首页 > 最新文献
paperpass

Small Methods最新文献

英文 中文
Exploring Local Structure in Iron Oxide Nanoparticles During Chemical Vapor Synthesis by in Situ and Operando X-Ray Absorption Spectroscopy. 利用原位和Operando x射线吸收光谱研究化学气相合成过程中氧化铁纳米颗粒的局部结构。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-16 DOI: 10.1002/smtd.71129
Shradha R Joshi, Chengjun Sun, Markus Winterer

Early stages of nanoparticle (NP) formation in gas-phase synthesis processes, such as chemical vapor synthesis (CVS), involve (trans-)formations of molecular species (precursors), small clusters (nuclei), or amorphous intermediates before forming the final NP product. These transformations may be probed using in situ and operando X-ray absorption spectroscopy (XAS), enabling the observation of local structure evolution under CVS conditions. However, this is challenging due to the very dilute sample system, that is, NPs in the gas phase, coupled with high temperatures required for particle formation, deteriorating the signal-to-noise ratio. Here, we present an experimental setup specially tailored to overcome these challenges, enabling in situ and operando XAS measurements of sufficient quality to perform quantitative data analysis. The major focus is a comprehensive understanding of the formation of iron oxide NPs in CVS. Quantitative XANES analysis reveals controlled changes of oxidation states of iron under varying oxygen partial pressures, while EXAFS analysis using reverse Monte Carlo (RMC) simulations provides detailed insight into local structure around the iron atom probed as a function of process temperatures. The mean square displacements available from RMC analysis may be used to estimate the temperature of NPs in the gas phase or to determine their Debye temperatures.

在气相合成过程中,纳米颗粒(NP)形成的早期阶段,如化学蒸汽合成(CVS),在形成最终的NP产物之前,涉及分子物种(前体)、小簇(核)或无定形中间体的(反式)形成。这些转变可以用原位和操作原子x射线吸收光谱(XAS)来探测,从而可以观察到CVS条件下的局部结构演变。然而,由于样品系统非常稀,即气相的NPs,加上颗粒形成所需的高温,使信噪比恶化,这是具有挑战性的。在这里,我们提出了一个专门为克服这些挑战而定制的实验装置,使原位和操作的XAS测量具有足够的质量,可以进行定量数据分析。主要重点是全面了解氧化铁NPs在CVS中的形成。定量XANES分析揭示了不同氧分压下铁氧化态的受控变化,而使用反向蒙特卡罗(RMC)模拟的EXAFS分析提供了铁原子周围作为工艺温度函数的局部结构的详细信息。RMC分析的均方位移可用来估计NPs在气相中的温度或确定它们的德拜温度。
{"title":"Exploring Local Structure in Iron Oxide Nanoparticles During Chemical Vapor Synthesis by in Situ and Operando X-Ray Absorption Spectroscopy.","authors":"Shradha R Joshi, Chengjun Sun, Markus Winterer","doi":"10.1002/smtd.71129","DOIUrl":"https://doi.org/10.1002/smtd.71129","url":null,"abstract":"<p><p>Early stages of nanoparticle (NP) formation in gas-phase synthesis processes, such as chemical vapor synthesis (CVS), involve (trans-)formations of molecular species (precursors), small clusters (nuclei), or amorphous intermediates before forming the final NP product. These transformations may be probed using in situ and operando X-ray absorption spectroscopy (XAS), enabling the observation of local structure evolution under CVS conditions. However, this is challenging due to the very dilute sample system, that is, NPs in the gas phase, coupled with high temperatures required for particle formation, deteriorating the signal-to-noise ratio. Here, we present an experimental setup specially tailored to overcome these challenges, enabling in situ and operando XAS measurements of sufficient quality to perform quantitative data analysis. The major focus is a comprehensive understanding of the formation of iron oxide NPs in CVS. Quantitative XANES analysis reveals controlled changes of oxidation states of iron under varying oxygen partial pressures, while EXAFS analysis using reverse Monte Carlo (RMC) simulations provides detailed insight into local structure around the iron atom probed as a function of process temperatures. The mean square displacements available from RMC analysis may be used to estimate the temperature of NPs in the gas phase or to determine their Debye temperatures.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71129"},"PeriodicalIF":8.7,"publicationDate":"2026-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149190332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Three-in-One Spacer Strategy Toward Highly Alkali-Resistant Covalent Organic Frameworks for Efficient Oxygen Evolution Reaction in Alkaline Seawater. 用于碱性海水高效析氧反应的高耐碱共价有机框架三合一隔离策略
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-16 DOI: 10.1002/smtd.71138
Dongchuang Wu, Ziwen Yan, Boyu Lu, Ye Liu, Sihan Tao, Wenping Geng, Kun Jiang, Ning Gu

Molecular catalysts with well-defined active sites and structural tunability are proposed as promising electrocatalysts for alkaline oxygen evolution reaction (OER). However, poor alkaline resistance, low atomic utilization, limited mass transfer resulted in rapid activity degradation and unstable catalytic performance of molecular catalysts in alkaline environments. Herein, a three-in-one spacer strategy was designed to develop highly alkali-resistant phthalocyanine-based covalent organic frameworks (COFs) by integrating a spacer with hydrophilic groups and stable piperazine linkages in skeletons, which endows COF with high alkaline resistance, high atomic utilization and effective mass transfer. As a result, the COF shows a surprising activity with an ultra-low overpotential of 77 mV and a long-term durability of exceeding 290 h at 500 mA cm-2 in 6 M KOH and seawater at 80°C in an anion exchange membrane electrolyzer. To the best of our knowledge, the unprecedented stability and activity exceeds all organic catalysts. Theoretical and experimental studies reveal that the hydrophilic units not only increase the mass transfer, but also can facilitate the *OH deprotonation on the Co sites, which further improve the catalytic activity.

