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Discovery of candidate antibodies and antigens for acute myeloid leukemia therapy by combining whole-cell phage display selection and CRISPR-Cas9 library screening. 结合全细胞噬菌体展示选择和CRISPR-Cas9文库筛选发现治疗急性髓系白血病的候选抗体和抗原。
IF 4.8 Q2 Medicine Pub Date : 2026-09-12 eCollection Date: 2026-10-01 DOI: 10.1093/abt/tbag043
Koji Hashimoto, Verena Konetzki, Andoni Garitano-Trojaola, Sabrina Kraus, Sabrina R Friedel, Michael Hudecek, Haiyong Peng, Christoph Rader

Background: Acute myeloid leukemia (AML) remains challenging to treat and often requires intensive chemotherapy. In contrast to other hematologic malignancies, the development of effective antibody-based and cellular immunotherapies for AML has been limited by the scarcity of suitable target antigens.

Methods: We applied a phage display-based whole-cell panning method in which Fab-phage were biotinylated and captured, followed by next-generation sequencing (NGS), bioinformatic, and statistical analyses. Target deconvolution was performed using a CRISPR-Cas9 knockout library, fluorescence-activated cell sorting of antigen-negative cells, and NGS-based gRNA analysis. Selected candidates were further evaluated using primary AML patient cells and chimeric antigen receptor (CAR)-T cell assays.

Results: We identified 28 unique monoclonal antibodies that preferentially bound AML cell lines. CRISPR-Cas9-based target deconvolution enabled efficient identification of three cognate antigens. Selected lead candidates were validated by staining primary cells from AML patients and were engineered into CAR constructs. CAR-T cells targeting the identified antigens mediated efficient eradication of AML cell lines and primary AML cells.

Conclusions: This integrated antibody-based antigen discovery and validation approach may accelerate the development of monoclonal antibody- and CAR-based immunotherapies for AML and other indications.

背景:急性髓性白血病(AML)的治疗仍然具有挑战性,通常需要强化化疗。与其他血液系统恶性肿瘤不同,由于缺乏合适的靶抗原,AML的有效抗体和细胞免疫疗法的发展受到限制。方法:采用基于噬菌体展示的全细胞筛选方法,对fab噬菌体进行生物素化和捕获,然后进行下一代测序(NGS)、生物信息学和统计学分析。使用CRISPR-Cas9敲除文库、抗原阴性细胞的荧光活化细胞分选和基于ngs的gRNA分析进行靶反褶积。使用原发AML患者细胞和嵌合抗原受体(CAR)-T细胞试验进一步评估选定的候选细胞。结果:我们鉴定出28种独特的单克隆抗体优先结合AML细胞系。基于crispr - cas9的靶标反褶积能够有效识别三种同源抗原。通过对AML患者的原代细胞进行染色,对选定的候选先导物进行验证,并将其设计成CAR结构。靶向鉴定抗原的CAR-T细胞介导AML细胞系和原代AML细胞的有效根除。结论:这种基于抗体的综合抗原发现和验证方法可能加速基于单克隆抗体和car的AML和其他适应症免疫疗法的发展。
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引用次数: 0
A landscape of sequence variants in 51 commercial antibody therapeutics. 51种商业抗体疗法序列变异的概况。
IF 4.8 Q2 Medicine Pub Date : 2026-09-08 eCollection Date: 2026-10-01 DOI: 10.1093/abt/tbag048
Gangling Xu, Gang Wu, Chunbo Cui, Sihan Wei, Maoqing Duan, Yongfei Cui, Yu Ting Mei, Chuanfei Yu, Lan Wang

Background: Sequence variants (SVs), unintended amino acid substitutions, represent a quality attribute of antibody therapeutics with potential safety and efficacy implications. Although control strategies are evolving, a comprehensive landscape of SVs in commercial antibody products, including biosimilars, innovators, and those from different expression systems or geographical origins, remains largely unexplored.

Methods: We systematically analyzed SVs in 51 commercial antibody therapeutics via optimized high-sensitivity LC-MS/MS peptide mapping. The panel encompassed originators and biosimilars from Chinese and multinational firms, eukaryotic (CHO, NS0) and prokaryotic (Escherichia coli) expression systems, and diverse formats (mAbs, bispecifics, ADCs) and subclasses (IgG1, IgG2, IgG4).

Results: Across all products, 3006 SV occurrences were identified. The vast majority (92.5%) were ≤0.1% per site. Only 7.5% (226 SV occurrences) exceeded 0.1%, 2.4% (72 SV occurrences) exceeded 0.2%, and a minimal 0.4% (12 SV occurrences) exceeded 0.5%. SV levels of Chinese biosimilars and innovators were comparable to international counterparts. While prokaryotic-derived products showed more SVs above 0.2%, SV levels showed no significant correlation with antibody subclasses or formats. Batch-to-batch consistency was excellent across all products.

