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Optimization of Affibody Affinity to Improve Distribution in Tumor Models 优化词缀亲和力以改善肿瘤模型的分布
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-09-17 DOI: 10.1021/acs.biomac.6c01111
Bryce M. Bower, Gabrielle M. Ho, Sven A. Saemundsson, Andrew P. Goodwin, Jennifer N. Cha
Poor distribution is often a limiting factor when using affinity targeted treatments. High affinity creates a barrier to transport because proteins cannot diffuse throughout the tissue while bound to the cell surface. Lowering the affinity can help with transport throughout a tumor but can also result in a loss of total delivery and specificity for the target. In this research, we used point mutations to create affibodies with a range of different affinities for epidermal growth factor receptor (EGFR) and measured their penetration through tumor spheroids. Mutants in the range of ∼7–12 nM K D were able to distribute more evenly throughout 3D tumor spheroids without losing total accumulation or receptor specificity. Lower affinity mutants showed both low target specificity and accumulation in 3D tumor spheroids. This work shows the effects of affinity on distribution and how slightly reducing binding affinity can improve transport.
Poor distribution is often a limiting factor when using affinity targeted treatments. High affinity creates a barrier to transport because proteins cannot diffuse throughout the tissue while bound to the cell surface. Lowering the affinity can help with transport throughout a tumor but can also result in a loss of total delivery and specificity for the target. In this research, we used point mutations to create affibodies with a range of different affinities for epidermal growth factor receptor (EGFR) and measured their penetration through tumor spheroids. Mutants in the range of ∼7–12 nM K D were able to distribute more evenly throughout 3D tumor spheroids without losing total accumulation or receptor specificity. Lower affinity mutants showed both low target specificity and accumulation in 3D tumor spheroids. This work shows the effects of affinity on distribution and how slightly reducing binding affinity can improve transport.
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当使用亲和力靶向治疗时,不良分布往往是一个限制因素。高亲和力产生了运输障碍,因为蛋白质在结合到细胞表面时不能扩散到整个组织。降低亲和力有助于整个肿瘤的转运,但也可能导致靶蛋白的总递送和特异性的丧失。在这项研究中,我们使用点突变来创建具有一系列不同亲和力的表皮生长因子受体(EGFR)的粘附体,并测量它们在肿瘤球体中的渗透。在~ 7-12 nM KD范围内的突变体能够更均匀地分布在整个三维肿瘤球体中,而不会失去总积累或受体特异性。低亲和力突变体在三维肿瘤球体中表现出低靶标特异性和积累。这项工作显示了亲和性对分布的影响,以及轻微降低结合亲和性如何改善转运。
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引用次数: 0
Robust Silk Fibroin Aerogel Fibers Designed by Dual Cross-Linking for Thermal Insulation 采用双交联设计的坚固丝素气凝胶隔热纤维
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-28 DOI: 10.1021/acs.biomac.6c01321
Qianqian Niu, Xianghua Li, Yaopeng Zhang
Silk fibroin (SF) is ideal for aerogel fibers owing to its abundance, biodegradability, biocompatibility, and structural tunability, yet pristine SF aerogel fibers have insufficient performance for practical use. Here, a dual cross-linking strategy combining enzymatic cross-linking and Zn2+ coordination was used, leveraging their noncompetitive inhibition to produce SF aerogel fibers featuring low density, high strength, and outstanding thermal insulation. SF concentration governs the pore architecture formed by enzymatic cross-linking. Zn2+ ions complex with SF molecular chains, creating a more intricate three-dimensional network alongside the covalent bonds from enzymatic cross-linking. At 0.1 M Zn2+, the dual-cross-linked SF aerogel fibers achieve a maximum toughness of ∼0.31 MJ m–3 and optimal thermal insulation with ∼2.9 °C. Woven fabrics outperform commercial nylon, cotton and wool in thermal insulation. Superior performance arises from air-trapping pores suppressing conduction/convection and infrared-reflective pore walls reducing radiative loss. This work provides a guideline for designing biomass aerogel fibers.
Silk fibroin (SF) is ideal for aerogel fibers owing to its abundance, biodegradability, biocompatibility, and structural tunability, yet pristine SF aerogel fibers have insufficient performance for practical use. Here, a dual cross-linking strategy combining enzymatic cross-linking and Zn2+ coordination was used, leveraging their noncompetitive inhibition to produce SF aerogel fibers featuring low density, high strength, and outstanding thermal insulation. SF concentration governs the pore architecture formed by enzymatic cross-linking. Zn2+ ions complex with SF molecular chains, creating a more intricate three-dimensional network alongside the covalent bonds from enzymatic cross-linking. At 0.1 M Zn2+, the dual-cross-linked SF aerogel fibers achieve a maximum toughness of ∼0.31 MJ m–3 and optimal thermal insulation with ∼2.9 °C. Woven fabrics outperform commercial nylon, cotton and wool in thermal insulation. Superior performance arises from air-trapping pores suppressing conduction/convection and infrared-reflective pore walls reducing radiative loss. This work provides a guideline for designing biomass aerogel fibers.
