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Solvation Structure, Ion Association, and Transport in Sodium Glyme Electrolytes: From Monoglyme to Pentaglyme and Binary Mixtures 钠甘氨酸电解质的溶剂化结构、离子缔合和运输:从单甘氨酸到五甘氨酸和二元混合物
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c05191
Blessing Adeleye, Valeria Bonilla, Orlando Carrillo-Bohórquez, Fedra Leonik, Ryan Jorn, Daniel Kuroda, Revati Kumar

Glyme-based electrolyteshave emerged as promising candidates forsodium-ion batteries owing to their ability to form stable solvationstructures around Na+ via multidentate coordination withether oxygen atoms. While the solvation and transport properties ofsodium bis(trifluoromethanesulfonyl)imide (NaTFSI) in short-chainglymes have been systematically investigated, solutions of pentaglyme(G5) remain poorly understood and, to the best of our knowledge, areunexplored in binary glyme mixtures. Herein, molecular dynamics (MD)simulations are used to investigate the solvation structure, ion association,and transport properties of NaTFSI across six systems: monoglyme (G1),triglyme (G3), and pentaglyme (G5), as well as three binary G1:G3mixtures of varying composition. A combination of experiments andsimulations is employed to provide a comprehensive structural anddynamic characterization, including ionic conductivity, viscosity,van Hove correlation functions, and Walden analysis. The results revealthat G3 preferentially displaces G1 from the Na+ coordinationshell, even when present in small amounts, thereby generating freeG1 molecules that reduce viscosity in G1-containing systems. Analysisof the Na+–Na+ spatial correlations revealsa glyme-bridged Na+–G3–Na+ structuralmotif unique to G3 and persisting across all G3-containing mixtures.In contrast, G5 exhibits fundamentally different dynamical behaviorfrom G1(0.5):G3(0.5), despite providing the same oxygen-to-Na+ ratio, displaying the highest viscosity and lowest conductivityamong all systems studied while maintaining long-lived Na+-Na+ structural correlations. Within the binary mixtures,the G1(0.25):G3(0.75) electrolyte achieves the optimal balance, exhibitingthe smallest deviation from the ideal Walden line. These findingsdemonstrate that molecular architecture, as well as chain length,governs electrolyte behavior, providing fundamental insights for therational design of glyme-based sodium-ion battery electrolytes.

炔基电解质已成为钠离子电池的有前途的候选者,因为它们能够通过与氧原子的多齿配位在Na+周围形成稳定的溶剂化结构。虽然已经系统地研究了二(三氟甲磺酰基)亚胺钠(NaTFSI)在短链莱姆中的溶剂化和输运性质,但对五酰胺(G5)的溶液仍然知之甚少,据我们所知,在二元莱姆混合物中尚未进行探索。本文采用分子动力学(MD)模拟研究了NaTFSI在六种体系中的溶剂化结构、离子结合和输运性质:单lyme (G1)、triglyme (G3)和pentaglyme (G5),以及三种不同组成的二元G1:G3混合物。实验和模拟相结合,提供全面的结构和动态表征,包括离子电导率,粘度,van Hove相关函数和瓦尔登分析。结果表明,G3优先取代Na+配位壳上的G1,即使少量存在,从而产生自由的eg1分子,降低含有G1的体系的粘度。对Na+ -Na +空间相关性的分析揭示了G3特有的glyme桥接Na+ -G3-Na +结构基序,并持续存在于所有含G3的混合物中。相比之下,G5表现出与G1(0.5)和G3(0.5)根本不同的动力学行为,尽管提供相同的氧与Na+比,在所有研究体系中表现出最高的粘度和最低的电导率,同时保持长期的Na+-Na+结构相关性。在二元混合物中,G1(0.25):G3(0.75)电解质达到最佳平衡,与理想瓦尔登线的偏差最小。这些发现表明,分子结构以及链长度控制着电解质的行为,为glymebased钠离子电池电解质的理论设计提供了基本的见解。
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引用次数: 0
Tetrasubstituted Chiral Calix[4]arene Platform for Tunable Chiroptical Detection of d/l-Amino Acids 四取代手性杯芳烃平台可调d/l-氨基酸的热带检测
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c05294
Zi-Xuan Zhang, Xue-Yao Wang, Zhi-Bo Yang, Jia-Rui Sun, Wen-Hao Pan, Yang Li, Yu-Jiao Ma, Xin-Yue Duan, Ning-Ning Zhang, Kun Liu