具有明确活性位点和结构可调性的分子催化剂被认为是碱析氧反应(OER)中很有前途的电催化剂。然而,由于分子催化剂耐碱性差、原子利用率低、传质有限,导致其活性降解快,在碱性环境中催化性能不稳定。本文设计了一种三位一体的间隔剂策略,通过在骨架中整合具有亲水性基团和稳定哌嗪键的间隔剂,开发出高耐碱酞菁基共价有机框架(COFs),使COFs具有高耐碱性、高原子利用率和有效的传质能力。结果表明,COF在阴离子交换膜电解槽中,在6m KOH和80°C海水中,在500 mA cm-2条件下,具有77 mV的超低过电位和超过290 h的长期耐久性。据我们所知,它的稳定性和活性超过了所有的有机催化剂。理论和实验研究表明,亲水单元不仅增加了传质,而且可以促进Co位上*OH的去质子化,从而进一步提高催化活性。
{"title":"Three-in-One Spacer Strategy Toward Highly Alkali-Resistant Covalent Organic Frameworks for Efficient Oxygen Evolution Reaction in Alkaline Seawater.","authors":"Dongchuang Wu, Ziwen Yan, Boyu Lu, Ye Liu, Sihan Tao, Wenping Geng, Kun Jiang, Ning Gu","doi":"10.1002/smtd.71138","DOIUrl":"https://doi.org/10.1002/smtd.71138","url":null,"abstract":"<p><p>Molecular catalysts with well-defined active sites and structural tunability are proposed as promising electrocatalysts for alkaline oxygen evolution reaction (OER). However, poor alkaline resistance, low atomic utilization, limited mass transfer resulted in rapid activity degradation and unstable catalytic performance of molecular catalysts in alkaline environments. Herein, a three-in-one spacer strategy was designed to develop highly alkali-resistant phthalocyanine-based covalent organic frameworks (COFs) by integrating a spacer with hydrophilic groups and stable piperazine linkages in skeletons, which endows COF with high alkaline resistance, high atomic utilization and effective mass transfer. As a result, the COF shows a surprising activity with an ultra-low overpotential of 77 mV and a long-term durability of exceeding 290 h at 500 mA cm<sup>-2</sup> in 6 M KOH and seawater at 80°C in an anion exchange membrane electrolyzer. To the best of our knowledge, the unprecedented stability and activity exceeds all organic catalysts. Theoretical and experimental studies reveal that the hydrophilic units not only increase the mass transfer, but also can facilitate the *OH deprotonation on the Co sites, which further improve the catalytic activity.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71138"},"PeriodicalIF":8.7,"publicationDate":"2026-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149190305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Interlayer-Engineered 1T-MoSe2 Enabling Reversible Mn2+/H+ Hybrid Storage for Aqueous Manganese Batteries. 层间工程的1T-MoSe2实现了水锰电池的可逆Mn2+/H+混合存储。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-15 DOI: 10.1002/smtd.71121
Hyeju Kwon, Hyeongseok Lee, Chung-Yul Yoo, Munseok S Chae

Aqueous manganese batteries are emerging as safe, low-cost options for large-scale energy storage but are limited by sluggish Mn2+ diffusion and poor reversibility. Here, we report an interlayer-engineered 1T-phase MoSe2 cathode enabling fast, reversible hybrid storage of Mn2+ and H+ ions. Controlled chemical exfoliation induces a metallic phase transition and expands the interlayer spacing, creating a favorable environment for multivalent ion transport. The exfoliated MoSe2 delivers 153.4 mAh g-1 at 0.1 A g-1 and retains 92.5% capacity after 1800 cycles. Kinetic analysis shows a reduced ion migration barrier compared with bulk MoSe2, highlighting the role of phase engineering and interlayer expansion. Spectroscopic and electrochemical analyses reveal a reversible Mn2+/H+ co-intercalation mechanism. A full cell paired with a Mn metal anode delivers 165.3 mAh g-1 and retains 89.9% of its capacity after 2000 cycles, demonstrating the practical feasibility of a rechargeable aqueous Mn-metal battery. This work establishes phase-engineered layered dichalcogenides as a platform for aqueous multivalent batteries and provides design principles to overcome kinetic limitations.