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丝素(SF)是理想的气凝胶纤维,因为它的丰度,可生物降解性,生物相容性和结构可调性,但原始的SF气凝胶纤维在实际应用中性能不足。本研究采用双交联策略,结合酶交联和Zn2+配位,利用它们的非竞争性抑制作用,生产出具有低密度、高强度和出色隔热性能的SF气凝胶纤维。SF浓度控制酶交联形成的孔结构。Zn2+离子与SF分子链配合,与酶交联形成的共价键形成更复杂的三维网络。在0.1 M Zn2+下,双交联SFaerogel纤维的最大韧性为~ 0.31 MJ - 3,并且在~ 2.9°C下具有最佳的隔热性能。机织织物的隔热性能优于商用尼龙、棉和羊毛。优异的性能源于空气捕获孔抑制传导/对流和红外反射孔壁减少辐射损失。这项工作为生物气凝胶纤维的设计提供了指导。
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引用次数: 0
Dual Release of Antibiotics with Additive Effect from Cleavable Hydrogels Based on Amino/Thiol–Yne Click Chemistry 基于氨基/巯基键合化学的可切割水凝胶加性双重释放抗生素
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-28 DOI: 10.1021/acs.biomac.6c01230
Sara Bescós-Ramo, Cristina Yus, Manuel Arruebo, Milagros Piñol, Luis Oriol
Dual-antibiotic loaded poly­(ethylene glycol) (PEG)-based hydrogels were developed as antimicrobial wound dressings combining covalent and physical antibiotic incorporation. Hydrogels were prepared through amino-yne click conjugation of gentamicin sulfate (Gs) and thiol-yne cross-linking, followed by ciprofloxacin (CPX) loading via swelling-diffusion. The materials exhibited tunable gelation time, swelling capacity, and drug release profiles depending on thiol content. A dual-release mechanism was achieved, consisting of an initial burst release of CPX followed by a sustained, pH-responsive release of conjugated Gs through acid cleavage of β-aminoacrylate linkages. The hydrogels showed effective wide spectrum antibacterial activity against methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa, while cytotoxicity studies confirmed cytocompatibility at bactericidal concentrations. The results support the potential of these hydrogels as safe and effective dual-antibiotic wound dressings, allowing for the immediate elimination of invading bacteria after wounding (burst release), while maintaining long-term antibiotic release to minimize reinfection risk.
Dual-antibiotic loaded poly­(ethylene glycol) (PEG)-based hydrogels were developed as antimicrobial wound dressings combining covalent and physical antibiotic incorporation. Hydrogels were prepared through amino-yne click conjugation of gentamicin sulfate (Gs) and thiol-yne cross-linking, followed by ciprofloxacin (CPX) loading via swelling-diffusion. The materials exhibited tunable gelation time, swelling capacity, and drug release profiles depending on thiol content. A dual-release mechanism was achieved, consisting of an initial burst release of CPX followed by a sustained, pH-responsive release of conjugated Gs through acid cleavage of β-aminoacrylate linkages. The hydrogels showed effective wide spectrum antibacterial activity against methicillin-resistant Staphylococcus aureus and Pseudomonas aeruginosa, while cytotoxicity studies confirmed cytocompatibility at bactericidal concentrations. The results support the potential of these hydrogels as safe and effective dual-antibiotic wound dressings, allowing for the immediate elimination of invading bacteria after wounding (burst release), while maintaining long-term antibiotic release to minimize reinfection risk.
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采用共价和物理抗生素结合的方法,研制了双抗生素负载聚乙二醇(PEG)基水凝胶作为抗菌伤口敷料。通过硫酸庆大霉素(Gs)的氨基-炔键偶联和巯基炔交联制备水凝胶,然后通过膨胀-扩散加载环丙沙星(CPX)。该材料表现出可调节的凝胶时间,膨胀能力和药物释放谱取决于硫醇含量。实现了双重释放机制,包括cpx的初始爆发释放,然后通过酸裂解β-氨基丙烯酸酯键持续的ph响应释放共轭gs。水凝胶对耐甲氧西林金黄色葡萄球菌和铜绿假单胞菌表现出有效的广谱抗菌活性,而细胞毒性研究证实了在杀菌浓度下的细胞相容性。这些结果支持水凝胶作为安全有效的双抗生素伤口敷料的潜力,允许在受伤后立即消除入侵细菌(爆裂释放),同时保持长期的抗生素释放,以尽量减少再感染的风险。
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引用次数: 0
Cutinase Adsorption to Polyester Surfaces Modulates Dissolved Oligomer Speciation during Enzymatic Depolymerization 在酶解聚过程中,角质酶对聚酯表面的吸附调节溶解的低聚物形态。
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-12 DOI: 10.1021/acs.biomac.6c00362
Marc J. Foster, Parker J. McClain, Annabella S. Wardle, Natalie D. Mamrol, Elijah E. Martin, Glen Andrew D. de Vera, Bradley D. Olsen, Desirée L. Plata
<div><div>Surface-active enzymes, such as cutinases, initiate depolymerization of polyester plastics by adsorbing to the polymer surface. The influence of enzyme adsorption on the composition of dissolved degradation products remains underexplored. This study investigated how adsorption of a cutinase from Humicola insolens (HiC) to polyester surfaces modulated dissolved oligomer speciation during depolymerization of poly­(butylene succinate) (PBS) and poly­(butylene sebacate-co-terephthalate) (PBSeT). Inverse and conventional Michaelis–Menten kinetics were used to determine attack site densities (Γ<sub>attack</sub>) and catalytic turnover (<em>k</em> <sub>cat</sub>). HiC exhibited comparable Γ<sub>attack</sub> for PBS and PBSeT (0.31 ± 0.06 and 0.51 ± 0.12 μmol<sub>enzyme</sub> g<sub>plastic</sub> <sup>–1</sup>, respectively), while the <em>k</em> <sub>cat</sub> was 2 orders of magnitude higher for PBS (40.8 ± 8.4 s<sup>–1</sup> vs 0.13 ± 0.02 s<sup>–1</sup>). Liquid chromatography coupled to mass spectrometry revealed accumulation of larger oligomers when the enzyme-to-plastic ratios were below the Γ<sub>attack</sub>, indicating that relative free protein levels influence the composition of dissolved products during plastic depolymerization.