Detectionof amino acid chirality is important for biomedical applications,yet the direct recognition of underivatized d/l-aminoacids remains challenging because of their subtle stereochemical differences.Herein, we report a pair of upper-rim tetrasubstituted chiral Schiff-basecalix[4]arenes, R-C4A and S-C4A, in which four configurationally identicalphenylglycinol-derived side arms form an intrinsically chiral chromophorearray around the calixarene rim. The hosts translate amino-acid-dependenthost-guest interactions into tunable circular dichroism (CD) signals,enabling the direct differentiation of underivatized d/l-amino acids. Among the amino acids examined, Proline, Phenylalanine,and Tryptophan produce the most pronounced chiroptical responses.Aromatic amino acids and Proline induce CD changes in opposite directions,indicating that side-chain aromaticity, backbone rigidity, and bindinggeometry govern the reorganization and coupling of the upper-rim chromophores.A linear correlation between the CD response and the enantiomericexcess of Proline further enables quantitative analysis of its enantiomericcomposition. Spectroscopic investigations, together with solvent-and metal-ion-dependent modulation, confirm that the chiroptical responsesoriginate from interaction-driven conformational reorganization ofthe Schiff-base side arms. This work establishes an adaptive chiralchromophore-array strategy for direct and solvent-tunable chiropticaldetection of d/l-amino acids.

氨基酸手性的检测对生物医学应用很重要,但由于其细微的立体化学差异,直接识别未激活的d/l氨基酸仍然具有挑战性。本文报道了一对上环四取代的手性席夫碱杯芳烃R-C4A和S-C4A,其中四个构型相同的苯基甘二醇衍生侧臂在杯芳烃环周围形成固有手性色阵列。宿主将氨基酸依赖的宿主-客体相互作用转化为可调节的圆二色性(CD)信号,使未分化的d/l-氨基酸能够直接分化。在被检测的氨基酸中,脯氨酸、苯丙氨酸和色氨酸产生最明显的神经反应。芳香族氨基酸和脯氨酸诱导CD的变化方向相反,表明侧链芳香性、主链刚性和结合几何形状控制着上缘发色团的重组和偶联。CD响应与脯氨酸对映体过量之间的线性相关进一步使其对映体组成的定量分析成为可能。光谱研究,连同溶剂和金属离子依赖的调制,证实了热响应源于相互作用驱动的希夫碱侧臂构象重组。本工作建立了一种自适应手性发色团阵列策略,用于直接和溶剂可调的手性检测d/l-氨基酸。
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引用次数: 0
Liposomes Coloaded with Paclitaxel and Doxorubicin: Analyses of Mechanical Characteristics and Synergistic Cytotoxic Action on Melanoma Cells 与紫杉醇和阿霉素复合的脂质体:对黑色素瘤细胞的力学特性和协同细胞毒性作用的分析
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-25 DOI: 10.1021/acs.jpcb.6c03196
Deepak Kumar, Allikayala Archana, Sanjay Tiwari

In this study, we report drug-induced changes in themechanicalproperties of liposomal vesicles. The formulation, composed of l-α-phosphatidylcholine (SPC) and sodium deoxycholate(NaDC), was prepared using the solvent evaporation method. It wasloaded separately with paclitaxel (PLX), doxorubicin (DOX), and thepaclitaxel–doxorubicin (PLX–DOX) combination using thetransmembrane gradient method. The effect of the incorporation ofthese payloads was analyzed by atomic force microscopy (AFM)-based spectroscopic experiments. Changes in the rigidity and Young’smodulus of vesicles were recorded. We observed that drug loading causedmeasurable alterations in the mechanical behavior of vesicles. PLX-loadedvesicles exhibited a greater Young’s modulus than those loadedwith DOX. Overall, drug-induced changes in Young’s moduluscould be ranked as follows: PLX ≥ PLX–DOX > DOX.Anticanceractivity of the formulation was evaluated against B16–F10 melanomacells. Using microscopy and flow cytometry, we show that PLX–DOX-loadedliposomal formulations were efficiently internalized into the cellsand triggered apoptotic death through synergistic action.