锰水电池是一种安全、低成本的大规模储能选择,但受Mn2+扩散缓慢和可逆性差的限制。在这里,我们报道了一种层间工程的1t相MoSe2阴极,使Mn2+和H+离子能够快速、可逆地混合存储。受控的化学剥离诱导金属相变,扩大层间间距,为多价离子传输创造有利的环境。去角质的MoSe2在0.1 A g-1下提供153.4 mAh g-1,在1800次循环后保持92.5%的容量。动力学分析表明,与大块MoSe2相比,离子迁移势垒降低,突出了相工程和层间膨胀的作用。光谱和电化学分析揭示了可逆的Mn2+/H+共插层机理。与锰金属阳极配对的完整电池提供165.3 mAh g-1,并在2000次循环后保持89.9%的容量,证明了可充电水性锰金属电池的实际可行性。这项工作建立了相工程层状二硫化物作为水多价电池的平台,并提供了克服动力学限制的设计原则。
{"title":"Interlayer-Engineered 1T-MoSe<sub>2</sub> Enabling Reversible Mn<sup>2+</sup>/H<sup>+</sup> Hybrid Storage for Aqueous Manganese Batteries.","authors":"Hyeju Kwon, Hyeongseok Lee, Chung-Yul Yoo, Munseok S Chae","doi":"10.1002/smtd.71121","DOIUrl":"https://doi.org/10.1002/smtd.71121","url":null,"abstract":"<p><p>Aqueous manganese batteries are emerging as safe, low-cost options for large-scale energy storage but are limited by sluggish Mn<sup>2+</sup> diffusion and poor reversibility. Here, we report an interlayer-engineered 1T-phase MoSe<sub>2</sub> cathode enabling fast, reversible hybrid storage of Mn<sup>2+</sup> and H<sup>+</sup> ions. Controlled chemical exfoliation induces a metallic phase transition and expands the interlayer spacing, creating a favorable environment for multivalent ion transport. The exfoliated MoSe<sub>2</sub> delivers 153.4 mAh g<sup>-1</sup> at 0.1 A g<sup>-1</sup> and retains 92.5% capacity after 1800 cycles. Kinetic analysis shows a reduced ion migration barrier compared with bulk MoSe<sub>2</sub>, highlighting the role of phase engineering and interlayer expansion. Spectroscopic and electrochemical analyses reveal a reversible Mn<sup>2+</sup>/H<sup>+</sup> co-intercalation mechanism. A full cell paired with a Mn metal anode delivers 165.3 mAh g<sup>-1</sup> and retains 89.9% of its capacity after 2000 cycles, demonstrating the practical feasibility of a rechargeable aqueous Mn-metal battery. This work establishes phase-engineered layered dichalcogenides as a platform for aqueous multivalent batteries and provides design principles to overcome kinetic limitations.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71121"},"PeriodicalIF":8.7,"publicationDate":"2026-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149190367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
3D-Nanostructured ITO Enables High-Loading Prussian Blue Cathodes for Zn-Based Electrochromic Smart Windows. 3d纳米结构ITO使高负载普鲁士蓝阴极用于锌基电致变色智能窗口。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-15 DOI: 10.1002/smtd.71123
Renald Sangarane, Hamid Palamadathil Kannattil, Kenneth D Harris, Benoît Limoges, Véronique Balland

Prussian Blue (PB) is an attractive electrochromic cathode material for aqueous electrochromic energy-storage smart windows, but its performance remains limited by the low areal capacity of thin-coatings deposited on planar transparent conductive oxides. Here, we overcome this limitation by combining galvanostatic electrodeposition with 3D-nanostructured ITO electrodes, enabling conformal growth of PB with high-loadings, while maintaining mechanical stability and fast electrochemical response. The resulting electrodes sustain charge densities up to 100 mC/cm2 at relatively high rates. When integrated into Zn/PB smart window devices, they enable fast and homogeneous coloration/bleaching with enhanced optical contrast and charge storage capacity, while also exhibiting high cyclability. Device configurations based on reversible Zn electrodeposition onto a transparent ITO counter electrode enable improved control over optical contrast and electric field distribution, while a three-electrode architecture incorporating a sacrificial Zn anode provides a route toward in situ regeneration of the electrochromic cathode and extended device lifetime.

普鲁士蓝(PB)是一种很有吸引力的电致变色材料,用于水相电致变色储能智能窗,但其性能仍然受到沉积在平面透明导电氧化物上的薄涂层面积容量低的限制。在这里,我们通过将恒流电沉积与3d纳米结构ITO电极相结合,克服了这一限制,实现了高负载下PB的适形生长,同时保持了机械稳定性和快速的电化学响应。所得电极在相对较高的速率下维持高达100 mC/cm2的电荷密度。当集成到Zn/PB智能窗口器件中时,它们可以实现快速均匀的着色/漂白,增强光学对比度和电荷存储容量,同时还具有高可循环性。基于可逆Zn电沉积在透明ITO对电极上的器件结构可以改善对光学对比度和电场分布的控制,而包含牺牲Zn阳极的三电极结构为电致变色阴极的原位再生和延长器件寿命提供了途径。
{"title":"3D-Nanostructured ITO Enables High-Loading Prussian Blue Cathodes for Zn-Based Electrochromic Smart Windows.","authors":"Renald Sangarane, Hamid Palamadathil Kannattil, Kenneth D Harris, Benoît Limoges, Véronique Balland","doi":"10.1002/smtd.71123","DOIUrl":"https://doi.org/10.1002/smtd.71123","url":null,"abstract":"<p><p>Prussian Blue (PB) is an attractive electrochromic cathode material for aqueous electrochromic energy-storage smart windows, but its performance remains limited by the low areal capacity of thin-coatings deposited on planar transparent conductive oxides. Here, we overcome this limitation by combining galvanostatic electrodeposition with 3D-nanostructured ITO electrodes, enabling conformal growth of PB with high-loadings, while maintaining mechanical stability and fast electrochemical response. The resulting electrodes sustain charge densities up to 100 mC/cm<sup>2</sup> at relatively high rates. When integrated into Zn/PB smart window devices, they enable fast and homogeneous coloration/bleaching with enhanced optical contrast and charge storage capacity, while also exhibiting high cyclability. Device configurations based on reversible Zn electrodeposition onto a transparent ITO counter electrode enable improved control over optical contrast and electric field distribution, while a three-electrode architecture incorporating a sacrificial Zn anode provides a route toward in situ regeneration of the electrochromic cathode and extended device lifetime.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71123"},"PeriodicalIF":8.7,"publicationDate":"2026-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149178339","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Cooperative Bulk-Interface Regulation Through Na/F/Al Functional Synergy Enables Structural and Interfacial Stability in Li-Rich Layered Oxides. 通过Na/F/Al功能协同作用的协同体界面调节实现富锂层状氧化物的结构和界面稳定性。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-15 DOI: 10.1002/smtd.71128
Weizhi Peng, Ruilong Liu, Taotao Zeng, Wenting Li, Yongyan Zhou, Huiqian Liu, Xin Yang, Wei Xie, Hao He, Zhao Liang