</div></div><div>Surface-active enzymes, such as cutinases, initiate depolymerization of polyester plastics by adsorbing to the polymer surface. The influence of enzyme adsorption on the composition of dissolved degradation products remains underexplored. This study investigated how adsorption of a cutinase from Humicola insolens (HiC) to polyester surfaces modulated dissolved oligomer speciation during depolymerization of poly­(butylene succinate) (PBS) and poly­(butylene sebacate-co-terephthalate) (PBSeT). Inverse and conventional Michaelis–Menten kinetics were used to determine attack site densities (Γ<sub>attack</sub>) and catalytic turnover (<em>k</em> <sub>cat</sub>). HiC exhibited comparable Γ<sub>attack</sub> for PBS and PBSeT (0.31 ± 0.06 and 0.51 ± 0.12 μmol<sub>enzyme</sub> g<sub>plastic</sub> <sup>–1</sup>, respectively), while the <em>k</em> <sub>cat</sub> was 2 orders of magnitude higher for PBS (40.8 ± 8.4 s<sup>–1</sup> vs 0.13 ± 0.02 s<sup>–1</sup>). Liquid chromatography coupled to mass spectrometry revealed accumulation of larger oligomers when the enzyme-to-plastic ratios were below the Γ<sub>attack</sub>, indicating that relative free protein levels influence the composition of dissolved products during plastic depolymerization.</div><div><div><span><figure><span><img><ol><li><span><span>Download: <span>Download high-res image (114KB)</span></span></span></li><li><span><span>Download: <span>Download full-size image</span></span></span></li></ol></span></figure></span></div></div><div><span><figure><span><img><ol><li><span><span>Download: <span>Download high-res image (114KB)</span></span></span></li><li><span><span>Download: <span>Download full-size image</span></span></span></li></ol></s
表面活性酶,如角质酶,通过吸附到聚合物表面引发聚酯塑料的解聚。酶吸附对溶解降解产物组成的影响尚不清楚。本研究研究了在聚琥珀酸丁二酯(PBS)和聚癸二酸丁二酯(PBSeT)解聚过程中,从Humicola insolens (HiC)上吸附的角质酶如何调节溶解的低聚物形态。逆动力学和常规Michaelis-Menten动力学用于测定攻击位点密度(Γattack)和催化转化率(kcat)。PBS和PBSeT的HiC值Γattack相当(分别为0.31±0.06和0.51±0.12 μmolenzyme plastic-1),而PBS的kcat值高出2个数量级(40.8±8.4 s-1 vs 0.13±0.02 s-1)。液相色谱联用质谱分析显示,当酶与塑料的比例低于Γattack时,较大的低聚物会积累,这表明在塑料解聚过程中,相对游离蛋白水平会影响溶解产物的组成。
{"title":"Cutinase Adsorption to Polyester Surfaces Modulates Dissolved Oligomer Speciation during Enzymatic Depolymerization","authors":"Marc J. Foster,&nbsp;Parker J. McClain,&nbsp;Annabella S. Wardle,&nbsp;Natalie D. Mamrol,&nbsp;Elijah E. Martin,&nbsp;Glen Andrew D. de Vera,&nbsp;Bradley D. Olsen,&nbsp;Desirée L. Plata","doi":"10.1021/acs.biomac.6c00362","DOIUrl":"10.1021/acs.biomac.6c00362","url":null,"abstract":"&lt;div&gt;&lt;div&gt;Surface-active enzymes, such as cutinases, initiate depolymerization of polyester plastics by adsorbing to the polymer surface. The influence of enzyme adsorption on the composition of dissolved degradation products remains underexplored. This study investigated how adsorption of a cutinase from Humicola insolens (HiC) to polyester surfaces modulated dissolved oligomer speciation during depolymerization of poly­(butylene succinate) (PBS) and poly­(butylene sebacate-co-terephthalate) (PBSeT). Inverse and conventional Michaelis–Menten kinetics were used to determine attack site densities (Γ&lt;sub&gt;attack&lt;/sub&gt;) and catalytic turnover (&lt;em&gt;k&lt;/em&gt; &lt;sub&gt;cat&lt;/sub&gt;). HiC exhibited comparable Γ&lt;sub&gt;attack&lt;/sub&gt; for PBS and PBSeT (0.31 ± 0.06 and 0.51 ± 0.12 μmol&lt;sub&gt;enzyme&lt;/sub&gt; g&lt;sub&gt;plastic&lt;/sub&gt; &lt;sup&gt;–1&lt;/sup&gt;, respectively), while the &lt;em&gt;k&lt;/em&gt; &lt;sub&gt;cat&lt;/sub&gt; was 2 orders of magnitude higher for PBS (40.8 ± 8.4 s&lt;sup&gt;–1&lt;/sup&gt; vs 0.13 ± 0.02 s&lt;sup&gt;–1&lt;/sup&gt;). Liquid chromatography coupled to mass spectrometry revealed accumulation of larger oligomers when the enzyme-to-plastic ratios were below the Γ&lt;sub&gt;attack&lt;/sub&gt;, indicating that relative free protein levels influence the composition of dissolved products during plastic depolymerization.