Conclusions: This study provides the largest empirical SV dataset for marketed antibody therapeutics to date. It demonstrates manufacturing processes maintain SV levels below 0.2% per site and reveals no inherent SV disparity across product origin, subclass, or format. Empirically, this 0.2% threshold serves as a pragmatic benchmark for commercial antibody quality control. These findings provide a science-based reference for establishing cell line screening in-process limits, refining industrial SV control strategies, and guiding regulatory science.

背景:序列变异(SVs),即无意的氨基酸替换,代表了抗体治疗的质量属性,具有潜在的安全性和有效性影响。尽管控制策略在不断发展,但商业抗体产品(包括生物仿制药、创新产品和来自不同表达系统或地理来源的产品)中sv的全面情况仍未得到充分探索。方法:采用优化的高灵敏度LC-MS/MS多肽图谱,系统分析了51种商业抗体治疗药物中的SVs。该小组包括来自中国和跨国公司的原创药物和生物仿制药,真核(CHO, NS0)和原核(大肠杆菌)表达系统,以及各种格式(单克隆抗体,双特异性,adc)和亚类(IgG1, IgG2, IgG4)。结果:在所有产品中,确定了3006例SV事件。绝大多数(92.5%)每个位点≤0.1%。只有7.5%(226次)超过0.1%,2.4%(72次)超过0.2%,最少0.4%(12次)超过0.5%。中国生物仿制药和创新者的SV水平与国际同行相当。虽然原核衍生产物的SV含量高于0.2%,但SV水平与抗体亚类或格式没有显著相关性。所有产品的批间一致性都很好。结论:该研究提供了迄今为止市场上抗体治疗药物最大的经验性SV数据集。它证明了制造过程将SV水平维持在每个站点0.2%以下,并揭示了产品原产地、子类或格式之间没有固有的SV差异。从经验上看,0.2%的阈值可以作为商业抗体质量控制的实用基准。这些发现为建立细胞系筛选过程中限制、完善工业SV控制策略和指导调控科学提供了科学依据。
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引用次数: 0
Ultrahigh-DAR antibody-drug conjugates: advancing the next generation of targeted therapy. 超高dar抗体-药物偶联物:推进下一代靶向治疗。
IF 4.8 Q2 Medicine Pub Date : 2026-08-18 eCollection Date: 2026-10-01 DOI: 10.1093/abt/tbag042
Haosheng Feng, Bin Liu

Conventional antibody-drug conjugates (ADCs) are typically limited to drug-to-antibody ratios (DARs) of ≤8 because of restricted conjugation sites and unfavorable physicochemical properties at higher DARs, including increased hydrophobicity, aggregation, and rapid systemic clearance. Consequently, most clinically approved ADCs rely on highly potent cytotoxic payloads (e.g. IC50 < 1 nM), which can result in significant off-target toxicities. This mini-review summarizes recent advances in next-generation ultrahigh-DAR antibody therapeutics, with a particular focus on two emerging platforms: antibody polymer conjugates (APCs) and antibody-nanoparticle conjugates (ANCs). We discuss their design principles, structural features, and strategies for achieving high payload loading while preserving antigen recognition and favorable pharmacokinetic properties. Recent advances in APCs and ANCs demonstrate that polymer and nanomaterial engineering can overcome the conventional DAR limitations of ADCs, enabling substantially greater payload loading per targeting antibody without compromising targeting performance. These ultrahigh-DAR platforms also expand the range of deliverable payloads, facilitating the development of therapeutics with diverse mechanisms of action beyond traditional ultrapotent cytotoxic agents. Ultrahigh-DAR antibody therapeutics represent a promising next generation of targeted drug delivery systems. By integrating advances in polymer and nanomaterial engineering, APCs and ANCs have the potential to broaden the therapeutic landscape of antibody-based medicines and enable safer, more effective targeted therapies across a wide range of diseases.

