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Alternative splice acceptor site in MSH4 gene is responsible for male sterility conferred by ms5 in soybean MSH4基因的可变剪接受体位点与大豆ms5的雄性不育有关
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-15 DOI: 10.1111/tpj.70192
Teruki Nagayama, Hiroshi Yamatani, Naoya Yamaguchi, Hidenari Igarashi, Mai Tsuda, Shin Kato, Koji Takahashi, Akito Kaga

In soybean breeding, using the recessive male-sterile ms5 gene, derived from fast neutron mutagenesis, for recurrent selection is advantageous because of the d2 locus, which controls cotyledon color in mature seeds and can be used as a phenotypic selection marker for ms5 male sterility. However, occasional self-fertilization occurs because of the elimination of d2 linkage and instability of male sterility. Elucidating the mechanism and the gene responsible for ms5 male sterility may resolve these problems. Using fine mapping with 15 simple sequence repeat (SSR) markers, we narrowed down the candidate ms5 locus to a 54-kbp region. Bulked-DNA analysis using next-generation sequencing revealed a deletion as a candidate variation in the region. This 15-bp deletion and a nucleotide substitution were identified in intron 1 of MutS homolog (GmMSH4), which modulates chromosomal recombination in meiosis. The ms5 transcript contained a novel exon with a premature termination codon. This exon originated from an alternative splice acceptor site caused by the deletion and nucleotide substitution, disrupting gene function. Co-segregation of male sterility with five independent mutations in GmMSH4 was confirmed using progeny of mutant lines. Mutations in GmMSH4 led to biased DNA partitioning during meiosis, resulting in collapsed or enlarged pollen and suggesting that ms5 male sterility is caused by the failure of pollen formation during meiosis due to the loss of function of GmMSH4. These findings could help explain the mechanism of instability of ms5 male sterility and improve the efficiency of recurrent selection using DNA markers in soybean breeding.

在大豆育种中,利用快中子诱变获得的隐性雄性不育基因ms5进行循环选择是有利的,因为d2位点控制成熟种子子叶颜色,可以作为ms5雄性不育的表型选择标记。然而,由于d2连锁的消除和雄性不育的不稳定性,偶尔会发生自交受精。阐明ms5雄性不育的机制和基因可以解决这些问题。通过对15个SSR标记的精细定位,我们将候选的ms5位点缩小到54kbp的区域。使用下一代测序的大体积dna分析显示,该区域的候选变异是缺失。在MutS同源基因(GmMSH4)的内含子1中发现了15 bp的缺失和核苷酸替换,该基因在减数分裂中调节染色体重组。ms5转录本包含一个带有过早终止密码子的新外显子。这个外显子起源于一个由缺失和核苷酸替换引起的替代剪接受体位点,破坏了基因功能。利用突变系的后代证实了GmMSH4与5个独立突变的雄性不育共分离。GmMSH4基因突变导致减数分裂时DNA分裂偏倚,导致花粉塌陷或增大,提示ms5雄性不育是由于GmMSH4基因功能丧失导致减数分裂时花粉形成失败所致。这些发现有助于解释ms5雄性不育不稳定性的机制,提高大豆育种中利用DNA标记进行循环选择的效率。
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引用次数: 0
The IbDof2.1–IbABF2 module regulates abscisic acid responses and proline biosynthesis to enhance drought tolerance in sweetpotato IbDof2.1-IbABF2模块通过调控脱落酸响应和脯氨酸生物合成来提高甘薯的抗旱性
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-15 DOI: 10.1111/tpj.70218
Yuxin Wang, Qinghao Zhan`g, Zhidan Zuo, Yue Fan, Luyao Xue, Huan Zhang, Shaopei Gao, Hong Zhai, Shaozhen He, Ning Zhao, Qingchang Liu