Lithium rich manganese layered oxides (LRMs) are promising cathode materials for high energy lithium-ion batteries owing to their high capacity and low cost, yet their practical applications are limited by lattice degradation and unstable cathode electrolyte interphase (CEI) evolution during cycling. Herein, a fluorine enriched multifunctional Li1.2Mn0.54Ni0.13Co0.13O2(LRM) is constructed through Na+, F-, and Al3+ synergistic regulation to achieve bulk surface stabilization. The introduction of Na+ broadens Li interlayer spacing and accelerates Li+ transport, while Al-O bonding stabilizes the local electronic structure, suppresses cation disorder and Jahn-Teller distortion, and alleviates lattice strain. Furthermore, the preformed fluorine enriched surface region reinforces the outer lattice through the formation of robust F-TM bonds, promoting the generation of a uniform and stable CEI layer, mitigating electrolyte decomposition and interfacial reactions. The optimized NFA-LRM delivers a high discharge capacity of 318.7 mAh g-1 at 0.1 C, with reversible capacities of 140.6 and 108.5 mAh g-1 at 5 C and 10 C, respectively, and retains 96.29% capacity after 250 cycles at 2 C. This work provides a bulk and surface synergistic strategy for high energy LRMs with stabilized oxygen chemistry and durable interfacial stability.

富锂锰层状氧化物(lrm)具有高容量、低成本等优点,是一种很有前途的高能锂离子电池正极材料,但其实际应用受到循环过程中晶格退化和阴极电解质间相(CEI)不稳定演变的限制。本文通过Na+、F-和Al3+的协同调控,构建了富氟多功能Li1.2Mn0.54Ni0.13Co0.13O2(LRM),实现了体表面稳定。Na+的引入扩大了Li层间距,加速了Li+的输运,而Al-O键稳定了局部电子结构,抑制了阳离子无序和Jahn-Teller畸变,减轻了晶格应变。此外,预形成的富氟表面区域通过形成坚固的F-TM键加强了外晶格,促进了均匀稳定的CEI层的生成,减轻了电解质分解和界面反应。优化后的NFA-LRM在0.1℃下的放电容量为318.7 mAh g-1,在5℃和10℃下的可逆容量分别为140.6和108.5 mAh g-1,在2℃下循环250次后仍保持96.29%的容量。这项工作为具有稳定氧化学和持久界面稳定性的高能lrm提供了体积和表面协同策略。
{"title":"Cooperative Bulk-Interface Regulation Through Na/F/Al Functional Synergy Enables Structural and Interfacial Stability in Li-Rich Layered Oxides.","authors":"Weizhi Peng, Ruilong Liu, Taotao Zeng, Wenting Li, Yongyan Zhou, Huiqian Liu, Xin Yang, Wei Xie, Hao He, Zhao Liang","doi":"10.1002/smtd.71128","DOIUrl":"https://doi.org/10.1002/smtd.71128","url":null,"abstract":"<p><p>Lithium rich manganese layered oxides (LRMs) are promising cathode materials for high energy lithium-ion batteries owing to their high capacity and low cost, yet their practical applications are limited by lattice degradation and unstable cathode electrolyte interphase (CEI) evolution during cycling. Herein, a fluorine enriched multifunctional Li<sub>1.2</sub>Mn<sub>0.54</sub>Ni<sub>0.13</sub>Co<sub>0.13</sub>O<sub>2</sub>(LRM) is constructed through Na<sup>+</sup>, F<sup>-</sup>, and Al<sup>3+</sup> synergistic regulation to achieve bulk surface stabilization. The introduction of Na<sup>+</sup> broadens Li interlayer spacing and accelerates Li<sup>+</sup> transport, while Al-O bonding stabilizes the local electronic structure, suppresses cation disorder and Jahn-Teller distortion, and alleviates lattice strain. Furthermore, the preformed fluorine enriched surface region reinforces the outer lattice through the formation of robust F-TM bonds, promoting the generation of a uniform and stable CEI layer, mitigating electrolyte decomposition and interfacial reactions. The optimized NFA-LRM delivers a high discharge capacity of 318.7 mAh g<sup>-1</sup> at 0.1 C, with reversible capacities of 140.6 and 108.5 mAh g<sup>-1</sup> at 5 C and 10 C, respectively, and retains 96.29% capacity after 250 cycles at 2 C. This work provides a bulk and surface synergistic strategy for high energy LRMs with stabilized oxygen chemistry and durable interfacial stability.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71128"},"PeriodicalIF":8.7,"publicationDate":"2026-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149190362","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Retrospective Benchmark of Quantitative Antimicrobial Peptide Activity Prediction Tools. 定量抗菌肽活性预测工具的回顾性基准。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-15 DOI: 10.1002/smtd.71137
Jianda Yue, Zhaoyang Tang, Xie Li, Jiawei Xu, Hua Tan, Qizhang Yang, Zhonghua Liu, Ying Wang

Antimicrobial peptides (AMPs) are critical candidates for addressing the global antibiotic resistance crisis. AI-driven quantitative models capable of directly predicting peptide antimicrobial activity, specifically minimum inhibitory concentration (MIC), are gaining scientific prominence by providing precise guidance for the rational design of AMPs. To assess their real-world, out-of-the-box performance, we conducted a retrospective benchmark of 10 publicly released quantitative AMP prediction tools spanning classical machine learning and contemporary deep learning approaches. Using an external dataset and reconstructed native datasets, we evaluated absolute MIC regression, retrospective reproducibility, directional prediction patterns, ranking capability, and virtual-screening enrichment. Most released tools exhibited poor absolute MIC regression and limited transferability to the external benchmark, while selected tools retained useful relative-ranking and enrichment capabilities. Retrospective evaluation further revealed marked differences in implementation-level reproducibility among the released tools. Error-stratified analyses identified systematic associations between prediction errors and peptide residue composition, together with a general compression of the predicted activity range. Collectively, these findings characterize the practical performance boundaries of currently accessible quantitative AMP prediction tools and support their use primarily as early-stage screening filters rather than precise substitutes for experimental MIC measurements.