传统的抗体-药物偶联物(adc)通常被限制在药物-抗体比(dar)≤8,因为偶联位点有限,并且在更高的dar下具有不利的物理化学性质,包括增加的疏水性、聚集性和快速的全身清除。因此,大多数临床批准的adc依赖于高效的细胞毒有效载荷(如IC50)
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引用次数: 0
An IgG-like fusion protein comprising an anti-spike S2 antibody and ACE2 exhibits potent and broad neutralization against SARS-CoV-2 and variants of concern. 一种含有抗刺突S2抗体和ACE2的igg样融合蛋白对SARS-CoV-2及其相关变体表现出有效和广泛的中和作用。
IF 4.8 Q2 Medicine Pub Date : 2026-08-06 eCollection Date: 2026-10-01 DOI: 10.1093/abt/tbag041
Zhizhong Wei, Ximing Liu, Kailun Wang, Lan Chen, Xia Xiao, Yinyan Sun, Wei Wang, Yizhe Chen, Linqiang Fang, Yonghe Qi, Fang Yang, Xinyan Hao, Ruihua Fan, Sanduo Zheng, Lili Ren, Wenhui Li, Xinxin Tian, Jianhua Sui

Background: The continuous evolution of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) highlights the value of broad-spectrum antiviral strategies. Antibody-engineering approaches targeting conserved regions of the Spike protein may enhance neutralizing potency and breadth.

Methods: A human antibody (P23) against the Spike protein of SARS-CoV-2 was identified using a human antibody phage display library panning and screening for binding affinity and breadth against multiple coronavirus Spike proteins using surface plasmon resonance (SPR). The epitope of P23 was characterized using the S1 and S2 subunits of SARS-CoV-2 Spike protein and hydrogen-deuterium exchange mass spectrometry (HDX-MS). An IgG-like bispecific fusion protein (Bs-ACE2-P23) was engineered by fusing the extracellular domain (ECD) of human angiotensin-converting enzyme 2 (ACE2) to the N-terminus of the P23 heavy chain (HC). Neutralizing activity was evaluated against both pseudotyped and authentic SARS-CoV-2 variants.

Results: P23 cross-bound Spike proteins from SARS-CoV-2 wild type (WT), D614G and JN.1 variants, Pangolin-CoV, Bat coronavirus RaTG13, and SARS-CoV-1, recognizing an epitope on the S2 subunit adjacent to the fusion peptide (FP). While P23 was ineffective against D614G-containing SARS-CoV-2 variants, Bs-ACE2-P23 exhibited markedly enhanced neutralization potency. This bispecific architecture also improved the neutralizing activity of another FP-targeting antibody.

Conclusion: We developed a bispecific fusion protein with potent broad-spectrum neutralizing activity against SARS-CoV-2 variants. This architecture provides a promising strategy for next-generation coronavirus biologics.

背景:严重急性呼吸综合征冠状病毒2 (SARS-CoV-2)的持续演变凸显了广谱抗病毒策略的价值。针对Spike蛋白保守区域的抗体工程方法可以提高中和的效力和广度。方法:采用人抗体噬菌体展示文库筛选和表面等离子体共振(SPR)技术筛选针对SARS-CoV-2刺突蛋白的人抗体(P23),并对多种冠状病毒刺突蛋白进行结合亲和力和宽度筛选。利用SARS-CoV-2刺突蛋白S1和S2亚基和氢-氘交换质谱(HDX-MS)对P23表位进行了表征。通过将人血管紧张素转换酶2 (ACE2)的胞外结构域(ECD)与P23重链(HC)的n端融合,构建了一种类igg双特异性融合蛋白(Bs-ACE2-P23)。对假型和真实SARS-CoV-2变体的中和活性进行了评估。结果:来自SARS-CoV-2野生型(WT)、D614G和JN.1变异体、山甲- cov、蝙蝠冠状病毒RaTG13和SARS-CoV-1的P23交叉结合刺突蛋白,识别融合肽(FP)附近S2亚基上的表位。虽然P23对含有d614g的SARS-CoV-2变体无效,但Bs-ACE2-P23表现出明显增强的中和效力。这种双特异性结构也提高了另一种fp靶向抗体的中和活性。结论:我们开发了一种双特异性融合蛋白,对SARS-CoV-2变体具有有效的广谱中和活性。这种结构为下一代冠状病毒生物制剂提供了一种有前途的策略。
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引用次数: 0
DOTAM-TCB: Universal Small Molecule-guided Hapten- and T Cell-bispecific Antibodies for Cancer Immunotherapy. DOTAM-TCB:用于癌症免疫治疗的通用小分子引导半抗原和T细胞双特异性抗体。
IF 4.8 Q2 Medicine Pub Date : 2026-08-04 eCollection Date: 2026-10-01 DOI: 10.1093/abt/tbag038
Marlena Surowka, Theresa Kober, Daniela Matscheko, Andreas Ehler, Wilson Macedo, Denis Assisi, John Challier, Andrzej Sobieniecki, Reto Gianotti, Ali Bransi, Johannes Sam, Juan José Bonfiglio, Moreno Wichert, Antonio Ricci, Joerg Benz, Pablo Umaña, Dario Venetz, Christian Klein

Background: Tumor heterogeneity has been identified as a major roadblock for cancer immunotherapy. To overcome this, universal effector cell engagers with interchangeable tumor-targeting adaptors have been developed. Current concepts in this field consist of antibody-based adaptors. Small-molecule (SM) ligands, on the other hand, infiltrate tissues rapidly, have short half-lives, and are potentially orally available. Therefore, we hypothesized that utilizing SM adaptors, combined with effector antibodies, could represent an attractive off-the-shelf therapy.