&lt;/div&gt;&lt;/div&gt;&lt;div&gt;Surface-active enzymes, such as cutinases, initiate depolymerization of polyester plastics by adsorbing to the polymer surface. The influence of enzyme adsorption on the composition of dissolved degradation products remains underexplored. This study investigated how adsorption of a cutinase from Humicola insolens (HiC) to polyester surfaces modulated dissolved oligomer speciation during depolymerization of poly­(butylene succinate) (PBS) and poly­(butylene sebacate-co-terephthalate) (PBSeT). Inverse and conventional Michaelis–Menten kinetics were used to determine attack site densities (Γ&lt;sub&gt;attack&lt;/sub&gt;) and catalytic turnover (&lt;em&gt;k&lt;/em&gt; &lt;sub&gt;cat&lt;/sub&gt;). HiC exhibited comparable Γ&lt;sub&gt;attack&lt;/sub&gt; for PBS and PBSeT (0.31 ± 0.06 and 0.51 ± 0.12 μmol&lt;sub&gt;enzyme&lt;/sub&gt; g&lt;sub&gt;plastic&lt;/sub&gt; &lt;sup&gt;–1&lt;/sup&gt;, respectively), while the &lt;em&gt;k&lt;/em&gt; &lt;sub&gt;cat&lt;/sub&gt; was 2 orders of magnitude higher for PBS (40.8 ± 8.4 s&lt;sup&gt;–1&lt;/sup&gt; vs 0.13 ± 0.02 s&lt;sup&gt;–1&lt;/sup&gt;). Liquid chromatography coupled to mass spectrometry revealed accumulation of larger oligomers when the enzyme-to-plastic ratios were below the Γ&lt;sub&gt;attack&lt;/sub&gt;, indicating that relative free protein levels influence the composition of dissolved products during plastic depolymerization.&lt;/div&gt;&lt;div&gt;&lt;div&gt;&lt;span&gt;&lt;figure&gt;&lt;span&gt;&lt;img&gt;&lt;ol&gt;&lt;li&gt;&lt;span&gt;&lt;span&gt;Download: &lt;span&gt;Download high-res image (114KB)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span&gt;&lt;span&gt;Download: &lt;span&gt;Download full-size image&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ol&gt;&lt;/span&gt;&lt;/figure&gt;&lt;/span&gt;&lt;/div&gt;&lt;/div&gt;&lt;div&gt;&lt;span&gt;&lt;figure&gt;&lt;span&gt;&lt;img&gt;&lt;ol&gt;&lt;li&gt;&lt;span&gt;&lt;span&gt;Download: &lt;span&gt;Download high-res image (114KB)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;li&gt;&lt;span&gt;&lt;span&gt;Download: &lt;span&gt;Download full-size image&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/li&gt;&lt;/ol&gt;&lt;/s","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":"27 9","pages":"Pages 5908-5919"},"PeriodicalIF":5.9,"publicationDate":"2026-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148395480","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effective Reduction of Anti-PEG Antibody Recognition via PEG Copolymers with Ethyl Glycidyl Ether and Isopropyl Glycidyl Ether PEG -乙基缩水甘油醚和异丙基缩水甘油醚共聚物有效降低抗PEG抗体识别
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-12 DOI: 10.1021/acs.biomac.6c01182
Verena Müller, Julian Schmidt, Rebecca Matthes, Philip Dreier, Sandra Schüttner, Matthias Bros, Holger Frey
Anti-PEG antibodies (APAs) lead to accelerated blood clearance of PEGylated drugs and nanocarriers. Randomized PEG (rPEG) reduces APA recognition by randomly incorporating glycidyl methyl ether in PEG. Extending this concept, statistical copolymerization of ethylene oxide with ethyl glycidyl ether (EGE) or isopropyl glycidyl ether (iPGE) was investigated. Copolymers of EO with 13–28 mol % EGE or 6–20 mol % iPGE showed low dispersity (Đ ≤ 1.09). Via online-NMR monitoring, reactivity ratios in DMSO were r EO = 1.39 and r EGE = 0.72 for P­(EO-co-EGE) and r EO = 1.35 and r iPGE = 0.74 for P­(EO-co-iPGE). All copolymers were soluble in PBS buffer at physiological temperatures and noncytotoxic, except for 20% iPGE content, shown by cell viability and immunostimulatory effects on murine splenocytes. All copolymers exhibit significantly reduced APA recognition (ELISA) with stronger effects for the sterically demanding iPGE. The findings highlight mP­(EO-co-EGE) and mP­(EO-co-iPGE) as promising PEG alternatives for nanomedicine and bioconjugation.
Anti-PEG antibodies (APAs) lead to accelerated blood clearance of PEGylated drugs and nanocarriers. Randomized PEG (rPEG) reduces APA recognition by randomly incorporating glycidyl methyl ether in PEG. Extending this concept, statistical copolymerization of ethylene oxide with ethyl glycidyl ether (EGE) or isopropyl glycidyl ether (iPGE) was investigated. Copolymers of EO with 13–28 mol % EGE or 6–20 mol % iPGE showed low dispersity (Đ ≤ 1.09). Via online-NMR monitoring, reactivity ratios in DMSO were r EO = 1.39 and r EGE = 0.72 for P­(EO-co-EGE) and r EO = 1.35 and r iPGE = 0.74 for P­(EO-co-iPGE). All copolymers were soluble in PBS buffer at physiological temperatures and noncytotoxic, except for 20% iPGE content, shown by cell viability and immunostimulatory effects on murine splenocytes. All copolymers exhibit significantly reduced APA recognition (ELISA) with stronger effects for the sterically demanding iPGE. The findings highlight mP­(EO-co-EGE) and mP­(EO-co-iPGE) as promising PEG alternatives for nanomedicine and bioconjugation.