在这项研究中,我们报道了药物引起的脂质体囊泡力学性质的变化。采用溶剂蒸发法制备了l-α-磷脂酰胆碱(SPC)和脱氧胆酸钠(NaDC)。采用跨膜梯度法分别负载紫杉醇(PLX)、阿霉素(DOX)和紫杉醇-阿霉素(PLX - DOX)组合。通过原子力显微镜(AFM)的光谱实验分析了这些载荷的影响。记录了囊泡刚度和杨氏模量的变化。我们观察到,药物装载导致囊泡力学行为的可测量变化。负载plx的囊泡比负载DOX的囊泡具有更大的杨氏模量。总体而言,药物引起的杨氏模量变化可按以下顺序排序:PLX≥PLX - DOX >; DOX。该制剂对B16-F10黑色素瘤细胞的抗癌活性进行了评价。通过显微镜和流式细胞术,我们发现负载plx - dox的脂质体制剂被有效地内化到细胞中,并通过协同作用引发凋亡死亡。
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引用次数: 0
Study on the Methyl Viologen-Mediated Electrochemical Reduction of Coenzyme NAD+ in the Triton X-100-Stabilized Methyl tert-Butyl Ether-in-H2O Microemulsion 甲基紫堇素在Triton x -100稳定的甲基叔丁基醚-水微乳液中介导辅酶NAD+的电化学还原研究
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-29 DOI: 10.1021/acs.jpcb.6c04531
Xiaonan Li, Xirong Huang
<p>An oil-in-water microemulsion isan excellent candidatemediumfor the electrochemical regeneration of the coenzyme NADH and itssubsequent coupled conversion application due to its good electricalconductivity and solubilization capacity for hydrophobic substrates.In this work, the reduced methyl viologen (MV<sup>+•</sup>)-mediatedelectrochemical reduction of coenzyme NAD<sup>+</sup> was studiedin a Triton X-100 (TX-100)-stabilized methyl <em>tert</em>-butyl ether (MTBE)-in-water microemulsion. The effects of the surfactantconcentration and the oil content on the electrochemical behaviorof the MV<sup>2+</sup>/MV<sup>+•</sup> couple and the activityof diaphorase (DH) were systematically investigated. The results showthat in the microemulsion, the couple exhibits excellent reversibility.Compared with the aqueous buffer system, the couple in the microemulsionsystem has a more positive formal potential and a lower redox peakcurrent, depending on the levels of both the surfactant and the oil.The positive shift of the formal potential is attributed to the stabilizingeffect of the surfactant aggregates on the relatively hydrophobicMV<sup>+•</sup> species, and the decrease of the redox currentsis ascribed to the decrease of the electroactive area of the electrodedue to the adsorption of the surfactant and the oil as well as thedecrease of the diffusion coefficients of MV species associated withor solubilized in the surfactant aggregates. The activity of DH inthe microemulsion system also depends on the TX-100 concentrationand the MTBE content. Increases in both [TX-100] and [MTBE] resultin a decrease in DH activity. This phenomenon could be explained basedon the [TX-100]/[MTBE]-dependent changes in the