Methods: Here, we introduce the development of target-agnostic, small-molecule-guided hapten- and T cell-bispecific (TCB) antibodies with high affinity between the adaptor-effector pair. Specifically, we designed SM adaptors based on known tumor-targeting ligands with specificity to the antigens folate receptor 1 (FOLR1), prostate-specific membrane antigen (PSMA) and carbonic anhydrase IX (CAIX), and conjugated them to Ca2+-loaded 1,4,7,10-tetrakis(carbamoylmethyl)-1,4,7,10-tetraazacyclododecane (DOTAM) as a hapten. As an effector antibody, we designed DOTAM-specific T cell bispecific antibodies (DOTAM-TCB) with femtomolar (fM) affinity for the hapten.

Results: In vitro experiments showed in-solution assembly of stable adaptor-effector complexes. Additionally, T cell-mediated tumor killing was initiated by the universal DOTAM-TCB when combined with adaptors across various tumor cells. Ex vivo study of CAIX-directed Ca-DOTAM-acetazolamide (Ca-DOTAM-AAZ) with DOTAM-TCB showed potent activation of T cells against murine-engrafted human HT-29 tumor.

Conclusions: The studies described here demonstrate proof-of-concept for using hapten-containing small molecules as adaptors for effective universal T cell engager-based cancer immunotherapy.

背景:肿瘤异质性已被确定为癌症免疫治疗的主要障碍。为了克服这一点,已经开发出具有可互换肿瘤靶向接头的通用效应细胞接合器。目前该领域的概念包括基于抗体的适配器。另一方面,小分子(SM)配体迅速渗透组织,半衰期短,并且可能口服可用。因此,我们假设利用SM接头与效应抗体结合,可能是一种有吸引力的现成治疗方法。方法:在这里,我们介绍了靶向不可知的、小分子引导的半抗原和T细胞双特异性(TCB)抗体的开发,这些抗体在适配器-效应对之间具有高亲和力。具体来说,我们基于已知的肿瘤靶向配体设计了SM适配器,这些配体对抗原叶酸受体1 (FOLR1)、前列腺特异性膜抗原(PSMA)和碳酸酐酶IX (CAIX)具有特异性,并将它们偶联到负载Ca2+的1,4,7,10-四基(氨基甲基)-1,4,7,10-四氮杂环十二烷(DOTAM)作为半抗原。作为效应抗体,我们设计了对半抗原具有飞摩尔(fM)亲和力的dotam特异性T细胞双特异性抗体(DOTAM-TCB)。结果:体外实验显示了稳定的适配器-效应复合物在溶液中的组装。此外,当与各种肿瘤细胞的接头结合时,T细胞介导的肿瘤杀伤由通用的DOTAM-TCB启动。体外研究表明,cax导向的Ca-DOTAM-acetazolamide (Ca-DOTAM-AAZ)与DOTAM-TCB可有效激活T细胞,对抗小鼠移植的人HT-29肿瘤。结论:本文描述的研究证明了使用含半抗原的小分子作为有效的通用T细胞接合子癌症免疫治疗的适配器的概念验证。
{"title":"DOTAM-TCB: Universal Small Molecule-guided Hapten- and T Cell-bispecific Antibodies for Cancer Immunotherapy.","authors":"Marlena Surowka, Theresa Kober, Daniela Matscheko, Andreas Ehler, Wilson Macedo, Denis Assisi, John Challier, Andrzej Sobieniecki, Reto Gianotti, Ali Bransi, Johannes Sam, Juan José Bonfiglio, Moreno Wichert, Antonio Ricci, Joerg Benz, Pablo Umaña, Dario Venetz, Christian Klein","doi":"10.1093/abt/tbag038","DOIUrl":"https://doi.org/10.1093/abt/tbag038","url":null,"abstract":"<p><strong>Background: </strong>Tumor heterogeneity has been identified as a major roadblock for cancer immunotherapy. To overcome this, universal effector cell engagers with interchangeable tumor-targeting adaptors have been developed. Current concepts in this field consist of antibody-based adaptors. Small-molecule (SM) ligands, on the other hand, infiltrate tissues rapidly, have short half-lives, and are potentially orally available. Therefore, we hypothesized that utilizing SM adaptors, combined with effector antibodies, could represent an attractive off-the-shelf therapy.</p><p><strong>Methods: </strong>Here, we introduce the development of target-agnostic, small-molecule-guided hapten- and T cell-bispecific (TCB) antibodies with high affinity between the adaptor-effector pair. Specifically, we designed SM adaptors based on known tumor-targeting ligands with specificity to the antigens folate receptor 1 (FOLR1), prostate-specific membrane antigen (PSMA) and carbonic anhydrase IX (CAIX), and conjugated them to Ca<sup>2+</sup>-loaded 1,4,7,10-tetrakis(carbamoylmethyl)-1,4,7,10-tetraazacyclododecane (DOTAM) as a hapten. As an effector antibody, we designed DOTAM-specific T cell bispecific antibodies (DOTAM-TCB) with femtomolar (fM) affinity for the hapten.</p><p><strong>Results: </strong><i>In vitro</i> experiments showed in-solution assembly of stable adaptor-effector complexes. Additionally, T cell-mediated tumor killing was initiated by the universal DOTAM-TCB when combined with adaptors across various tumor cells. <i>Ex vivo</i> study of CAIX-directed Ca-DOTAM-acetazolamide (Ca-DOTAM-AAZ) with DOTAM-TCB showed potent activation of T cells against murine-engrafted human HT-29 tumor.</p><p><strong>Conclusions: </strong>The studies described here demonstrate proof-of-concept for using hapten-containing small molecules as adaptors for effective universal T cell engager-based cancer immunotherapy.</p>","PeriodicalId":36655,"journal":{"name":"Antibody Therapeutics","volume":"9 4","pages":"535-549"},"PeriodicalIF":4.8,"publicationDate":"2026-08-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13628132/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149115952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Hinge-region Cys-to-Ser mutation enables homogeneous DAR6 anti-c-Met biparatopic ADCs with tolerable O-glycosylation. 铰链区Cys-to-Ser突变使具有耐受o糖基化的均匀DAR6抗c- met双异位adc成为可能。
IF 4.8 Q2 Medicine Pub Date : 2026-07-31 eCollection Date: 2026-10-01 DOI: 10.1093/abt/tbag040
Deyong Song, Zhenduo Shen, Xiaolin Zhu, Haifeng Zhao, Yingdi Wang, Junmei Zhang, Rui Li, Hongguang Xu, Zengjin Cheng, Xiaoju Ma, Haixia Lin, Changlin Dou, Min Xiao