抗菌肽(AMPs)是解决全球抗生素耐药性危机的关键候选者。人工智能驱动的定量模型能够直接预测肽的抗菌活性,特别是最低抑制浓度(MIC),通过为抗菌肽的合理设计提供精确指导,正在获得科学上的重视。为了评估它们在现实世界中的开箱即用性能,我们对10个公开发布的定量AMP预测工具进行了回顾性基准测试,这些工具涵盖了经典机器学习和当代深度学习方法。使用外部数据集和重建的本地数据集,我们评估了绝对MIC回归、回顾性可重复性、定向预测模式、排序能力和虚拟筛选富集。大多数发布的工具表现出较差的绝对MIC回归和有限的可转移到外部基准,而选择的工具保留了有用的相对排名和丰富能力。回顾性评估进一步揭示了已发布的工具在实现级可重复性方面的显著差异。误差分层分析确定了预测误差与肽残基组成之间的系统关联,以及预测活性范围的一般压缩。总的来说,这些发现描述了目前可获得的定量AMP预测工具的实际性能界限,并支持它们主要用作早期筛选过滤器,而不是实验性MIC测量的精确替代品。
{"title":"A Retrospective Benchmark of Quantitative Antimicrobial Peptide Activity Prediction Tools.","authors":"Jianda Yue, Zhaoyang Tang, Xie Li, Jiawei Xu, Hua Tan, Qizhang Yang, Zhonghua Liu, Ying Wang","doi":"10.1002/smtd.71137","DOIUrl":"https://doi.org/10.1002/smtd.71137","url":null,"abstract":"<p><p>Antimicrobial peptides (AMPs) are critical candidates for addressing the global antibiotic resistance crisis. AI-driven quantitative models capable of directly predicting peptide antimicrobial activity, specifically minimum inhibitory concentration (MIC), are gaining scientific prominence by providing precise guidance for the rational design of AMPs. To assess their real-world, out-of-the-box performance, we conducted a retrospective benchmark of 10 publicly released quantitative AMP prediction tools spanning classical machine learning and contemporary deep learning approaches. Using an external dataset and reconstructed native datasets, we evaluated absolute MIC regression, retrospective reproducibility, directional prediction patterns, ranking capability, and virtual-screening enrichment. Most released tools exhibited poor absolute MIC regression and limited transferability to the external benchmark, while selected tools retained useful relative-ranking and enrichment capabilities. Retrospective evaluation further revealed marked differences in implementation-level reproducibility among the released tools. Error-stratified analyses identified systematic associations between prediction errors and peptide residue composition, together with a general compression of the predicted activity range. Collectively, these findings characterize the practical performance boundaries of currently accessible quantitative AMP prediction tools and support their use primarily as early-stage screening filters rather than precise substitutes for experimental MIC measurements.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71137"},"PeriodicalIF":8.7,"publicationDate":"2026-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149190098","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bionic Structural Design of Multifunctional Flexible Polypyrrole Sensors for Human Health Monitoring. 人体健康监测用多功能柔性聚吡咯传感器的仿生结构设计。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-15 DOI: 10.1002/smtd.71134
Mingqian Sheng, Mingyang Qiu, Enchong Ning, Zhuoyu Yang, Junlin Wang, Qinyan Liu, Yanling Tan, Min Liao, Bitao Liu, Lingling Peng, Wenbo Chen, Tong Feng, Huijian Liu, Zhongyan Gao

Rehabilitation medicine is an essential component of universal health coverage, while emerging electronic skin offers new opportunities for portable and personalized healthcare. However, flexible pressure sensors still face trade-offs among sensitivity, detection range, and stability, and gas sensors remain challenged by low-concentration detection and environmental robustness. Herein, a biomimetic "Thalia dealbata" microstructured hydrophobic polypyrrole/polydimethylsiloxane (S@PPy/PDMS) composite sensor was fabricated through a one-step template method and controllable in situ polymerization. The biomimetic PDMS microstructure enhances pressure response, while conductive and NH3-sensitive PPy enables dual-mode pressure and gas sensing on a single flexible platform. The sensor exhibits a wide pressure range of 0-25 kPa, a high sensitivity of 3.617 kPa- 1, and excellent durability over 19 500 compression-release cycles. It also detects NH3 concentrations as low as 1 ppm with stable performance over 60 days. The dual-functional sensor enables complementary monitoring of mechanical physiological signals, including respiration, pulse, and body motion, together with metabolic information from exhaled NH3. A five-channel sensor array further decodes numerical gestures with 100% accuracy via machine learning and wireless communication. Integrating respiratory mechanical sensing with exhaled NH3 detection, this platform offers potential for longitudinal, noninvasive multiparametric monitoring, particularly for CKD assessment, human-machine interfaces, smart wearables, assistive technologies, and telemedicine.