Drought is a major abiotic stress that impairs plant growth and development. Developing drought-tolerant crop varieties is an important goal of breeders. Transcription factors belonging to the DNA-binding with one zinc finger (Dof) family regulate plant stress responses and development. However, the roles and regulatory mechanisms of Dof2.1 members in plant stress tolerance are still unclear. Here, we cloned the IbDof2.1 gene from sweetpotato and found that its overexpression significantly enhanced drought tolerance of sweetpotato, whereas IbDof2.1-RNA interference (RNAi) plants displayed the opposite phenotype. The IbDof2.1-overexpression plants showed increased abscisic acid (ABA) and proline contents and stomatal sensitivity to ABA and decreased H2O2 accumulation. Furthermore, we found that IbDof2.1 interacted with ABA-binding factor 2 (IbABF2) and promoted the expression of the proline biosynthesis gene IbP5CS1 to increase proline content, further activating the reactive oxygen species (ROS) scavenging system. These results suggest that the IbDof2.1–IbABF2 module induces stomatal closure and activates the ROS scavenging system by regulating ABA responses and proline biosynthesis to enhance drought tolerance in sweetpotato. Our findings provide novel insights into the roles and regulatory mechanisms of Dof2.1 in plants.

干旱是影响植物生长发育的主要非生物胁迫。培育耐旱作物品种是育种工作者的一个重要目标。锌指(Dof)家族的dna结合转录因子调控着植物的逆境反应和发育。然而,Dof2.1成员在植物抗逆性中的作用和调控机制尚不清楚。本研究从甘薯中克隆了IbDof2.1基因,发现其过表达显著增强了甘薯的耐旱性,而IbDof2.1- rna干扰(RNAi)植物表现出相反的表型。ibdof2.1过表达植株ABA和脯氨酸含量增加,气孔对ABA的敏感性增加,H2O2积累减少。此外,我们发现IbDof2.1与aba结合因子2 (IbABF2)相互作用,促进脯氨酸生物合成基因IbP5CS1的表达,增加脯氨酸含量,进一步激活活性氧(ROS)清除系统。这些结果表明,IbDof2.1-IbABF2模块通过调节ABA响应和脯氨酸生物合成,诱导气孔关闭,激活ROS清除系统,从而提高甘薯的抗旱性。我们的研究结果为Dof2.1在植物中的作用和调控机制提供了新的见解。
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引用次数: 0
miR827 increases susceptibility to Alternaria alternata by shearing the mRNAs of low-affinity phosphate transporters PHT5-2 and PHT5-3 in apple miR827通过剪切苹果低亲和磷酸转运蛋白PHT5-2和PHT5-3的mrna,增加了苹果对交替稻瘟菌的敏感性
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-15 DOI: 10.1111/tpj.70222
Lifang Cao, Changguo Luo, Yiting Liu, Liming Lan, Tingting Zhou, Kaixu Hu, Sanhong Wang, Xinyi Yu, Shenchun Qu

Apple leaf spot disease, caused by Alternaria alternata, significantly impacts apple production. Phosphorus plays a crucial role in maintaining the healthy growth of plants and enhancing their defense against pathogens. Both low-affinity and high-affinity phosphate transporters are important proteins involved in the response to phosphate starvation and increasing phosphate content. The difference is that the former does not easily cause excessive accumulation of phosphorus, leading to phosphorus toxicity in plants. Currently, the defense mechanisms mediated by low-affinity phosphate transporters in apples are not well understood. In this study, we identified two low-affinity phosphate transporters, PHT5-2 and PHT5-3. Compared to the control, although the overexpression of PHT5-2 and PHT5-3 increased phosphorus content in the plants, it did not result in growth defects. Furthermore, the overexpression of PHT5-2 and PHT5-3 led to increased callose deposition, enhancing resistance to A. alternata. We verified that the non-coding sRNA-miR827 binds to the mRNA of PHT5-2 and PHT5-3 via complementary base pairing and suppresses their expression by cleaving the 5′ UTR regions using 5′ RLM-RACE and N. benthamiana co-transformation assays. Apple plants overexpressing miR827 showed significantly reduced phosphorus content and severe growth defects, accompanied by decreased callose deposition and weakened disease resistance. In summary, our research results reveal the mechanism by which miR827 regulates phosphate transporters involved in the defense of apples against A. alternata.