Background: Antibody-drug conjugates (ADCs) with homogeneous drug-to-antibody ratios (DARs) are increasingly favored for their improved physicochemical and pharmacokinetic properties; however, strategies to reliably generate homogeneous DAR6 ADCs remain limited.

Methods: In this study, we investigate hinge-region cysteine engineering as an approach to constrain conjugation stoichiometry, using a potent biparatopic anti-c-Met antibody as a model. Various biological and physicochemical assays were used for its characterization.

Results: We show that substitution of a hinge-region cysteine within a CPPC (Cysteine - Proline - Proline - Cysteine) motif reduces the number of accessible conjugation sites, allowing reproducible generation of homogeneous DAR6 ADCs. During characterization of Ser- or Thr-substituted hinge variants, we observed additional mass species consistent with mucin-type O-linked glycosylation. Site-specific mass spectrometry analyses localized these modifications to a serine residue within hinge-region and identified the core structures of the O-glycans. Analysis of additional antibodies carrying analogous mutations demonstrated that hinge-associated O-glycosylation is not restricted to a single antibody scaffold.

Conclusions: These results demonstrate that hinge-region cysteine engineering can serve as a rational and adaptable approach for DAR6 ADC development while highlighting the need for case-by-case evaluation of associated post-translational modifications during antibody engineering.

