低10倍。在我们的可逆性实验中,化合物36仅在浓度为100 μM时表现出可测量的MAGL抑制作用。综上所述,该研究与之前的报道相矛盾,因此,在探索MAGL抑制作用的研究中,应谨慎使用化合物36。
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引用次数: 0
Capturing Hu Antigen R Domain Closure Through Supervised Molecular Dynamics Simulations 通过监督分子动力学模拟捕获胡抗原R结构域闭合。
IF 3.5 4区 医学 Q2 CHEMISTRY, MEDICINAL Pub Date : 2026-10-04 DOI: 10.1002/cmdc.70523
Chiara Cavastracci Strascia, Andrea Dodaro, Gianluca Novello, Silvia Menin, Mattia Sturlese, Veronica Salmaso, Stefano Moro

Hu antigen R (HuR), an RNA-binding protein implicated in cancer, inflammation, and neurodegenerative disorders, represents a challenging target for drug discovery due to its large solvent-exposed RNA-binding interface and pronounced conformational flexibility. HuR contains tandem RNA recognition motifs (RRM1 and RRM2) that undergo substantial rearrangements between an apo open state and an RNA-bound closed conformation. Here, we investigated both states using molecular dynamics (MD) simulations. While the RNA-bound complex maintained a stable closed architecture, the apo form displayed extensive interdomain motions, highlighting the intrinsic flexibility of HuR. Because conventional MD simulations failed to capture the open-to-closed transition, we developed a novel application of Supervised MD (SuMD), previously employed for intermolecular recognition processes, to characterize HuR intramolecular domain closure. Using a multistep supervision protocol based on selected interdomain residue pairs, SuMD reproduced a closed conformation resembling the experimental RNA-bound structure and identified a plausible reclosure pathway. Per–residue interaction analyses revealed key contributions from the RRM1–RRM2 linker region, particularly Arg97, together with Arg136 and Arg147 of RRM2, consistent with mutagenesis data. These findings extend the applicability of SuMD to intramolecular conformational transitions, provide mechanistic insight into HuR domain closure, and offer a structural framework for identifying druggable conformational states for future HuR-targeted drug discovery.

胡抗原R (HuR)是一种与癌症、炎症和神经退行性疾病有关的rna结合蛋白,由于其暴露于溶剂的大rna结合界面和明显的构象灵活性,它代表了一个具有挑战性的药物发现靶点。HuR包含串联RNA识别基序(RRM1和RRM2),在载脂蛋白开放状态和RNA结合的封闭构象之间进行大量重排。在这里,我们使用分子动力学(MD)模拟来研究这两种状态。虽然rna结合复合物保持稳定的封闭结构,但载脂蛋白形式表现出广泛的结构域间运动,突出了HuR固有的灵活性。由于传统的MD模拟无法捕捉到从开放到封闭的转变,我们开发了一种新的应用监督MD (SuMD),以前用于分子间识别过程,来表征HuR分子内结构域的闭合。使用基于选择的结构域间残基对的多步骤监督协议,SuMD再现了类似于实验rna结合结构的封闭构象,并确定了一个合理的再闭合途径。每残基相互作用分析揭示了RRM1-RRM2连接区域的关键作用,特别是RRM2的Arg97,以及Arg136和Arg147,与突变数据一致。这些发现扩展了SuMD在分子内构象转变中的适用性,提供了对HuR结构域闭合的机制见解,并为未来发现HuR靶向药物提供了鉴定可药物构象状态的结构框架。
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