苹果叶斑病是由交替稻瘟菌引起的一种严重影响苹果产量的病害。磷在维持植物的健康生长和增强植物对病原体的防御能力方面起着至关重要的作用。低亲和和高亲和的磷酸盐转运蛋白都是参与对磷酸盐饥饿反应和增加磷酸盐含量的重要蛋白质。不同的是,前者不容易造成磷的过量积累,导致植物磷中毒。目前,苹果低亲和磷转运体介导的防御机制尚不清楚。在这项研究中,我们鉴定了两个低亲和力的磷酸盐转运蛋白,PHT5-2和PHT5-3。与对照相比,虽然过表达PHT5-2和PHT5-3增加了植株的磷含量,但并未导致植株生长缺陷。此外,PHT5-2和PHT5-3的过表达导致胼胝质沉积增加,增强了耐药能力。我们利用5 ' RLM-RACE和N. benthamiana共转化实验验证了非编码rna - mir827通过互补碱基配对与PHT5-2和PHT5-3的mRNA结合,并通过切割5 ' UTR区域抑制它们的表达。过表达miR827的苹果植株磷含量显著降低,生长缺陷严重,胼胝质沉积减少,抗病性减弱。综上所述,我们的研究结果揭示了miR827调控磷酸盐转运体参与苹果防御蚜的机制。
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引用次数: 0
Nucleobase-ascorbate transporter OsNAT9 regulates seed vigor and drought tolerance by modulating ascorbic acid homeostasis in rice 核碱基-抗坏血酸转运蛋白OsNAT9通过调节水稻抗坏血酸稳态调节种子活力和抗旱性
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-15 DOI: 10.1111/tpj.70225
Sufeng Liao, Kunyang Li, Yidong Wei, Shuai Zhao, Min Zhang, Jinlan Wang, Jiahuan Jiang, Ting Chen, Fangxi Wu, Jiaxing Fan, Qiuhua Cai, Yingheng Wang, Liping Chen, Wei He, Huaan Xie, Jianfu Zhang

Drought and seed aging severely impact crop yield and seed vigor, respectively. Here, we identified the rice protein OsNAT9, a nucleobase–ascorbate transporter, as being crucial for seed vigor and drought tolerance. Knockout of OsNAT9 resulted in a significant reduction in seed vigor; however, the application of exogenous ascorbic acid (AsA) and the breaking of seed dormancy restored this phenotype, suggesting that OsNAT9 regulates seed vigor by modulating seed dormancy. Furthermore, the Osnat9 mutants exhibited decreased AsA concentration in the endosperm, impairing the scavenging of reactive oxygen species (ROS) in aged seeds, which disrupted starch structure and seed vigor. During the aging process, both the knockout and overexpression of OsNAT9 affected AsA efflux, disrupting the redox homeostasis of AsA pools, increasing ROS accumulation, and ultimately reducing embryo vigor. In addition, the Osnat9 mutants displayed reduced drought tolerance, accompanied by decreased AsA concentration and increased ROS accumulation, whereas OsNAT9-overexpressed lines showed the opposite phenotypes. The OsNAT9 protein exhibited either a uniform or punctate distribution on the cytomembrane. Protoplast secretion assays and microscale thermophoresis experiments further confirmed that OsNAT9 functions as a cytomembrane-localized efflux transporter responsible for AsA secretion. This study highlights the dual role of OsNAT9 in regulating seed vigor and drought tolerance by maintaining the homeostasis of AsA pools and reducing ROS accumulation. These findings provide novel insights into AsA efflux transport and its implications for seed vigor and stress adaptation. Furthermore, this study identifies OsNAT9 as a potential target for enhancing crop stress tolerance and seed longevity.