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抗聚乙二醇抗体(APAs)可加速聚乙二醇化药物和纳米载体的血液清除。随机PEG (rPEG)通过在PEG中随机加入缩水甘油酯甲基醚来降低apa识别。扩展这一概念,研究了环氧乙烷与缩水甘油酯醚(EGE)或异丙基缩水甘油酯醚(iPGE)的统计共聚。EO与13-28mol % EGE或6-20 mol % iPGE的共聚物分散性较低(Đ≤1.09)。通过在线核磁共振监测,P(EO-co-EGE)在DMSO中的反应性比rEO = 1.39, rEGE = 0.72, P(EO-co-iPGE)的反应性比rEO = 1.35, riPGE = 0.74。所有共聚物均可在生理温度下溶于PBS缓冲液中,除ipg含量为20%外,均无细胞毒性,这可以通过对小鼠脾细胞的细胞活力和免疫刺激作用来证明。所有共聚物均表现出明显降低的APArecognition (ELISA),对空间要求较高的iPGE有更强的作用。这些发现突出了mP(EO-co-EGE)和mP(EO-co-iPGE)作为纳米医学和生物偶联的有前途的PEG替代品。
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引用次数: 0
Heavy Metal Chelation and Bioprotective Activity of Dextran-DOTA Macromolecular Conjugate 右旋糖酐- dota大分子缀合物的重金属螯合及生物保护活性
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-12 DOI: 10.1021/acs.biomac.6c00847
Sebastian Guajardo, Hunter Wood, Chenyun Deng, Neo Alpha, Stefanie A. Sydlik
Widespread exposure and bioaccumulation of toxic heavy metals have increased the incidence of metal poisoning, particularly in children. Although chelation therapy can remove toxic metals, current drugs are limited by toxicity and side effects, restricting treatment to severe cases. We report the synthesis of a water-soluble macromolecular chelator through esterification of dextran with tetraxetan (DOTA) to create a safer systemic chelator. Chemical characterization confirmed successful conjugation with a high degree of substitution. The resulting Dex-DOTA conjugate exhibited enhanced affinity for lead and cadmium, demonstrating the advantages of macromolecular architecture for metal selectivity and retention. Dex-DOTA also showed excellent colloidal stability, no cytotoxicity, and improved cell survival following metal exposure. In C. elegans, the conjugate was nontoxic and mitigated heavy metal-induced toxicity. These findings establish Dex-DOTA as a stable, selective, and biocompatible chelator with strong potential for safer systemic treatment of heavy metal poisoning.
Widespread exposure and bioaccumulation of toxic heavy metals have increased the incidence of metal poisoning, particularly in children. Although chelation therapy can remove toxic metals, current drugs are limited by toxicity and side effects, restricting treatment to severe cases. We report the synthesis of a water-soluble macromolecular chelator through esterification of dextran with tetraxetan (DOTA) to create a safer systemic chelator. Chemical characterization confirmed successful conjugation with a high degree of substitution. The resulting Dex-DOTA conjugate exhibited enhanced affinity for lead and cadmium, demonstrating the advantages of macromolecular architecture for metal selectivity and retention. Dex-DOTA also showed excellent colloidal stability, no cytotoxicity, and improved cell survival following metal exposure. In C. elegans, the conjugate was nontoxic and mitigated heavy metal-induced toxicity. These findings establish Dex-DOTA as a stable, selective, and biocompatible chelator with strong potential for safer systemic treatment of heavy metal poisoning.
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有毒重金属的广泛接触和生物积累增加了金属中毒的发生率,特别是在儿童中。虽然螯合治疗可以去除有毒金属,但目前的药物受毒性和副作用的限制,限制了对重症病例的治疗。我们报道了一种水溶性大分子螯合剂的合成,通过右旋糖酐与四乙基糖(DOTA)的酯化反应来创造一种更安全的全身螯合剂。化学表征证实了高取代度的成功偶联。所得到的dex - dota偶联物对铅和镉的亲和力增强,证明了大分子结构在金属选择性和保留方面的优势。Dex-DOTA还显示出优异的胶体稳定性,无细胞毒性,并改善金属暴露后的细胞存活率。在秀丽隐杆线虫中,该偶联物无毒,减轻了重金属诱导的毒性。这些发现表明Dex-DOTA是一种稳定、选择性和生物相容性的螯合剂,具有更安全的全身重金属中毒治疗的强大潜力。
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引用次数: 0
Elastin-Based Hydrogel for Selective Adsorption of Rare Earth Elements 弹性蛋白基水凝胶对稀土元素的选择性吸附
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-12 DOI: 10.1021/acs.biomac.5c02269
Inseok Chae, Butaek Lim, Dylan S. Chang, Fiona M. Doyle, Seung-Wuk Lee
The sustainable separation of rare earth elements (REEs) from complex mixtures remains a critical technological challenge. Biomaterials offer a promising route, but their deployment has been hindered by their limited stability and efficiency. Here, we report a robust elastin-based hydrogel incorporating the lanthanide-binding protein, lanmodulin, for efficient and selective REE separation. A fusion protein of elastin-like polypeptide and lanmodulin was synthesized and cross-linked with four-arm polyethylene glycol to form a porous network that enhances REE binding and release in aqueous environments. The protein-cross-linked hydrogel exhibits high internal selectivity for lanthanide ions over multiple regeneration cycles. When implemented as an ion exchange chromatography adsorbent, it enables the selective fractionation of lanthanides from allanite ore, a complex natural source containing abundant REEs and non-REEs. The combination of excellent selectivity and operational stability positions this protein hydrogel as a sustainable platform for eco-friendly REE separation and purification.