local acidity andthe local concentration of the substrate DCPIP in the microemulsions.Based on cyclic voltammetry, the MV<sup>+•</sup>-mediated electroreductionof NAD<sup>+</sup> in the TX-100-stabilized MTBE/H<sub>2</sub>O (0.1M PB, pH = 7.0) microemulsion was studied. For the microemulsion systemcontaining 0.5 mM MV<sup>2+</sup>, 5 mM NAD<sup>+</sup>, and 26.6μM DH, when a scan rate of 2 mV s<sup>–1</sup> was applied,a typical steady-state S-shaped CV curve was obtained. UV–visspectroscopy confirms that the NADH generated by the mediated reactionis bioactive. By coupling the MV<sup>+•</sup>-mediated NADHelectrochemical regeneration reaction with the horse liver alcoholdehydrogenase (HLADH)-catalyzed reduction of the hydrophobic substrate4-phenyl-2-butanone, the enantiomerically pure (S)-4-phenyl-2-butanolcan be selectively obtained. After 12 h, the yield of the productin the microemulsion is approximately 10 times that in the DMSO-buffermixed homogeneous system. This difference in yield is caused by thedifferences in enzyme activity and stability, as well as in the substratelocal concentration and reactivity in the two systems. The presentstudy indicates that the TX-100-stabilized MTBE-in-water microemulsionis a suitable medium for the electrochemical reg
由于其良好的导电性和对疏水底物的增溶能力,水包油微乳液是辅酶NADH电化学再生及其后续耦合转化应用的优秀候选介质。在Triton X-100 (TX-100)稳定的甲基叔丁基醚(MTBE)水微乳液中,研究了甲基紫素(MV+•)介导的辅酶NAD+的电化学还原。系统研究了表面活性剂浓度和含油量对MV2+/MV+•偶联电化学行为和脱氢酶(DH)活性的影响。结果表明,该偶对在微乳液中表现出优异的可逆性。与含水缓冲体系相比,微乳体系中的偶联具有更正的形式电位和更低的氧化还原峰电流,这取决于表面活性剂和油的水平。形式电位的正向移动归因于表面活性剂团聚体对相对疏水的MV+•物质的稳定作用,氧化还原电流的减小归因于表面活性剂和油的吸附使电极的电活性面积减小以及与表面活性剂团聚体相关或溶解的MV物质的扩散系数减小。微乳体系中DH的活性也取决于TX-100的浓度和MTBE的含量。[TX-100]和[MTBE]的增加导致DH活性降低。这种现象可以根据微乳中[TX-100]/[MTBE]依赖性局部酸度和底物DCPIP局部浓度的变化来解释。基于循环伏安法,研究了MV+•在tx -100稳定MTBE/H2O (0.1M PB, pH = 7.0)微乳液中对NAD+的电还原反应。对于含有0.5 mM MV2+、5 mM NAD+、26.6μM DH的微乳液体系,当扫描速率为2 mV s-1时,得到了典型的稳态s型CV曲线。紫外-黏附光谱证实介导反应产生的NADH具有生物活性。通过将MV+•介导的nadheline电化学再生反应与马肝醇脱氢酶(HLADH)催化的疏水基4-苯基-2-丁酮还原反应偶联,可以选择性地获得对映体纯的(S)-4-苯基-2-丁醇。12 h后,微乳液的产率约为dmso -缓冲液混合均匀体系的10倍。这种产量的差异是由酶活性和稳定性的差异以及两种体系中层下浓度和反应性的差异引起的。本研究表明,tx -100稳定的MTBE-in-water微乳液是nadh电化学再生和nadh依赖性氧化还原酶催化水不溶性底物电酶转化的合适介质。
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引用次数: 0
Structure and Volumetric Properties of Aqueous 1,4-Dioxane Solutions: Molecular Dynamics Simulation 1,4-二氧六环水溶液的结构和体积性质:分子动力学模拟
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c03573
Anton V. Vedkal, Evgenii D. Kadtsyn, Nikolai N. Medvedev