干旱和种子老化分别严重影响作物产量和种子活力。在这里,我们发现水稻蛋白OsNAT9是一种核碱基-抗坏血酸转运蛋白,对种子活力和耐旱性至关重要。敲除OsNAT9导致种子活力显著降低;然而,外源抗坏血酸(AsA)的应用和种子休眠的打破恢复了这一表型,这表明OsNAT9通过调节种子休眠来调节种子活力。此外,Osnat9突变体胚乳中AsA浓度降低,损害了老化种子中活性氧(ROS)的清除能力,从而破坏了淀粉结构和种子活力。在衰老过程中,OsNAT9的敲除和过表达都会影响AsA的外排,破坏AsA池的氧化还原稳态,增加ROS积累,最终降低胚胎活力。此外,Osnat9突变体表现出抗旱性降低,同时AsA浓度降低,ROS积累增加,而Osnat9过表达系表现出相反的表型。OsNAT9蛋白在细胞膜上呈均匀或点状分布。原生质体分泌实验和微尺度热泳实验进一步证实OsNAT9作为一种细胞膜定位的外排转运蛋白,负责AsA的分泌。这项研究强调了OsNAT9通过维持AsA库的稳态和减少ROS积累来调节种子活力和耐旱性的双重作用。这些发现为AsA外排转运及其对种子活力和胁迫适应的影响提供了新的见解。此外,本研究还确定了OsNAT9作为提高作物抗逆性和种子寿命的潜在靶点。
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引用次数: 0
Rapid degradation of ACLA, a subunit of ATP citrate lyase, via autophagy and 26S proteasome pathways to promote pepper growth-to-tolerance transition under heat stress
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-14 DOI: 10.1111/tpj.70212
Kang Yong, Jie Yang, Xinran Li, Haiyan Li, Guohong Huang, Tao Chen, Minghui Lu

Citric acid in plant cells is crucial for growth as it serves as a precursor to multiple essential compounds. It also helps plants tolerate high temperatures. However, the mechanisms remain unclear regarding how citric acid balances its role in promoting growth and protecting against stress. We identified an ACLA protein, a subunit of ATP citrate lyase (ACL) in pepper (Capsicum annuum), that converts cytosolic citric acid into acetyl-CoA. Silencing ACLA reduced citric acid metabolites, leading to stunted growth and decreased heat tolerance. Conversely, ACLA-2 overexpression increased acetyl-CoA metabolites but reduced citric acid levels, which also led to reduced heat tolerance. However, applying exogenous citrate significantly improved the heat tolerance of ACLA-overexpressing plants compared with wild-types. This suggests that citric acid plays a dual role in the synthesis of structural components and in enhancing heat stress resistance. When plants are subjected to heat stress, ACL is rapidly degraded within 1 min. Treatments with E64d and MG132 demonstrated that autophagy and the 26S proteasome pathway contribute to this degradation. This dynamic degradation precisely regulates the dual role of ACL in growth and stress responses, indicating a novel mechanism by which plant cells rapidly adapt to environmental changes through the degradation of key enzymes.

柠檬酸对植物细胞的生长至关重要,因为它是多种必需化合物的前体。它还能帮助植物耐受高温。然而,关于柠檬酸如何平衡其促进生长和抵御压力的作用,机制尚不清楚。我们在辣椒(Capsicum annuum)中发现了一个ACLA蛋白,它是ATP柠檬酸裂解酶(ACL)的一个亚基,可以将胞质柠檬酸转化为乙酰辅酶a。沉默ACLA减少了柠檬酸代谢物,导致生长发育迟缓和耐热性下降。相反,ACLA-2过表达增加了乙酰辅酶a代谢物,但降低了柠檬酸水平,这也导致耐热性降低。然而,与野生型相比,施用外源柠檬酸显著提高了acla过表达植株的耐热性。这表明柠檬酸在合成结构组分和增强耐热性方面具有双重作用。当植物受到热胁迫时,ACL在1分钟内迅速降解。用E64d和MG132处理表明,自噬和26S蛋白酶体途径有助于这种降解。这种动态降解精确调控了ACL在生长和胁迫反应中的双重作用,表明植物细胞通过关键酶的降解快速适应环境变化的新机制。
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引用次数: 0
Comprehensive identification of ripening-related RNA-binding proteins in tomatoes using improved plant phase extraction
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-14 DOI: 10.1111/tpj.70215
Yao Lu, Liqun Ma, Ke Cheng, Jinyan Li, Hui Tang, Guoning Zhu, Hongyi Wen, Benzhong Zhu, Daqi Fu, Guiqin Qu, Yunbo Luo, Hongliang Zhu