康复医学是全民健康覆盖的重要组成部分,而新兴的电子皮肤为便携式和个性化医疗保健提供了新的机会。然而,柔性压力传感器仍然面临灵敏度、检测范围和稳定性之间的权衡,而气体传感器仍然面临低浓度检测和环境鲁棒性的挑战。本文采用一步模板法和可控原位聚合法制备了仿生“塔利亚”(Thalia dealbata)微结构疏水聚吡咯/聚二甲基硅氧烷(S@PPy/PDMS)复合传感器。仿生PDMS微结构增强了压力响应,而导电和nh3敏感PPy可在单个柔性平台上实现双模式压力和气体传感。该传感器具有0-25 kPa的宽压力范围,3.617 kPa- 1的高灵敏度,以及超过19 500次压缩释放循环的优异耐久性。它还可以检测低至1ppm的NH3浓度,性能稳定超过60天。这种双功能传感器可以对机械生理信号进行互补监测,包括呼吸、脉搏和身体运动,以及呼出的NH3的代谢信息。通过机器学习和无线通信,五通道传感器阵列进一步以100%的准确率解码数字手势。该平台将呼吸机械传感与呼出NH3检测相结合,具有纵向、无创多参数监测的潜力,尤其适用于CKD评估、人机界面、智能可穿戴设备、辅助技术和远程医疗。
{"title":"Bionic Structural Design of Multifunctional Flexible Polypyrrole Sensors for Human Health Monitoring.","authors":"Mingqian Sheng, Mingyang Qiu, Enchong Ning, Zhuoyu Yang, Junlin Wang, Qinyan Liu, Yanling Tan, Min Liao, Bitao Liu, Lingling Peng, Wenbo Chen, Tong Feng, Huijian Liu, Zhongyan Gao","doi":"10.1002/smtd.71134","DOIUrl":"https://doi.org/10.1002/smtd.71134","url":null,"abstract":"<p><p>Rehabilitation medicine is an essential component of universal health coverage, while emerging electronic skin offers new opportunities for portable and personalized healthcare. However, flexible pressure sensors still face trade-offs among sensitivity, detection range, and stability, and gas sensors remain challenged by low-concentration detection and environmental robustness. Herein, a biomimetic \"Thalia dealbata\" microstructured hydrophobic polypyrrole/polydimethylsiloxane (S@PPy/PDMS) composite sensor was fabricated through a one-step template method and controllable in situ polymerization. The biomimetic PDMS microstructure enhances pressure response, while conductive and NH<sub>3</sub>-sensitive PPy enables dual-mode pressure and gas sensing on a single flexible platform. The sensor exhibits a wide pressure range of 0-25 kPa, a high sensitivity of 3.617 kPa<sup>-</sup> <sup>1</sup>, and excellent durability over 19 500 compression-release cycles. It also detects NH<sub>3</sub> concentrations as low as 1 ppm with stable performance over 60 days. The dual-functional sensor enables complementary monitoring of mechanical physiological signals, including respiration, pulse, and body motion, together with metabolic information from exhaled NH<sub>3</sub>. A five-channel sensor array further decodes numerical gestures with 100% accuracy via machine learning and wireless communication. Integrating respiratory mechanical sensing with exhaled NH<sub>3</sub> detection, this platform offers potential for longitudinal, noninvasive multiparametric monitoring, particularly for CKD assessment, human-machine interfaces, smart wearables, assistive technologies, and telemedicine.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71134"},"PeriodicalIF":8.7,"publicationDate":"2026-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149178387","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A π-Conjugated Polymer Anode With Railway-Like NH4 + Pathways for High-Rate Aqueous Ammonium-Ion Batteries. 高倍率氨离子电池用轨道状NH4 +通路π共轭聚合物阳极。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-14 DOI: 10.1002/smtd.71131
Zirui Lin, Dan Liu, Jiangmin Jiang, Fengcui Cheng, Xiang Cai

Aqueous ammonium-ion batteries (AAIBs) are promising energy storage systems, while the relatively large size and tetrahedral geometry of NH4 + present challenges for its transport within electrodes. Herein, poly(5,8-diaza-1,4-naphthoquinone) (PANQ) has been synthesized to facilitate NH4 + transport in AAIBs. The π-conjugated PANQ possesses a rigid, linear molecular structure. The straight intermolecular slits with uniformly distributed carbonyl sites form railway-like NH4 + pathways, enabling rapid ion transport through the dynamic formation and disruption of hydrogen bonds. The PANQ electrode delivers a high capacity of 286.8 mAh g-1 at 1 A g-1 in a 2 mol L-1 ammonium acetate electrolyte. Thanks to the rapid NH4 + transport pathways, the electrode displays an excellent rate capability, retaining 161.7 mAh g-1 at 80 A g-1. Moreover, it displays exceptional cycling stability over 10 000 cycles at 20 A g-1. The PANQ electrode was employed as the anode in a PANQ//NiCo-LDH AAIB (NiCo-LDH represents the Ni-Co layered double hydroxide cathode), retaining an energy density of 25.2 Wh kg-1 even at an ultrahigh power density of 23 320.2 W kg-1. This study provides a high-performance electrode candidate for AAIBs and a strategy for constructing rapid ion-transport pathways to enable efficient NH4 + storage and superior electrochemical kinetics.