Using molecular dynamics simulations, we investigatestructuralchanges in aqueous 1,4-dioxane solutions over the entire concentrationrange. It is representative of polyesters, whose aqueous solutionsexhibit specific structural features related to their aprotic natureand molecular structure. When constructing the models, we employ asimple method to modify intermolecular interactions in solution byscaling the partial charges on dioxane atoms depending on concentration.The analysis of the models is carried out using both standard methods(the calculation of radial distribution functions, the structure factor,and the analysis of hydrogen bonds) and a new approach that involvescalculating the intrinsic volumes of the solution components. Jointconsideration of the data obtained provides a picture of the structureof this solution and clarifies and complements existing concepts discussedin experimental and theoretical works. We discuss the significantheterogeneity of the water microphase and the relative homogeneityof the dioxane microphase. We also show that the negative excess volumeof the solution is due to a structural property of water.

利用分子动力学模拟,我们研究了1,4-二氧六环水溶液在整个浓度范围内的结构变化。它是聚酯的代表,其水溶液表现出与其非质子性质和分子结构相关的特定结构特征。在构建模型时,我们采用了一种简单的方法,通过缩放二氧六环原子上的部分电荷来改变溶液中的分子间相互作用。模型的分析使用两种标准方法(径向分布函数的计算,结构因子和氢键的分析)和一种涉及计算溶液组分的固有体积的新方法进行。对所获得的数据的共同考虑提供了该解决方案结构的图片,并澄清和补充了实验和理论工作中讨论的现有概念。我们讨论了水微相的显著非均匀性和二氧六环微相的相对均匀性。我们还表明,溶液的负超额体积是由于水的结构性质。
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引用次数: 0
Collective Microscopic Dynamics in Aqueous LiTFSI from Dilute to Water-in-Salt Electrolytes: Insights from Quadrupolar NMR Relaxation and Molecular Simulations 从稀到盐中水电解质的LiTFSI水溶液的集体微观动力学:来自四极核磁共振弛豫和分子模拟的见解
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-28 DOI: 10.1021/acs.jpcb.6c04931
Marinella de Giovanetti, Matthieu Wolf, Iurii Chubak, Anne-Laure Rollet, Benjamin Rotenberg

The dynamics in electrolytes evolve dramatically withconcentration,from dilute solutions to water-in-salt electrolytes (WISE). NMR relaxationprovides insights into the local collective dynamics around specificnuclei, complementary to macroscopic properties such as conductivityand viscosity, but modeling is necessary to interpret experimentsin terms of microscopic motion. Here, we combine first-principlescalculations, classical molecular dynamics simulations, and experimentalmeasurements to investigate the microscopic origin of the quadrupolarrelaxation of 7Li+ in aqueous LiTFSI from diluteto WISE. We show that the strong increase in relaxation rate withconcentration is dominated by a progressive slowing down of electricfield gradient fluctuations at the Li+ site. While theultrafast inertial contribution to the relaxation remains relativelyunchanged due to the persistent preferential coordination of Li+ by water over TFSI, the slow collective relaxation mode becomesincreasingly dominant in the concentrated regime. Further analysisreveals the emergence of long-lived dynamics characteristic of stronglycorrelated ionic environments. We show the central role of the bulky,strongly coordinating TFSI anion, which promotes persistent Li–TFSIassociations, reduced ion mobility, and enhanced collective structuralrelaxation. Finally, we assess the relevance of the Stokes–Einstein–Debyemodel and demonstrate the breakdown of the simple hydrodynamic picture.

电解质的动力学随着浓度的变化而急剧变化,从稀溶液到盐中水电解质(WISE)。核磁共振弛豫提供了对特定核周围局部集体动力学的见解,补充了宏观性质,如电导率和粘度,但建模是必要的,以解释微观运动方面的实验。在这里,我们结合第一性原理计算、经典分子动力学模拟和实验测量来研究7Li+在LiTFSI水溶液中从稀释到WISE的四极弛豫的微观起源。我们发现,随着浓度的增加,弛豫速率的增加主要是由Li+位置的电场梯度波动的逐渐减慢所决定的。虽然由于水对Li+的持续优先配位,超快惯性对弛豫的贡献保持相对不变,但在集中状态下,慢集体弛豫模式变得越来越占主导地位。进一步的分析揭示了强相关离子环境的长寿命动力学特征的出现。我们展示了体积庞大、高度协调的TFSI阴离子的核心作用,它促进了li - TFSI的持续结合,降低了离子迁移率,增强了集体结构弛缓。最后,我们评估了stokes - einstein - debymodel的相关性,并演示了简单流体动力学图像的分解。
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引用次数: 0
Sensing Viscosity Decoupling and Dynamic Heterogeneity in Tetrabutylammonium Bromide:Polyol Deep Eutectic Solvents 四丁基溴化铵:多元醇深共晶溶剂的传感粘度解耦和动态非均质性
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c03764
Andrew J. Wendel, Gary A. Baker, G. J. Blanchard