RNA-binding proteins (RBPs) have emerged as key players in posttranscriptional gene regulation, yet their full scale role in fruit ripening remains to be fully elucidated. However, due to the complex structure and composition of fruit tissue, exploring RBPs in fruits still faces many challenges. Here, we optimized the plant phase extraction method and successfully applied it to tomato fruits for the unbiased excavation of RBPs in fruits, this method were named as “plant phase extraction in tomato fruit” (termed tfPPE). We yielded a comprehensive candidate RNA-binding proteome (RBPome) composed of 230 proteins and disclosed that approximately 66% of them were unconventional RBPs. Validation of the RNA-binding activities of six candidate RBPs unveiled that metabolic enzymes function as moonlighting RBPs. Furthermore, combined with transcriptome analysis, we identified 41 candidate RBPs associated with fruit ripening. Remarkably, we proposed that SlER21 and SlFER1 play significant roles in fruit coloring and ripening process. Taken together, these results demonstrate that tfPPE was an impactful approach for unbiased excavation RBPs in fruits and pave the way for investigating RBP functions in fruit-ripening regulatory network.

rna结合蛋白(rbp)已成为转录后基因调控的关键角色,但它们在果实成熟中的全面作用仍有待充分阐明。然而,由于果实组织结构和组成的复杂性,在果实中探索rbp仍面临许多挑战。本研究对植物相提取方法进行了优化,并成功地将其应用于番茄果实中,对果实中rbp进行了无偏提取,该方法被命名为“番茄果实中植物相提取”(简称tfPPE)。我们获得了一个由230个蛋白质组成的综合候选rna结合蛋白质组(RBPome),并发现其中约66%是非常规RBPs。6种候选rbp的rna结合活性验证表明,代谢酶具有兼职rbp的功能。此外,结合转录组分析,我们鉴定出41个与果实成熟相关的候选rbp。值得注意的是,我们提出SlER21和SlFER1在水果着色和成熟过程中发挥重要作用。综上所述,这些结果表明,tfPPE是一种有效的方法,可以对果实中的RBP进行无偏挖掘,并为研究RBP在果实成熟调控网络中的功能铺平道路。
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引用次数: 0
Functional analysis and molecular characterization of UGT95A2, a specialized glycosyltransferase for flavonoid 3′-O-glycosylation in Carthamus tinctorius L. 红花类黄酮3′- o糖基化专用糖基转移酶UGT95A2的功能分析及分子特征
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-13 DOI: 10.1111/tpj.70213
Ziqing Xi, Yuhang Li, Siyu Liu, Di Wang, Jinxin Guo, Bin Xian, Ke Rao, Chao Chen, Yanni Peng, Yanxun Zhou, Jiang Chen, Jin Pei, Chaoxiang Ren

Safflower, a traditional Chinese medicine, is renowned for its efficacy in promoting blood circulation and alleviating blood stasis. Its principal bioactive components are flavonoids, which predominantly exist as flavonoid glycosides. Glycosyltransferases, as downstream post-modification enzymes in the biosynthesis of these active glycosides, are of considerable research interest. This study leverages transcriptome data from safflower to identify a glycosyltransferase gene, UGT95A2, which was subjected to comprehensive bioinformatics and enzymatic property analyses. In vitro enzymatic assays demonstrated that UGT95A2 catalyzes the glycosylation of flavonoids with an ortho hydroxyl group on the B-ring, generating 3′-OH glycosylated products, such as luteolin, taxifolin, catechin, butin, and eriodictyol. When the ortho hydroxyl groups are located on the A-ring, UGT95A2 instead catalyzes the formation of 6-O-glucosides, as observed for baicalein and 6,7,4′-trihydroxyisoflavone. Validation of in vitro activity showed that overexpression of UGT95A2 enhances the luteolin-3′-O-glucoside content in safflower protoplasts and tobacco leaves. Molecular modeling and site-directed mutagenesis studies indicated that E328 is a critical active site for 3′-hydroxyl glycosylation, while D444 is essential for the enzyme's catalytic activity in generating disaccharides. The identification of the novel glycosyltransferase UGT95A2 provides a foundation for further elucidation of the glycosylation processes of flavonoid glycosides and offers a new biotechnological approach for the production of flavonoid 3′-O-glucosides. This advancement has significant implications for expanding the repertoire of glycosylation enzymes and offers valuable insights for the directed modification of engineering enzymes.