水铵离子电池(AAIBs)是一种很有前途的储能系统,但相对较大的尺寸和四面体的几何结构对NH4 +在电极内的传输提出了挑战。本文合成了聚(5,8-二氮杂-1,4-萘醌)(PANQ),以促进NH4 +在AAIBs中的转运。π共轭PANQ具有刚性的线性分子结构。具有均匀分布的羰基位点的分子间直缝形成了类似铁路的NH4 +通路,通过氢键的动态形成和破坏实现了离子的快速运输。PANQ电极在2 mol L-1醋酸铵电解质中,在1 a g-1下提供286.8 mAh g-1的高容量。由于NH4 +的快速传输途径,电极显示出优异的速率能力,在80 A g-1时保持161.7 mAh g-1。此外,它在20 A g-1下显示出超过10,000次循环的卓越循环稳定性。在PANQ//NiCo-LDH AAIB (NiCo-LDH代表Ni-Co层状双氢氧化物阴极)中,PANQ电极作为阳极,在23320.2 W kg-1的超高功率密度下仍保持25.2 Wh kg-1的能量密度。该研究为AAIBs提供了一种高性能的候选电极,并为构建快速离子传输途径提供了一种策略,以实现高效的NH4 +存储和优越的电化学动力学。
{"title":"A π-Conjugated Polymer Anode With Railway-Like NH<sub>4</sub> <sup>+</sup> Pathways for High-Rate Aqueous Ammonium-Ion Batteries.","authors":"Zirui Lin, Dan Liu, Jiangmin Jiang, Fengcui Cheng, Xiang Cai","doi":"10.1002/smtd.71131","DOIUrl":"https://doi.org/10.1002/smtd.71131","url":null,"abstract":"<p><p>Aqueous ammonium-ion batteries (AAIBs) are promising energy storage systems, while the relatively large size and tetrahedral geometry of NH<sub>4</sub> <sup>+</sup> present challenges for its transport within electrodes. Herein, poly(5,8-diaza-1,4-naphthoquinone) (PANQ) has been synthesized to facilitate NH<sub>4</sub> <sup>+</sup> transport in AAIBs. The π-conjugated PANQ possesses a rigid, linear molecular structure. The straight intermolecular slits with uniformly distributed carbonyl sites form railway-like NH<sub>4</sub> <sup>+</sup> pathways, enabling rapid ion transport through the dynamic formation and disruption of hydrogen bonds. The PANQ electrode delivers a high capacity of 286.8 mAh g<sup>-1</sup> at 1 A g<sup>-1</sup> in a 2 mol L<sup>-1</sup> ammonium acetate electrolyte. Thanks to the rapid NH<sub>4</sub> <sup>+</sup> transport pathways, the electrode displays an excellent rate capability, retaining 161.7 mAh g<sup>-1</sup> at 80 A g<sup>-1</sup>. Moreover, it displays exceptional cycling stability over 10 000 cycles at 20 A g<sup>-1</sup>. The PANQ electrode was employed as the anode in a PANQ//NiCo-LDH AAIB (NiCo-LDH represents the Ni-Co layered double hydroxide cathode), retaining an energy density of 25.2 Wh kg<sup>-1</sup> even at an ultrahigh power density of 23 320.2 W kg<sup>-1</sup>. This study provides a high-performance electrode candidate for AAIBs and a strategy for constructing rapid ion-transport pathways to enable efficient NH<sub>4</sub> <sup>+</sup> storage and superior electrochemical kinetics.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71131"},"PeriodicalIF":8.7,"publicationDate":"2026-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149178408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Label-Free YaxAB Nanopore Fingerprinting of Cancer-Associated Single-Residue Bcl-xL Variants. 癌症相关单残留Bcl-xL变异的无标记YaxAB纳米孔指纹图谱
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-14 DOI: 10.1002/smtd.71126
Minji Chung, Sohee Oh, Jin-Sik Kim, Sungbo Hwang, Ki-Baek Jeong, Seung-Wook Chi

Resolving cancer-associated protein variants remains difficult when variants share similar molecular masses and folded structures. Conventional assays often require labels or provide ensemble-averaged readouts, limiting their ability to resolve subtle variant differences. Here, a YaxAB nanopore workflow is presented for label-free single-molecule current fingerprinting of wild-type Bcl-xL and the cancer-associated single-residue variants N136K and R165W. Individual Bcl-xL proteins were electro-osmotically trapped within the funnel-shaped YaxAB lumen, where they generated characteristic ionic-current events. These events formed reproducible, analyte-specific event populations in normalized current blockade and current noise space, resolving wild-type Bcl-xL, N136K, and R165W as distinct single-molecule current fingerprints. Wild-type Bcl-xL and N136K remained distinct despite a mass difference of only 14 Da, and the fingerprint separation was consistent with combined differences in excluded volume, net charge, and dipole moment. Concentration-dependent capture-rate analysis further supported sub-nanomolar to low-nanomolar detection corresponding to protein amounts in the sub-picomole to low-picomole range, while capture-rate normalization brought the estimated concentrations closer to the nominal concentrations. These results present YaxAB nanopore sensing as a label-free single-molecule workflow for the current fingerprinting of cancer-associated single-residue Bcl-xL variants, with low-concentration detection as a supporting analytical capability.