We report the reorientationdynamics of the chromophores resorufinand perylene in tetrabutylammonium bromide (TBAB)-based deep eutecticsolvent (DES) systems formed with ethylene glycol (EG), 1,3-propanediol(PD), and 1,4-butanediol (BD) across a series of constituent ratiosfor each DES system. The reorientation dynamics of both chromophoresare largely independent of the bulk viscosity of the DESs, consistentwith viscosity decoupling and dynamic heterogeneity. This behaviorsuggests that the characteristic domains sampled by the chromophoresare larger than their hydrodynamic volumes. For the polar chromophoreresorufin, the results provide evidence for relatively strong interactionswith TBA+ in the TBAB:PD and TBAB:BD systems, but not inTBAB:EG, suggesting competitive interactions between hydrogen-bond-acceptor-richdomains and hydrogen-bond-donor-rich domains. TBAB-based DESs, therefore,differ from choline chloride-based DESs primarily because TBAB lacksthe primary alcohol functionality present in choline chloride.

我们报道了在四丁基溴化铵(TBAB)为基础的深度共析溶剂(DES)体系中,由乙二醇(EG)、1,3-丙二醇(PD)和1,4-丁二醇(BD)组成的发色团间苯二酚和苝的重定向动力学。两种发色团的重定向动力学在很大程度上与DESs的体粘度无关,与粘度解耦和动态非均质性一致。这种行为表明,由发色团取样的特征域大于它们的水动力体积。对于极性发色团,结果提供了与TBAB:PD和TBAB:BD系统中TBA+相对强相互作用的证据,而不是与inTBAB:EG系统,这表明富氢键受体结构域和富氢键给体结构域之间存在竞争性相互作用。因此,基于TBAB的脱氢醚与基于氯化胆碱的脱氢醚不同,主要是因为TBAB缺乏氯化胆碱中存在的原醇功能。
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引用次数: 0
A Transferable Four-Tier Decision Architecture for Gas Solubility Prediction in Ionic Liquids 离子液体气体溶解度预测的可转移四层决策体系结构
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-23 DOI: 10.1021/acs.jpcb.6c05017
Jiaping Zhou, Yang Lei, Hong Huang, Yuqiu Chen

We develop a transferable, physics-inspired feature engineeringframework that encodes knowledge of solvation thermodynamics, electrostaticinteractions, free-volume effects, and acid–base chemistrydirectly into the input representation, ensuring that the model learnscausal physical relationships rather than data set-specific artifacts.Through a four-step ablation protocol under GroupKFold cross-validation,where generalization is evaluated on entirely unseen ionic liquid(cation + anion)─gas compositional triplets, we identify aPareto-optimal Thermodynamic + Electrostatic model. Critically, SHAPanalysis reveals that the model has autonomously learned a four-tierdecision architecture that mirrors established physicochemical hierarchies:a thermodynamic baseline, structure-mediated microtuning, an electrostaticbinary switch, and a phase-state classifier. The transferability ofthis architecture was further evaluated through zero-shot generalizationto three entirely unseen gases (C2H4, SO2, and N2), which span distinct regions of the physicochemicalinteraction spectrum and extend the evaluation beyond the gas chemistriesrepresented during training.

我们开发了一个可转移的,受物理启发的特征工程框架,将溶剂化热力学,静电相互作用,自由体积效应和酸碱化学的知识直接编码到输入表示中,确保模型学习因果物理关系,而不是数据集特定的工件。通过GroupKFold交叉验证下的四步消融方案,其中泛化评估完全看不见的离子液体(阳离子+阴离子)─气体组成三重体,我们确定了aparetooptimal热力学+静电模型。重要的是,SHAPanalysis揭示了该模型自主学习了一个四层决策架构,该架构反映了已建立的物理化学层次结构:热力学基线、结构介导的微调谐、静电二进制开关和相态分类器。通过零射击推广到三种完全看不见的气体(C2H4, SO2和N2),进一步评估了该体系结构的可转移性,这些气体跨越了物理化学相互作用谱的不同区域,并将评估扩展到训练期间所代表的气体化学之外。
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引用次数: 0
A Residue-Resolved Mechanism for Trapped-Twist Spectral Tuning in Cyanobacteriochromes 蓝细菌中捕获扭曲光谱调谐的残留物分解机制
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-29 DOI: 10.1021/acs.jpcb.6c05208
Shun Kohase, Kazuhiro J. Fujimoto, Rei Narikawa, Takeshi Yanai