The sustainable separation of rare earth elements (REEs) from complex mixtures remains a critical technological challenge. Biomaterials offer a promising route, but their deployment has been hindered by their limited stability and efficiency. Here, we report a robust elastin-based hydrogel incorporating the lanthanide-binding protein, lanmodulin, for efficient and selective REE separation. A fusion protein of elastin-like polypeptide and lanmodulin was synthesized and cross-linked with four-arm polyethylene glycol to form a porous network that enhances REE binding and release in aqueous environments. The protein-cross-linked hydrogel exhibits high internal selectivity for lanthanide ions over multiple regeneration cycles. When implemented as an ion exchange chromatography adsorbent, it enables the selective fractionation of lanthanides from allanite ore, a complex natural source containing abundant REEs and non-REEs. The combination of excellent selectivity and operational stability positions this protein hydrogel as a sustainable platform for eco-friendly REE separation and purification.
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从复杂混合物中可持续分离稀土元素(ree)仍然是一个关键的技术挑战。生物材料也提供了一条很有前途的途径,但其有限的稳定性和效率阻碍了它们的应用。在这里,我们报告了一种结合镧系结合蛋白(lanmodulin)的弹性蛋白基水凝胶,用于有效和选择性地分离稀土元素。合成了弹性蛋白样多肽和lanmodulin的融合蛋白,并与四臂聚乙二醇交联形成多孔网络,促进稀土在水环境中的结合和释放。蛋白质交联水凝胶在多次再生循环中对镧系离子表现出很高的内部选择性。当作为离子交换色谱吸附剂时,它可以从含丰富稀土和非稀土的复杂天然来源allanite矿石中选择性分离镧系元素。优异的选择性和操作稳定性使这种蛋白质水凝胶成为环保稀土分离和纯化的可持续平台。
{"title":"Elastin-Based Hydrogel for Selective Adsorption of Rare Earth Elements","authors":"Inseok Chae,&nbsp;Butaek Lim,&nbsp;Dylan S. Chang,&nbsp;Fiona M. Doyle,&nbsp;Seung-Wuk Lee","doi":"10.1021/acs.biomac.5c02269","DOIUrl":"10.1021/acs.biomac.5c02269","url":null,"abstract":"<div><div>The sustainable separation of rare earth elements (REEs) from complex mixtures remains a critical technological challenge. Biomaterials offer a promising route, but their deployment has been hindered by their limited stability and efficiency. Here, we report a robust elastin-based hydrogel incorporating the lanthanide-binding protein, lanmodulin, for efficient and selective REE separation. A fusion protein of elastin-like polypeptide and lanmodulin was synthesized and cross-linked with four-arm polyethylene glycol to form a porous network that enhances REE binding and release in aqueous environments. The protein-cross-linked hydrogel exhibits high internal selectivity for lanthanide ions over multiple regeneration cycles. When implemented as an ion exchange chromatography adsorbent, it enables the selective fractionation of lanthanides from allanite ore, a complex natural source containing abundant REEs and non-REEs. The combination of excellent selectivity and operational stability positions this protein hydrogel as a sustainable platform for eco-friendly REE separation and purification.</div></div><div>The sustainable separation of rare earth elements (REEs) from complex mixtures remains a critical technological challenge. Biomaterials offer a promising route, but their deployment has been hindered by their limited stability and efficiency. Here, we report a robust elastin-based hydrogel incorporating the lanthanide-binding protein, lanmodulin, for efficient and selective REE separation. A fusion protein of elastin-like polypeptide and lanmodulin was synthesized and cross-linked with four-arm polyethylene glycol to form a porous network that enhances REE binding and release in aqueous environments. The protein-cross-linked hydrogel exhibits high internal selectivity for lanthanide ions over multiple regeneration cycles. When implemented as an ion exchange chromatography adsorbent, it enables the selective fractionation of lanthanides from allanite ore, a complex natural source containing abundant REEs and non-REEs. The combination of excellent selectivity and operational stability positions this protein hydrogel as a sustainable platform for eco-friendly REE separation and purification.</div><div><div><span><figure><span><img><ol><li><span><span>Download: <span>Download high-res image (149KB)</span></span></span></li><li><span><span>Download: <span>Download full-size image</span></span></span></li></ol></span></figure></span></div></div><div><span><figure><span><img><ol><li><span><span>Download: <span>Download high-res image (149KB)</span></span></span></li><li><span><span>Download: <span>Download full-size image</span></span></span></li></ol></span></figure></span></div>","PeriodicalId":30,"journal":{"name":"Biomacromolecules","volume":"27 9","pages":"Pages 5878-5886"},"PeriodicalIF":5.9,"publicationDate":"2026-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"148958026","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Polypeptide Sequence Effects on Virus Thermostability in Complex Coacervate Formulations 多肽序列对复杂凝聚制剂病毒热稳定性的影响
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-28 DOI: 10.1021/acs.biomac.6c00747
Pratik U. Joshi, Claire Decker, Arvind Sathyavageeswaran, Xianci Zeng, Hong Liu, Milad Kheirvari, Ebenezer Tumban, Lynn Manchester, Idris Tohidian, Eduardo Barbieri, Sarah L. Perry, Caryn L. Heldt