背景:具有均匀药物-抗体比(dar)的抗体-药物偶联物(adc)因其改善的物理化学和药代动力学性质而越来越受到青睐;然而,可靠地生成同质DAR6 adc的策略仍然有限。方法:在本研究中,我们以一种有效的双异位抗c- met抗体为模型,研究了铰链区域半胱氨酸工程作为约束偶联化学计量学的方法。采用各种生物和物理化学方法对其进行表征。结果:我们发现,在CPPC(半胱氨酸-脯氨酸-脯氨酸-半胱氨酸)基序中替换一个铰链区域的半胱氨酸减少了可接近的偶联位点的数量,从而可以重复地生成均匀的DAR6 adc。在表征Ser-或thr -取代的铰链变体时,我们观察到与粘蛋白型o -链糖基化一致的额外质量种。位点特异性质谱分析将这些修饰定位在铰链区域的丝氨酸残基上,并确定了o -聚糖的核心结构。对携带类似突变的其他抗体的分析表明,铰链相关的o -糖基化并不局限于单个抗体支架。结论:这些结果表明,铰链区半胱氨酸工程可以作为DAR6 ADC开发的一种合理且适应性强的方法,同时强调了在抗体工程中对相关翻译后修饰进行个案评估的必要性。
{"title":"Hinge-region Cys-to-Ser mutation enables homogeneous DAR6 anti-c-Met biparatopic ADCs with tolerable O-glycosylation.","authors":"Deyong Song, Zhenduo Shen, Xiaolin Zhu, Haifeng Zhao, Yingdi Wang, Junmei Zhang, Rui Li, Hongguang Xu, Zengjin Cheng, Xiaoju Ma, Haixia Lin, Changlin Dou, Min Xiao","doi":"10.1093/abt/tbag040","DOIUrl":"https://doi.org/10.1093/abt/tbag040","url":null,"abstract":"<p><strong>Background: </strong>Antibody-drug conjugates (ADCs) with homogeneous drug-to-antibody ratios (DARs) are increasingly favored for their improved physicochemical and pharmacokinetic properties; however, strategies to reliably generate homogeneous DAR6 ADCs remain limited.</p><p><strong>Methods: </strong>In this study, we investigate hinge-region cysteine engineering as an approach to constrain conjugation stoichiometry, using a potent biparatopic anti-c-Met antibody as a model. Various biological and physicochemical assays were used for its characterization.</p><p><strong>Results: </strong>We show that substitution of a hinge-region cysteine within a CPPC (Cysteine - Proline - Proline - Cysteine) motif reduces the number of accessible conjugation sites, allowing reproducible generation of homogeneous DAR6 ADCs. During characterization of Ser- or Thr-substituted hinge variants, we observed additional mass species consistent with mucin-type O-linked glycosylation. Site-specific mass spectrometry analyses localized these modifications to a serine residue within hinge-region and identified the core structures of the <i>O</i>-glycans. Analysis of additional antibodies carrying analogous mutations demonstrated that hinge-associated O-glycosylation is not restricted to a single antibody scaffold.</p><p><strong>Conclusions: </strong>These results demonstrate that hinge-region cysteine engineering can serve as a rational and adaptable approach for DAR6 ADC development while highlighting the need for case-by-case evaluation of associated post-translational modifications during antibody engineering.</p>","PeriodicalId":36655,"journal":{"name":"Antibody Therapeutics","volume":"9 4","pages":"521-534"},"PeriodicalIF":4.8,"publicationDate":"2026-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13628133/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149115923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Beyond affinity: AI-supported developability assessment and multi-objective optimization in antibody development. 超越亲和力:人工智能支持的抗体开发可发展性评估和多目标优化。
IF 4.8 Q2 Medicine Pub Date : 2026-07-31 eCollection Date: 2026-10-01 DOI: 10.1093/abt/tbag039
Qianhui Jiang, Jiahui Guan, Dan Yu, Pradeep Singh, George Pelekos, Edward Chin Man Lo, Junwen Wang

Therapeutic antibodies are a major class of medicines, but high target affinity alone does not ensure manufacturability, stability, safety, or clinical success. Developability has therefore become a central constraint in antibody engineering and has pushed the field beyond affinity-first screening toward multi-objective decision-making. Machine-learning-based models increasingly integrate antibody sequence, structure, interaction, and assay data to estimate properties such as affinity, specificity, aggregation, viscosity, solubility, stability, immunogenicity, and pharmacokinetics before experimental testing. In practice, these models are most useful when they help prioritize experiments rather than replace empirical evaluation. Here, we review the data resources used for antibody developability modeling, the main classes of property predictors, and optimization frameworks that balance competing design objectives. We cover Pareto optimization, Bayesian optimization, active learning, and conditional generative modeling, and discuss how these approaches are being adapted to bispecific antibodies and nanobodies. We argue that AI is most useful when model outputs are interpreted in the context of assay design, uncertainty, and antibody format, and when they are used to guide candidate selection and experimental design rather than serve as stand-alone surrogates for developability.