Cyanobacteriochromes (CBCRs) are bilin-binding photoreceptorsthatphotoconvert between long-lived, thermally stable states; in the red/greensubfamily, photoexcitation converts the red-absorbing Pr state to the green-absorbing Pg state with a large blueshift. Here we quantify this Pr–Pg separationusing quantum-mechanical/molecular-mechanical geometry optimizationand wave function-based excited-state calculations. Calculated spectrareproduce the Pr–Pg trend and show thatthe shift is dominated by a Pg-specific increase in phycocyanobilinA–B inter-ring torsion, which truncates π-conjugationand widens the HOMO–LUMO gap. Protein electrostatics red-shiftsboth states similarly and thus does not set the Pr–Pg gap. Residue–chromophore interaction energies revealstate-dependent rewiring: Trp655 dominates in Pr and regulatesthe C–D dihedral orientation, whereas in Pg thisrole shifts to Ile691, and Thr658 becomes a major Pg-specificstabilizer acting at the A–B linkage. These results establishtrapped-twist tuning as a geometry-driven mechanism with residue-levelhandles for engineering CBCR absorption.

蓝藻色素(CBCRs)是十亿蛋白结合的光感受器,在长寿命,热稳定状态之间进行光转换;在红/绿亚族中,光激发将吸收红色的Pr态转变为吸收绿色的Pg态,并伴有较大的蓝移。在这里,我们使用量子力学/分子力学几何优化和基于波函数的激发态计算来量化这种Pr-Pg分离。计算得到的光谱显示了Pr-Pg的变化趋势,并表明这种变化主要是由pg特异性的藻蓝billina - b环间扭转的增加所主导,从而截断π共轭并扩大HOMO-LUMO间隙。蛋白质静电作用类似地红移这两种状态,因此不会设置Pr-Pg间隙。残基-发色团相互作用能揭示了依赖于状态的重连接:Trp655在Pr中占主导地位并调节C-D二面体取向,而在Pg中这一作用转移到Ile691, Thr658成为主要的Pg特异性稳定剂,作用于a - b连锁。这些结果确定了捕获扭转调谐作为一种几何驱动机制,具有残余水平手柄,用于工程CBCR吸收。
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引用次数: 0
Data-Driven Molecular Design of TFC Membrane Monomers with Reduced PFAS Affinity 降低PFAS亲和度的TFC膜单体的数据驱动分子设计
IF 3.2 2区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2026-10-08 Epub Date: 2026-09-22 DOI: 10.1021/acs.jpcb.6c04561
Yangyang Wu, Shuoshi Liu, Xin Tong

Per- and polyfluoroalkyl substances (PFAS) are persistentaquaticcontaminants that challenge nanofiltration (NF) and reverse osmosis(RO) treatment, particularly when trace-level permeation compromiseswater-quality goals. Beyond steric and electrostatic exclusion, PFAStransport through thin-film composite (TFC) selective layers can beinfluenced by solute-membrane affinity and partition-mediated diffusion.Here, we developed an integrated quantum-chemical and interpretablemachine-learning framework to identify monomer-level features associatedwith weak PFAS binding. A data set of 5,265 complexes was constructedby pairing 39 TFC membrane-relevant monomers with 135 PFAS fragments.Density functional theory and energy decomposition analysis were usedto quantify interaction energies, and a Bayesian-optimized LightGBMmodel captured the monomer-PFAS fragment interaction landscape. SHAPand causal discovery revealed a synergistic dual mechanism: globalpolarity matching and dipole polarization drive long-range approach,while local electrostatic anchoring between PFAS oxygens and monomerhydrogens dictates interfacial orbital overlap. Clustering separatedweak-binding, fluorinated-tail-dominated complexes from stronger-binding,polar-headgroup-dominated complexes, highlighting the importance ofPFAS functional groups in interfacial association. Cross-attention-basedmotif analysis identified nitrogen-containing aliphatic-chain structuresas low-affinity candidates. Additional quantum-chemical validationwith PFOA and PFOS supported their weak, dispersion-dominated interactions.This work provides molecular design guidance for TFC polymeric membraneswith reduced PFAS sorption tendency.