<div><div>Current vaccine formulations heavily rely on cold chains to avoid degradation during transportation and storage. Vaccines typically degrade when exposed to temperatures outside the 2–8 °C range, leading to waste and logistical challenges, particularly in rural areas. This study investigates the ability of poly­(lysine)- and poly­(glutamate)-based peptide coacervates to improve the thermal stability of porcine parvovirus (PPV), a model nonenveloped viral vaccine. We hypothesized that both the length and specific amino acid sequence of the peptides forming the coacervates would influence the stability of PPV. Long polypeptides (400–800 mers) provided significant protection, slowing PPV inactivation at 60 °C for up to 7 days by as much as 4 logs (10,000-fold), whereas shorter 48-mer homopolypeptides offered limited stability. Modifying peptide sequences revealed that glutamate-glycine block copolypeptides at larger block sizes improved thermostability, while incorporating alanine residues into lysine block copolypeptides improved stabilization beyond that achieved with long homopolypeptides. The addition of sucrose in the formulations further improved thermostability, while trehalose showed minimal benefit. Although coacervation did not have a significant impact on viral infectivity, <em>in vivo</em> studies leveraging an alum adjuvant demonstrated that PPV released from a coacervate yielded lower antibody responses compared to native virus, indicating the presence of complicating interactions that potentially masked the immunogenic epitopes on the capsid surface or decreased the effectiveness of the adjuvant. Overall, this study showed that coacervate formulations can be adjusted to enhance virus thermal stability; however, further work is necessary to understand how such formulations can provide thermostability without altering the immune response necessary for a successful vaccine. Such design principles would enable the development of formulations that could decrease the vaccine cold-chain dependence and improve vaccine accessibility.</div></div><div>Current vaccine formulations heavily rely on cold chains to avoid degradation during transportation and storage. Vaccines typically degrade when exposed to temperatures outside the 2–8 °C range, leading to waste and logistical challenges, particularly in rural areas. This study investigates the ability of poly­(lysine)- and poly­(glutamate)-based peptide coacervates to improve the thermal stability of porcine parvovirus (PPV), a model nonenveloped viral vaccine. We hypothesized that both the length and specific amino acid sequence of the peptides forming the coacervates would influence the stability of PPV. Long polypeptides (400–800 mers) provided significant protection, slowing PPV inactivation at 60 °C for up to 7 days by as much as 4 logs (10,000-fold), whereas shorter 48-mer homopolypeptides offered limited stability. Modifying peptide sequences revealed that glutamate-glycine block c
目前的疫苗配方严重依赖于冷链,以避免在运输和储存过程中降解。当暴露在2-8°c范围以外的温度下时,疫苗通常会降解,导致浪费和后勤挑战,特别是在农村地区。本研究探讨了聚赖氨酸和聚谷氨酸肽凝聚体对猪细小病毒(PPV)(一种非包膜病毒疫苗)热稳定性的影响。我们假设形成凝聚体的肽的长度和特定氨基酸序列都会影响PPV的稳定性。长多肽(400-800米)提供了显著的保护,在60°C下长达7天的时间里,PPV的失活速度减慢了4个对数(10,000倍),而短的48- merhom多肽提供了有限的稳定性。修改肽序列表明,较大块段的谷氨酸-甘氨酸嵌段共肽改善了热稳定性,而将丙氨酸残基掺入赖氨酸嵌段共肽则改善了长均多肽的稳定性。在配方中添加蔗糖进一步改善了热稳定性,而海藻糖显示出最小的好处。虽然凝聚对病毒的感染性没有显著影响,但利用明矾佐剂的体内研究表明,与天然病毒相比,从凝聚中释放的PPV产生的抗体应答较低,这表明存在复杂的相互作用,可能掩盖衣壳表面的免疫原性表位或降低佐剂的有效性。总之,本研究表明凝聚剂配方可以调整以增强病毒的热稳定性;然而,需要进一步的研究来了解这种配方如何在不改变成功疫苗所必需的免疫反应的情况下提供热稳定性。这样的设计原则将有助于研制出能够减少疫苗对冷链的依赖和提高疫苗可及性的制剂。
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引用次数: 0
Bioorthogonal Click Chemistry Enables Stable Cell Attachment to Silk Fibroin Scaffolds for Tissue Engineering Applications: Proof of Concept in Neural Regeneration 生物正交点击化学使细胞稳定附着在组织工程应用的丝素蛋白支架上:神经再生概念的证明
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-09-17 DOI: 10.1021/acs.biomac.6c01009
Ana Quintana-Prego, Atocha Guedan-Duran, Gustavo Victor Guinea, Juan Gomez-Rivas, Fivos Panetsos
Tissue engineering seeks effective strategies to integrate cells into scaffolds while preserving spatial organization and stability. Conventional approaches based on extracellular matrix molecules or adhesion peptides often provide weak and nonspecific attachments, limiting robust assembly of complex cellular architectures. Here, we investigate biorthogonal click chemistry to address these limitations. By enabling covalent cell-biomaterial bonding through strain-promoted azide–alkyne cycloaddition (SPAAC), we achieved stable cell-scaffold integration. As a proof of concept, we engineered artificial Bands of Büngner-like scaffolds by functionalizing silk microfibers with cyclooctyne groups and metabolically engineering Schwann cells to present azide functionalities. Over 15 days in vitro, these biohybrid scaffolds supported directed neurite outgrowth, preserved metabolic activity, and increased nerve growth factor levels at early time points. Our results support click chemistry as a robust strategy for assembling stable cell-laden scaffolds while preserving biological function, potentially enabling the tailored design of complex cellular architectures and microenvironments for tissue engineering applications.