红花是一种传统的中药,以其活血化瘀的功效而闻名。其主要生物活性成分为类黄酮,主要以类黄酮苷形式存在。糖基转移酶作为这些活性糖苷生物合成的下游后修饰酶,引起了相当大的研究兴趣。本研究利用红花的转录组数据鉴定了糖基转移酶基因UGT95A2,并对其进行了综合生物信息学和酶学特性分析。体外酶促实验表明,UGT95A2能催化b环上有邻羟基的黄酮类化合物的糖基化,生成3 ' -OH糖基化产物,如木犀草素、紫杉醇、儿茶素、丁醇和戊二醇。当邻羟基位于a环上时,UGT95A2反而催化形成6- o -糖苷,如黄芩素和6,7,4 ' -三羟基异黄酮。体外活性验证表明,过表达UGT95A2可提高红花原生质体和烟叶中木犀草素-3′- o -糖苷的含量。分子模型和定点诱变研究表明,E328是3′-羟基糖基化的关键活性位点,而D444是该酶催化生成双糖活性所必需的。新型糖基转移酶UGT95A2的鉴定为进一步阐明类黄酮苷的糖基化过程奠定了基础,并为生产类黄酮3′- o -糖苷提供了新的生物技术途径。这一进展对扩大糖基化酶的种类具有重要意义,并为工程酶的定向修饰提供了有价值的见解。
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引用次数: 0
Three ARID proteins involved in chromatin remodeling PEAT complexes are targeted by the Ralstonia solanacearum effector PopP2 and contribute to bacterial wilt disease 三种参与染色质重塑PEAT复合物的ARID蛋白被茄枯菌效应物PopP2靶向,并参与细菌性枯萎病
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-13 DOI: 10.1111/tpj.70205
Léa Monge-Waleryszak, Maxime Girard, Mélanie Carcagno, Raphaël Culerrier, Céline Vicédo, Yves Martinez, Claire Vérin, Yohann Couté, Valérie Pacquit, Laurent Deslandes

Like many gram-negative phytopathogenic bacteria, Ralstonia solanacearum uses a type III secretion system to deliver into host cells a cocktail of effector proteins that can interfere with plant defenses and promote infection. One of these effectors, the nuclear-targeted PopP2 acetyltransferase, was reported to inhibit many defensive WRKY transcription factors through acetylation. To gain a better understanding of the mechanisms by which PopP2 might exert its virulence functions, we searched for other PopP2-interacting partners. Here we report the identification of the Arabidopsis thaliana AT-Rich Interaction Domain protein 3 (ARID3) and its close homologs, ARID2 and ARID4, as additional targets of PopP2. These ARID proteins are core components of the chromatin remodeling PEAT complexes that regulate gene expression through histone (de)acetylation and deubiquitination. In yeast, PopP2 binds the conserved C-terminal part of ARID2/3/4, which contains an α-crystallin domain putatively involved in their homo-oligomerization. ARID2/3/4 behave as substrates of PopP2 acetyltransferase activity, which causes the acetylation of several lysine residues conserved between these three proteins and located near their α-crystallin domain. Interestingly, while PopP2 negatively affects ARID3 and ARID4 self-interactions in planta, it promotes the interaction of ARID3 and ARID4 with PWWP1, another component of PEAT complexes, with which PopP2 can also interact. This study also reveals that disruption of ARID2/3/4 results in reduced growth of R. solanacearum. Overall, our data are consistent with a model in which PopP2 targets several components of PEAT complexes to interfere with their epigenetic regulatory functions and promote Ralstonia infection in Arabidopsis.