全氟和多氟烷基物质(PFAS)是持续存在的水中污染物,对纳滤(NF)和反渗透(RO)处理构成挑战,特别是当微量渗透影响水质目标时。除了空间和静电排斥外,pfastrtransport通过薄膜复合材料(TFC)选择层还会受到溶质膜亲和性和分割介导扩散的影响。在这里,我们开发了一个集成的量子化学和可解释的机器学习框架,以识别与弱PFAS结合相关的单体水平特征。通过将39个TFC膜相关单体与135个PFAS片段配对,构建了5,265个配合物的数据集。利用密度泛函数理论和能量分解分析来量化相互作用能,并利用贝叶斯优化的LightGBMmodel捕捉了单体- pfas片段相互作用的景观。SHAPand因果发现揭示了协同的双重机制:整体极性匹配和偶极极化驱动远程接近,而PFAS氧和单体氢之间的局部静电锚定决定了界面轨道重叠。聚类将弱结合、氟化尾主导的配合物与强结合、极性头基主导的配合物分开,突出了pfas官能团在界面结合中的重要性。交叉注意基序分析鉴定含氮脂肪链结构为低亲和候选者。对全氟辛烷磺酸和全氟辛烷磺酸的量子化学验证支持了它们弱的、以色散为主的相互作用。这项工作为降低PFAS吸附倾向的TFC聚合物膜的分子设计提供了指导。
{"title":"Data-Driven Molecular Design of TFC Membrane Monomers with Reduced PFAS Affinity","authors":"Yangyang Wu,&nbsp;Shuoshi Liu,&nbsp;Xin Tong","doi":"10.1021/acs.jpcb.6c04561","DOIUrl":"https://doi.org/10.1021/acs.jpcb.6c04561","url":null,"abstract":"<p>Per- and polyfluoroalkyl substances (PFAS) are persistentaquaticcontaminants that challenge nanofiltration (NF) and reverse osmosis(RO) treatment, particularly when trace-level permeation compromiseswater-quality goals. Beyond steric and electrostatic exclusion, PFAStransport through thin-film composite (TFC) selective layers can beinfluenced by solute-membrane affinity and partition-mediated diffusion.Here, we developed an integrated quantum-chemical and interpretablemachine-learning framework to identify monomer-level features associatedwith weak PFAS binding. A data set of 5,265 complexes was constructedby pairing 39 TFC membrane-relevant monomers with 135 PFAS fragments.Density functional theory and energy decomposition analysis were usedto quantify interaction energies, and a Bayesian-optimized LightGBMmodel captured the monomer-PFAS fragment interaction landscape. SHAPand causal discovery revealed a synergistic dual mechanism: globalpolarity matching and dipole polarization drive long-range approach,while local electrostatic anchoring between PFAS oxygens and monomerhydrogens dictates interfacial orbital overlap. Clustering separatedweak-binding, fluorinated-tail-dominated complexes from stronger-binding,polar-headgroup-dominated complexes, highlighting the importance ofPFAS functional groups in interfacial association. Cross-attention-basedmotif analysis identified nitrogen-containing aliphatic-chain structuresas low-affinity candidates. Additional quantum-chemical validationwith PFOA and PFOS supported their weak, dispersion-dominated interactions.This work provides molecular design guidance for TFC polymeric membraneswith reduced PFAS sorption tendency.</p>","PeriodicalId":60,"journal":{"name":"The Journal of Physical Chemistry B","volume":"130 40","pages":"10771–10782"},"PeriodicalIF":3.2,"publicationDate":"2026-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149130655","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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