Tissue engineering seeks effective strategies to integrate cells into scaffolds while preserving spatial organization and stability. Conventional approaches based on extracellular matrix molecules or adhesion peptides often provide weak and nonspecific attachments, limiting robust assembly of complex cellular architectures. Here, we investigate biorthogonal click chemistry to address these limitations. By enabling covalent cell-biomaterial bonding through strain-promoted azide–alkyne cycloaddition (SPAAC), we achieved stable cell-scaffold integration. As a proof of concept, we engineered artificial Bands of Büngner-like scaffolds by functionalizing silk microfibers with cyclooctyne groups and metabolically engineering Schwann cells to present azide functionalities. Over 15 days in vitro, these biohybrid scaffolds supported directed neurite outgrowth, preserved metabolic activity, and increased nerve growth factor levels at early time points. Our results support click chemistry as a robust strategy for assembling stable cell-laden scaffolds while preserving biological function, potentially enabling the tailored design of complex cellular architectures and microenvironments for tissue engineering applications.
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组织工程寻求有效的策略将细胞整合到支架中,同时保持空间组织和稳定性。基于细胞外基质分子或粘附肽的传统方法通常提供弱且非特异性的附着,限制了复杂细胞结构的强大组装。在这里,我们研究双正交点击化学来解决这些限制。通过菌株促进叠氮-炔环加成(SPAAC)使共价细胞-生物材料结合,我们实现了稳定的细胞-支架整合。为了证明这一概念,我们设计了人工bandsofbngner样支架,通过将丝微纤维功能化,并通过代谢工程使雪旺细胞具有叠氮化物功能。在体外15天,这些生物杂交支架支持神经突定向生长,保持代谢活性,并在早期时间点增加神经生长因子水平。我们的研究结果支持点击化学作为一种强大的策略来组装稳定的细胞负载支架,同时保持生物功能,有可能为组织工程应用量身定制复杂的结构和微环境。
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引用次数: 0
The Distinct Structural Propensities of Poly-C, A, and U Single-Stranded RNA Poly-C, A和U单链RNA的独特结构倾向
IF 5.9 2区 化学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2026-09-14 Epub Date: 2026-08-12 DOI: 10.1021/acs.biomac.6c00716
Tong Wang, Weiwei He, Scout Fronhofer, Serdal Kirmizialtin, Lois Pollack
Homopolymeric single-stranded RNAs (ssRNAs) are common biological motifs, yet their sequence-dependent solution structures remain incompletely defined. Particularly, rC30 and rA30 have not been characterized with atomic detail. Using optimized force fields, we integrate small-angle X-ray scattering (SAXS) with SAXS-driven molecular dynamics to generate and refine conformational ensembles for thirty-nucleotide-long strands of poly­(rA), poly­(rC), and poly­(rU) (rA30, rC30, and rU30) in identical buffers. Scattering profiles are computed from refined MD-generated ensembles and accurately reproduce the SAXS measurements. Properties of these refined ensembles are further validated by circular dichroism (CD) and UV melting. Clear sequence-dependent order emerges: rA30 is the most compact and helical, rU30 is largely coil-like, and rC30 falls in between. Together, these cross-validated ensembles define distinct conformational propensities of ssRNA homopolymers, specifically highlighting poly­(rC) as a unique, moderately structured, yet highly heterogeneous ssRNA. These findings may have implications for nucleotide-specific macromolecular recognition.
Homopolymeric single-stranded RNAs (ssRNAs) are common biological motifs, yet their sequence-dependent solution structures remain incompletely defined. Particularly, rC30 and rA30 have not been characterized with atomic detail. Using optimized force fields, we integrate small-angle X-ray scattering (SAXS) with SAXS-driven molecular dynamics to generate and refine conformational ensembles for thirty-nucleotide-long strands of poly­(rA), poly­(rC), and poly­(rU) (rA30, rC30, and rU30) in identical buffers. Scattering profiles are computed from refined MD-generated ensembles and accurately reproduce the SAXS measurements. Properties of these refined ensembles are further validated by circular dichroism (CD) and UV melting. Clear sequence-dependent order emerges: rA30 is the most compact and helical, rU30 is largely coil-like, and rC30 falls in between. Together, these cross-validated ensembles define distinct conformational propensities of ssRNA homopolymers, specifically highlighting poly­(rC) as a unique, moderately structured, yet highly heterogeneous ssRNA. These findings may have implications for nucleotide-specific macromolecular recognition.
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同聚单链rna (ssrna)是常见的生物学基序,但其序列依赖的溶液结构仍然不完全确定。特别是,rC30和rA30还没有被原子细节表征。利用优化的力场,我们将小角度x射线散射(SAXS)与SAXS驱动的分子动力学相结合,在相同的缓冲液中生成和完善30个核苷酸长的poly(rA), poly(rC)和poly(rU) (rA30, rC30和rU30)的构象集合。散射剖面从精细的md生成的集合计算,并准确地再现SAXS测量。通过圆二色性(CD)和紫外熔化进一步验证了这些精细系综的性能。清晰的序列依赖顺序出现了:ra30是最紧凑和螺旋状的,rU30主要是线圈状的,rc30介于两者之间。总之,这些交叉验证的集合定义了ssRNA均聚物的独特构象倾向,特别突出了poly(rC)作为一种独特的,中等结构的,但高度异质的ssRNA。这些发现可能对核苷酸特异性大分子识别具有启示意义。
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引用次数: 0
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Biomacromolecules
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