Plant Biotechnology Journal最新文献

The metabolome is highly diverse and the closest layer to phenotype; therefore, it is commonly regarded as a bridge between the genome and phenome in plants. Here, we performed large-scale metabolome analysis using liquid chromatography-tandem mass spectrometry (LC-MS/MS) and 33 grain-related traits in a diverse panel of natural accessions and a recombinant inbred line (RIL) population. We identified a new network of 2286 associations between 947 metabolites and 33 grain-related traits. Systematic integration of metabolic genome-wide association study (mGWAS) and metabolic quantitative trait locus (mQTL) analyses identified 33 566 significant single-nucleotide polymorphisms (SNPs) and 3128 mQTL. Thirteen annotated metabolites co-localized within a physical interval on 7A. Integration of metabolite-based and phenotype-based GWAS and QTL revealed an overlapped region for gibberellin A4 (GA4) content and grain roundness on 4A. Phenotyping of an ethyl methanesulfonate (EMS)-induced mutant confirmed the role of TaSDR in regulating GA4 content and grain morphology. These findings provide novel insights into the metabolic pathways influencing key grain-related traits and advance our understanding of the complex molecular mechanisms regulating grain metabolites and phenotypes in wheat. The identified metabolic markers and candidate genes provide valuable targets for molecular breeding programs aimed at improving wheat yield and quality.

Goji is recognized as a nutritionally rich superfruit with medicinal and industrial importance. However, its inherently indeterminate growth habit causes asynchronous flowering and uneven fruit ripening, resulting in harvesting inefficiency with high labour costs and low fruit yield. To elucidate the molecular basis of shoot determinacy and early flowering, comparative transcriptome analysis of indeterminate and determinate shoot apices in an F₁ hybrid population of Lycium barbarum identified 15 candidate genes associated with shoot growth termination and early flowering, including an SP-like gene (LbSP1, Lba0102749) and a goji homologue of SlSP5G (LbSP5G1, Lba0501086) from the phosphatidylethanolamine-binding protein (PEBP) family. CRISPR/Cas9-mediated knockout of LbSP1 and LbSP5G1 in black goji berry produced homozygous single (CRLbSP1, CRLbSP5G1) and double determinate (2gCR LbSP1 + LbSP5G1) lines exhibiting compact shoot architecture, reduced day-length sensitivity, terminal flowering, and improved fruit yield. The double determinate line showed a significantly reduced number of leaves to the first inflorescence (7.25) compared to wild-type (WT) (18.6), with fruit yield per plant of 174.94 g, followed by CRLbSP5G1 (64.55 g), CRLbSP1 (55.17 g), and WT (22.09 g). Transcriptomic and co-expression analysis revealed extensive reprogramming of flowering regulatory networks, with LbSP1 and LbSP5G1 functioning as central regulatory hubs. Protein-protein interaction assays further established functional divergence between the two genes within a PEBP-centred network governing meristem fate. These findings provide the first functional characterization of terminal flowering genes in goji, establishing a molecular framework for breeding compact, early-flowering, and high-yield cultivars optimized for mechanized harvesting.

Botrytis cinerea is a widespread plant pathogenic ascomycete that causes grey mould in over 1400 species and impacts global crop yields. Double-stranded RNA (dsRNA)-induced gene silencing is a promising technology for pest control, but efficient delivery remains a major challenge. This work presents a star polycation (SPc)-based nano-delivery platform that enhances dsRNA internalization and enables effective control of B. cinerea. SPc assembles with dsRNA via electrostatic interactions, hydrogen bonding and Van der Waals forces, forming stable nanoscale complexes. SPc facilitates dsRNA uptake into fungal mycelia by 2.19-fold, primarily via two activated routes: endocytosis and transmembrane transport, which increase vesicle and particle numbers by 3.74- and 1.87-fold, respectively. Six genes (pkc, ypt10, pil1, mfs1, mfs2 and mfs3) in these two routes play crucial roles in the delivery process. RNA interference, chemical inhibition and mutation experiments demonstrate that the two routes interact to optimize the cellular uptake of SPc-loaded dsRNA. Finally, a high-efficiency RNA fungicide is developed, comparable to commercial fungicide in protecting cucumber leaves and tomato fruits. This study reveals the synergistic mechanism of nanocarrier-mediated gene delivery and identifies key genes, supporting the design and application of RNA pesticides.