治疗性抗体是一类主要的药物,但仅靠高靶标亲和力并不能确保可制造性、稳定性、安全性或临床成功。因此,可开发性已成为抗体工程的核心约束,并将该领域从亲和优先筛选推向多目标决策。基于机器学习的模型越来越多地整合抗体序列、结构、相互作用和分析数据,以在实验测试之前估计亲和力、特异性、聚集性、粘度、溶解度、稳定性、免疫原性和药代动力学等特性。在实践中,当这些模型帮助确定实验的优先级而不是取代经验评估时,它们是最有用的。在这里,我们回顾了用于抗体可开发性建模的数据资源,主要类别的属性预测器,以及平衡竞争设计目标的优化框架。我们涵盖了帕累托优化、贝叶斯优化、主动学习和条件生成建模,并讨论了如何将这些方法应用于双特异性抗体和纳米体。我们认为,当模型输出在分析设计、不确定性和抗体格式的背景下被解释时,当它们被用来指导候选物的选择和实验设计而不是作为可发展性的独立替代品时,人工智能是最有用的。
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引用次数: 0
Conformational epitope engagement by anti-MSLN ADC RC88 confers resistance to soluble mesothelin. 抗msln ADC RC88的构象表位结合赋予对可溶性间皮素的抗性。
IF 4.8 Q2 Medicine Pub Date : 2026-07-08 eCollection Date: 2026-07-01 DOI: 10.1093/abt/tbag036
Yidan Xu, Mingyang Li, Lili Wang, Kailin Wang, Xiao Wang, Xiaoping Zhang, Zhanjiao Yu, Yinghao Xin, Chenglin He, Xiangyi He, Jing Zhou, Xiaoshan Min, Hang Chen, Zhulun Wang, Dong Li, Jianmin Fang, Yuanhao Li

Background: Mesothelin (MSLN) is a therapeutic target for antibody-drug conjugates (ADCs) due to its tumor-selective overexpression. However, soluble MSLN (sMSLN) in circulation compromises efficacy by acting as a decoy. RC88 is a clinical-stage ADC composed of a humanized anti-MSLN antibody conjugated to a monomethyl auristatin E (MMAE) payload. This study elucidates the unique binding mechanism that allows RC88 to maintain superior efficacy despite sMSLN interference.

Methods: We characterized the RC88-MSLN interaction via structural analysis and mutagenesis. The impact of sMSLN on binding was assessed using competitive cellular assays. In vitro internalization kinetics and cytotoxicity were evaluated to determine the therapeutic potential.

Results: RC88 targets a high-affinity N-terminal epitope overlapping the MUC16/CA125-binding site, competitively inhibiting this interaction. Notably, due to the structural flexibility of MSLN, RC88 also engages a secondary, low affinity juxtamembrane epitope at the C-terminus. This conformational binding confers resistance to sMSLN interference and enhanced tumor cell retention. In vitro, RC88-ADC maintained near-complete cytotoxic potency even in the presence of physiologically relevant sMSLN concentrations. In vivo, RC88 suppressed tumor growth in ovarian cancer xenografts.

Conclusion: Our findings demonstrate that RC88 utilizes a novel conformational binding strategy to overcome the limitations of soluble antigen interference. These findings provide a mechanistic rationale for the encouraging clinical activity of RC88 and suggest that conformational epitope targeting represents a promising strategy for overcoming sMSLN interference in MSLN-positive cancers.

背景:间皮素(MSLN)由于其肿瘤选择性过表达而成为抗体-药物偶联物(adc)的治疗靶点。然而,在循环中,可溶性MSLN (sMSLN)作为诱饵,影响了效果。RC88是一种临床期ADC,由人源抗msln抗体偶联到单甲基auristatin E (MMAE)有效载荷组成。本研究阐明了独特的结合机制,使RC88在sMSLN干扰下仍能保持优越的疗效。方法:通过结构分析和诱变对RC88-MSLN相互作用进行表征。sMSLN对结合的影响通过竞争性细胞试验进行评估。体外内化动力学和细胞毒性评估,以确定治疗潜力。结果:RC88靶向MUC16/ ca125结合位点重叠的高亲和力n端表位,竞争性地抑制这种相互作用。值得注意的是,由于MSLN的结构灵活性,RC88在c端也有一个次要的、低亲和力的近膜表位。这种构象结合赋予抵抗sMSLN干扰和增强肿瘤细胞保留的能力。在体外,即使存在与生理相关的sMSLN浓度,RC88-ADC也能保持近乎完全的细胞毒效力。在体内,RC88抑制卵巢癌异种移植物的肿瘤生长。结论:我们的研究结果表明RC88利用一种新的构象结合策略来克服可溶性抗原干扰的局限性。这些发现为RC88令人鼓舞的临床活性提供了机制基础,并表明构象表位靶向是克服sMSLN阳性癌症中sMSLN干扰的一种有希望的策略。
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引用次数: 0
Fully human antagonistic antibodies targeting FPR2 through dual extracellular-loop engagement for gastric cancer therapy. 通过双细胞外环作用靶向FPR2的全人拮抗抗体用于胃癌治疗。
IF 4.8 Q2 Medicine Pub Date : 2026-07-03 eCollection Date: 2026-07-01 DOI: 10.1093/abt/tbag035
Min Su Kim, Tae Hyun Kang

Background: Gastric cancer (GC) remains a major cause of cancer mortality worldwide, particularly in metastatic stages. N-formyl peptide receptor 2 (FPR2), a class A G protein-coupled receptor activated by the Helicobacter pylori-derived peptide Hp(2-20), promotes GC progression by stimulating oncogenic signaling pathways. However, no clinically applicable agents selectively targeting FPR2 have been developed.