像许多革兰氏阴性植物致病菌一样,茄枯菌利用III型分泌系统向宿主细胞输送一种混合的效应蛋白,这种效应蛋白可以干扰植物的防御并促进感染。其中一种效应物,核靶向PopP2乙酰转移酶,据报道通过乙酰化抑制许多防御性WRKY转录因子。为了更好地了解PopP2可能发挥其毒力功能的机制,我们寻找了其他PopP2相互作用的伙伴。本文报道了拟南芥AT-Rich Interaction Domain protein 3 (ARID3)及其同源物ARID2和ARID4作为PopP2的附加靶点的鉴定。这些ARID蛋白是染色质重塑PEAT复合物的核心成分,通过组蛋白(去)乙酰化和去泛素化调节基因表达。在酵母中,PopP2结合了ARID2/3/4的保守c端部分,该部分含有α-结晶蛋白结构域,据推测参与了它们的同质寡聚。ARID2/3/4作为PopP2乙酰转移酶活性的底物,导致这三种蛋白之间位于α-晶体蛋白结构域附近的几个赖氨酸残基乙酰化。有趣的是,虽然PopP2对植物中ARID3和ARID4的自我相互作用产生负面影响,但它促进了ARID3和ARID4与PWWP1的相互作用,PWWP1是PEAT复合物的另一个组分,PopP2也可以与PWWP1相互作用。该研究还表明,ARID2/3/4基因的破坏会导致茄青霉生长下降。总的来说,我们的数据与PopP2靶向PEAT复合物的几个组分干扰其表观遗传调控功能并促进拟南芥Ralstonia感染的模型一致。
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引用次数: 0
Remote precursor elements can modulate RNA induced silencing complex-loading efficiency of miR168 in Arabidopsis 远端前体元件可调节拟南芥中RNA诱导的miR168沉默复合物负载效率
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-13 DOI: 10.1111/tpj.70195
Ágnes Dalmadi, Fabio Miloro, Auwalu Abdu, András Kis, Zoltán Havelda

RNA interference mediated via the action of micro RNAs (miRNAs) plays a pivotal role in developmental and stress response pathways. In the nucleus, plant miRNAs are generated by subsequent enzymatic cuts of the MIRNA precursors, having specific hairpin-like secondary structures, to liberate the miRNA/miRNA* duplex. The mature miRNA strands are then loaded mostly into the ARGONAUTE 1-containing RNA induced silencing complex (RISC) with various efficiencies and trigger the down-regulation of the expression of the target mRNAs, while the miRNA* strands are eliminated. Here we revealed that MIRNA precursor structural elements, not overlapping with the miRNA/miRNA* duplex part, can have an influence on the AGO-loading efficiency of the produced miRNAs. Using transient and transgenic expression studies, we revealed that a chimeric MIR168 precursor hairpin structure containing the stem region of a hvu-MIR171 precursor can induce the enhancement of AGO-loading efficiency of the produced miR168, resulting in increased target down-regulation and in developmental defects of the transgenic plants. This effect was the most pronounced when the orientation of the wild-type miR168/miR168* duplex was inverted in the chimeric precursor, implying the cooperative action of the structural elements. In transient studies, we also showed that precursor elements of MIR168a can reduce AGO-loading efficiency of miR171. The discovery of signals on remote structures of the miRNA precursor suggests that miRNA biogenesis and AGO-loading can be spatially more connected in the nucleus and/or signalization events mediated by these non-duplex structural features during miRNA biogenesis can determine the fate of the miRNA/miRNA* duplexes in separated AGO-loading processes.