当变异具有相似的分子质量和折叠结构时,解决癌症相关蛋白变异仍然很困难。常规检测通常需要标记或提供整体平均读数,限制了其解决细微变异差异的能力。本文提出了一种YaxAB纳米孔工作流程,用于野生型Bcl-xL和癌症相关的单残基变异N136K和R165W的无标记单分子电流指纹识别。单个Bcl-xL蛋白被电渗透捕获在漏斗状的YaxAB管腔内,在那里它们产生特征离子电流事件。这些事件在归一化电流阻断和电流噪声空间中形成了可重复的、分析物特异性的事件群,将野生型Bcl-xL、N136K和R165W分解为不同的单分子电流指纹。野生型Bcl-xL和N136K的质量差异仅为14 Da,指纹分离与排除体积、净电荷和偶极矩的综合差异一致。浓度依赖的捕获率分析进一步支持亚纳摩尔到低纳摩尔检测,对应于亚皮摩尔到低皮摩尔范围内的蛋白质量,而捕获率归一化使估计浓度更接近标称浓度。这些结果表明,YaxAB纳米孔传感是一种无标记的单分子工作流程,可用于当前与癌症相关的单残留Bcl-xL变异的指纹识别,并具有低浓度检测作为支持分析能力。
{"title":"Label-Free YaxAB Nanopore Fingerprinting of Cancer-Associated Single-Residue Bcl-xL Variants.","authors":"Minji Chung, Sohee Oh, Jin-Sik Kim, Sungbo Hwang, Ki-Baek Jeong, Seung-Wook Chi","doi":"10.1002/smtd.71126","DOIUrl":"https://doi.org/10.1002/smtd.71126","url":null,"abstract":"<p><p>Resolving cancer-associated protein variants remains difficult when variants share similar molecular masses and folded structures. Conventional assays often require labels or provide ensemble-averaged readouts, limiting their ability to resolve subtle variant differences. Here, a YaxAB nanopore workflow is presented for label-free single-molecule current fingerprinting of wild-type Bcl-xL and the cancer-associated single-residue variants N136K and R165W. Individual Bcl-xL proteins were electro-osmotically trapped within the funnel-shaped YaxAB lumen, where they generated characteristic ionic-current events. These events formed reproducible, analyte-specific event populations in normalized current blockade and current noise space, resolving wild-type Bcl-xL, N136K, and R165W as distinct single-molecule current fingerprints. Wild-type Bcl-xL and N136K remained distinct despite a mass difference of only 14 Da, and the fingerprint separation was consistent with combined differences in excluded volume, net charge, and dipole moment. Concentration-dependent capture-rate analysis further supported sub-nanomolar to low-nanomolar detection corresponding to protein amounts in the sub-picomole to low-picomole range, while capture-rate normalization brought the estimated concentrations closer to the nominal concentrations. These results present YaxAB nanopore sensing as a label-free single-molecule workflow for the current fingerprinting of cancer-associated single-residue Bcl-xL variants, with low-concentration detection as a supporting analytical capability.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71126"},"PeriodicalIF":8.7,"publicationDate":"2026-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149178333","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Non-Perturbative Bacterial Identification Directly From Solid Agar Plates Using Raman Micro-Spectroscopy and Machine Learning. 利用拉曼微光谱和机器学习直接从固体琼脂板上进行非微扰细菌鉴定。
IF 8.7 2区 材料科学 Q1 CHEMISTRY, PHYSICAL Pub Date : 2026-10-14 DOI: 10.1002/smtd.71013
Jeong Hee Kim, Jia Dong, Marissa Morales, Loza Tadesse

Raman spectroscopy is a promising tool for microbial identification, yet its implementation in microbiology and clinical workflow is still restricted due to the accompanying additional preparation required to focus on microbial signals. Here, we demonstrate Raman-based bacterial identification directly from unopened, inverted agar plates, the same conditions used during incubation. Our approach enabled sensitive identification using two Escherichia coli variants, differing only in green fluorescent protein (GFP) expression, across diverse media and substrate material conditions, despite the interrogation path traversing 3-4 mm thick background material. We integrated traditional density functional theory (DFT)-based material computation with machine learning analysis, achieving over 97.7% classification accuracy, surpassing the performance of standard measurements from opened plates by 10.8% higher mean accuracy and 0.76% less variance. We further demonstrated Raman mapping-based colony identification via Raman peaks characteristic to GFPmut3 chromophore structure generated by DFT. Our approach is robust to changes in algorithms or substrate materials and promises real-time, non-perturbative monitoring of bacterial growth, biofilm formation, and antimicrobial resistance development.

拉曼光谱是一种很有前途的微生物鉴定工具,但由于需要额外的准备来关注微生物信号,因此它在微生物学和临床工作流程中的实施仍然受到限制。在这里,我们演示了拉曼基于细菌鉴定直接从未开封,倒置琼脂板,在孵育期间使用相同的条件。我们的方法能够使用两种大肠杆菌变体进行敏感鉴定,仅在绿色荧光蛋白(GFP)表达上不同,在不同的培养基和底物条件下,尽管询问路径穿过3-4 mm厚的背景材料。我们将传统的基于密度泛函理论(DFT)的材料计算与机器学习分析相结合,实现了97.7%以上的分类准确率,比标准的开口板测量的平均准确率提高了10.8%,方差减少了0.76%。我们进一步通过DFT生成的GFPmut3发色团结构的拉曼峰特征证明了基于拉曼映射的集落识别。我们的方法对算法或底物材料的变化具有鲁棒性,并承诺实时、无扰动地监测细菌生长、生物膜形成和抗菌素耐药性的发展。
{"title":"Non-Perturbative Bacterial Identification Directly From Solid Agar Plates Using Raman Micro-Spectroscopy and Machine Learning.","authors":"Jeong Hee Kim, Jia Dong, Marissa Morales, Loza Tadesse","doi":"10.1002/smtd.71013","DOIUrl":"https://doi.org/10.1002/smtd.71013","url":null,"abstract":"<p><p>Raman spectroscopy is a promising tool for microbial identification, yet its implementation in microbiology and clinical workflow is still restricted due to the accompanying additional preparation required to focus on microbial signals. Here, we demonstrate Raman-based bacterial identification directly from unopened, inverted agar plates, the same conditions used during incubation. Our approach enabled sensitive identification using two Escherichia coli variants, differing only in green fluorescent protein (GFP) expression, across diverse media and substrate material conditions, despite the interrogation path traversing 3-4 mm thick background material. We integrated traditional density functional theory (DFT)-based material computation with machine learning analysis, achieving over 97.7% classification accuracy, surpassing the performance of standard measurements from opened plates by 10.8% higher mean accuracy and 0.76% less variance. We further demonstrated Raman mapping-based colony identification via Raman peaks characteristic to GFPmut3 chromophore structure generated by DFT. Our approach is robust to changes in algorithms or substrate materials and promises real-time, non-perturbative monitoring of bacterial growth, biofilm formation, and antimicrobial resistance development.</p>","PeriodicalId":229,"journal":{"name":"Small Methods","volume":" ","pages":"e71013"},"PeriodicalIF":8.7,"publicationDate":"2026-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149178379","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"材料科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Small Methods
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
﹀
mjeditor
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1