Methods: We generated fully human antagonistic antibodies targeting FPR2 using a two-step discovery strategy. A CDR-H3-focused synthetic single-chain variable fragment library was screened against an extracellular loop 3 (ECL3) peptide, followed by light-chain engineering to confer dual engagement of extracellular loop 2 (ECL2).

Results: The engineered antibody exhibited dose-dependent binding to both ECL2 and ECL3 peptides, selectively recognized FPR2 over other FPR family members, and showed nanomolar binding to FPR2-expressing cancer cells. The antibody inhibited Hp(2-20)-induced calcium mobilization and suppressed migration and invasion of Adenocarcinoma Gastric (AGS) gastric cancer cells. Structural modeling indicated a lid-like binding mode occluding the orthosteric pocket.

Conclusions: We developed a fully human antagonistic antibody that selectively binds and inhibits FPR2 through dual extracellular-loop engagement. The antibody potentially suppresses FPR2-driven signaling and invasive behaviors in gastric cancer cells, supporting its development for therapeutic application. Further assessment of its efficacy in vivo is warranted.

背景:胃癌(GC)仍然是世界范围内癌症死亡的主要原因,特别是在转移期。n-甲酰基肽受体2 (FPR2)是一种由幽门螺杆菌衍生肽Hp(2-20)激活的a类G蛋白偶联受体,通过刺激致癌信号通路促进胃癌进展。然而,目前尚未开发出临床上适用的选择性靶向FPR2的药物。方法:我们采用两步发现策略生成了针对FPR2的全人拮抗抗体。针对细胞外环3 (ECL3)肽筛选了以cdr - h3为重点的合成单链可变片段文库,随后进行轻链工程以赋予细胞外环2 (ECL2)双重作用。结果:该工程抗体与ECL2和ECL3肽均表现出剂量依赖性结合,选择性识别FPR2而不是其他FPR家族成员,并与表达FPR2的癌细胞表现出纳米级结合。该抗体抑制Hp(2-20)诱导的钙动员,抑制腺癌胃(AGS)癌细胞的迁移和侵袭。结构建模显示,闭合矫正袋呈盖状束缚模式。结论:我们开发了一种完全的人类拮抗抗体,通过双细胞外环结合选择性地结合和抑制FPR2。该抗体可能抑制胃癌细胞中fpr2驱动的信号传导和侵袭行为,支持其治疗应用的发展。对其体内疗效的进一步评估是必要的。
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引用次数: 0
Delivery devices and container closure systems for co-formulated and co-administered biologics. 用于共配制和共施用生物制剂的输送装置和容器封闭系统。
IF 4.8 Q2 Medicine Pub Date : 2026-06-22 eCollection Date: 2026-07-01 DOI: 10.1093/abt/tbag034
Ming Zhou, Kevin Duffy, Chris Mitchener, Galen Huaiqiu Shi, David Collins

The rapid evolution of antibody-based biologics is transforming the management of chronic conditions and driving innovation in drug-delivery devices and container closure systems (CCS). Combination therapy enabled through coformulation or coadministration offers the potential for synergistic outcomes that are not achievable with single-drug products. This review examines development pathways and emerging strategies for delivery devices and CCS that support antibody-biologic coformulations and coadministration, from clinical trials through commercialization. We evaluate established technologies with an emphasis on design and delivery mechanisms, and on key technical considerations, including compatibility with dual-molecule formulations, protein-protein interactions, sterilization approaches, container closure integrity, and human factors in CCS and device design. We also highlight emerging technologies and future opportunities for advancement. Overall, this review provides insights into the challenges and innovations shaping CCS and delivery systems for co-formulated or co-administered antibody biologics.

基于抗体的生物制剂的快速发展正在改变慢性病的管理,并推动药物输送装置和容器封闭系统(CCS)的创新。通过联合制剂或联合给药实现的联合治疗提供了单一药物产品无法实现的潜在协同效果。本文综述了从临床试验到商业化,支持抗体-生物联合制剂和联合给药的递送装置和CCS的发展途径和新兴战略。我们对现有技术进行评估,重点是设计和递送机制,以及关键技术考虑因素,包括与双分子配方的兼容性、蛋白质-蛋白质相互作用、灭菌方法、容器封闭完整性以及CCS和设备设计中的人为因素。我们还强调了新兴技术和未来的发展机会。总的来说,这篇综述提供了对共同配制或共同给药的抗体生物制剂的CCS和递送系统的挑战和创新的见解。
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引用次数: 0
期刊
Antibody Therapeutics
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