通过微RNA (miRNAs)介导的RNA干扰在发育和应激反应途径中起着关键作用。在细胞核中,植物MIRNA是通过酶切MIRNA前体产生的,具有特定的发夹状二级结构,以释放MIRNA / MIRNA *双链。然后将成熟的miRNA链以不同的效率加载到含有ARGONAUTE 1的RNA诱导沉默复合体(RISC)中,并触发靶mrna的表达下调,而miRNA*链则被消除。本研究发现,不与MIRNA / MIRNA *双工部分重叠的MIRNA前体结构元件会影响生成的MIRNA的ago负载效率。通过瞬时表达和转基因表达研究,我们发现含有hvu-MIR171前体茎段的嵌合MIR168前体发夹结构可以诱导产生的MIR168的ago负载效率提高,从而导致靶向下调的增加和转基因植株的发育缺陷。当野生型miR168/miR168*双链在嵌合前体中取向反转时,这种效应最为明显,这意味着结构元件的协同作用。在瞬态研究中,我们还发现MIR168a的前体元件可以降低miR171的ago加载效率。miRNA前体的远端结构信号的发现表明,miRNA的生物发生和ago的装载在细胞核中可能在空间上有更多的联系,并且/或miRNA生物发生过程中由这些非双工结构特征介导的信号事件可以决定分离的ago装载过程中miRNA/miRNA*双工的命运。
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引用次数: 0
Shining light on Arabidopsis regulatory networks integrating nitrogen use and photosynthesis 揭示拟南芥氮素利用与光合作用的调控网络
IF 6.2 1区 生物学 Q1 PLANT SCIENCES Pub Date : 2025-05-13 DOI: 10.1111/tpj.70211
Kithmee de Silva, Camila Coelho, Jenny Gao, Matthew D. Brooks

Nitrogen and light availability are well-known to influence photosynthesis, having both individual and synergistic effects. However, the regulatory interactions between these signaling pathways, especially the transcription factors (TFs) that perceive and integrate these cues, remain to be elucidated. Arabidopsis grown in a matrix of nitrogen and light treatments exhibited distinct physiological and transcriptomic responses. Notably, the effect of nitrogen dose on biomass, nitrogen use efficiency, carbon-to-nitrogen ratio, and gene expression was highly dependent on light intensity. Genes differentially expressed across the treatments were enriched for photosynthetic processes, including the pentose-phosphate cycle, light-harvesting, and chlorophyll biosynthesis. TFs coordinating photosynthesis, carbon-to-nitrogen balance, and nitrogen uptake were identified based on motif enrichment, validated binding data, and gene regulatory network analysis. Dynamic light-by-nitrogen responses were found for TFs previously linked to either nitrogen or light signaling, which now emerge as regulatory hubs that integrate these signals. Among these TFs, we identified bZIP and MYB-related family transcription factors as pivotal players in harmonizing photosynthesis, nitrogen assimilation, and light responses. The transcription factors unveiled in this study have the potential to unlock new strategies for optimizing photosynthetic activity and nutrient-use efficiency in plants.

众所周知,氮和光有效性影响光合作用,具有单独和协同效应。然而,这些信号通路之间的调控相互作用,特别是感知和整合这些信号的转录因子(tf),仍有待阐明。在氮和光基质下生长的拟南芥表现出不同的生理和转录组反应。氮剂量对生物量、氮利用效率、碳氮比和基因表达的影响高度依赖于光强。不同处理间差异表达的基因在光合过程中被富集,包括戊糖-磷酸盐循环、光收集和叶绿素生物合成。通过基序富集、已验证的结合数据和基因调控网络分析,确定了协调光合作用、碳氮平衡和氮吸收的TFs。研究人员发现,以前与氮或光信号相关的tf存在动态光氮响应,而现在这些tf作为整合这些信号的调控中心出现。在这些tf中,我们发现bZIP和myb相关家族转录因子在协调光合作用、氮同化和光响应中起关键作用。本研究揭示的转录因子有可能为优化植物光合活性和养分利用效率提供新的策略。
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引用次数: 0
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The Plant Journal
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