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Characterization of drug-resistant Streptococcus spp. from food and human sources and in vitro antibacterial assessment of an oregano nanoemulsion 食物和人源耐药链球菌的鉴定及牛至纳米乳的体外抗菌评价
4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-05-18 DOI: 10.1186/s13213-026-01857-7
Nady Khairy Elbarbary, Neveen M. Abdelmotilib, Marwa O. Abd El-Halim, Doaa A. Abdallah, Yehia Hazzazi, Mari Sumayli, Ramadan Taha, Latifa Al Husnain, Muneera D. F. Alkahtani, Ahmed Ezzat Ahmed, Sohaila F. El-Hawary, Marwa M. Abdallah, Basma Gamal
Abstract Objectives This study aimed to characterize drug-resistant Streptococcus spp. isolated from food and human sources in Upper Egypt, focusing on their virulence and antimicrobial resistance profiles, and to evaluate the in vitro antibacterial activity of an oregano essential oil nanoemulsion. Materials and methods A total of 440 food and human samples were collected in Aswan, Upper Egypt, and screened using conventional microbiological methods. Molecular confirmation was performed by detecting the tuf gene, followed by species identification using the 16 S rRNA and spn9802 genes. Selected virulence ( scpB , Rib , Lmb , and cylE ) and resistance ( aac6-aph2 , pbp1A , and tetO ) genes were detected by PCR. Antimicrobial susceptibility testing and the multiple antibiotic resistance (MAR) index were determined. The antibacterial activity of the oregano nanoemulsion was assessed using inhibition zone assays at varying concentrations. Results Streptococcus spp. were detected in 22% of samples, with higher prevalence in throat swabs (34%) and raw milk (21.9%). Predominant species included S. agalactiae , S. pyogenes , S. dysgalactiae , S. pneumoniae , and S. uberis . Virulence genes were variably distributed, with scpB (33%) and cylE (31.8%) most frequent. Resistance genes were moderately detected, particularly tetO (21.2%). Most isolates were resistant to β-lactams but fully susceptible to ceftaroline and fosfomycin; the mean MAR index was 0.477. The oregano nanoemulsion showed concentration-dependent antibacterial activity. Conclusion Drug-resistant Streptococcus spp. from food and human sources in Upper Egypt carry important virulence and resistance determinants. The oregano essential oil nanoemulsion demonstrated promising in vitro antibacterial activity, suggesting potential as a natural antimicrobial; however, further in vivo and safety studies are required.
摘要:目的研究上埃及地区从食物和人体内分离的耐药链球菌,研究其毒力和耐药性特征,并评价牛至精油纳米乳的体外抗菌活性。材料与方法在上埃及阿斯旺地区采集440份食品和人体样本,采用常规微生物学方法进行筛选。通过检测tuf基因进行分子鉴定,然后利用16s rRNA和spn9802基因进行物种鉴定。选择毒力基因(scpB、Rib、Lmb和cycle)和抗性基因(aac6-aph2、pbp1A和tetO)进行PCR检测。进行药敏试验和多重抗生素耐药(MAR)指数测定。采用抑菌带法测定不同浓度牛至纳米乳的抑菌活性。结果22%的样本中检出链球菌,其中咽拭子和原料奶的检出率较高,分别为34%和21.9%。优势种包括无乳链球菌、化脓性链球菌、无乳链球菌、肺炎链球菌和uberis。毒力基因分布不均匀,以scpB(33%)和cycle(31.8%)最为常见。耐药基因较多,以tetO为主(21.2%)。多数菌株对β-内酰胺类耐药,但对头孢他林和磷霉素完全敏感;平均MAR指数为0.477。牛至纳米乳具有浓度依赖性的抗菌活性。结论上埃及地区食物和人源耐药链球菌具有重要的毒力和耐药性决定因素。牛至精油纳米乳具有良好的体外抗菌活性,具有天然抗菌剂的潜力;然而,还需要进一步的体内和安全性研究。
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引用次数: 0
Phytochemical characterization of Paenarthrobacter nicotinovorans YYH-1 from Epimedium rhizosphere and its antioxidant-mediated in vitro activity against premature ovarian failure 淫羊藿根际嗜烟多菌YYH-1的植物化学特性及其抗卵巢早衰的体外抗氧化活性
4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-07 DOI: 10.1186/s13213-025-01823-9
H. L. Li, Xian Tao, Hongji Zhang, Yafei Zhang, Qiancheng Liang, Qing Liu, Lan Luo, Yan Wang, Juan Yang, Xiaosheng Yang, Mei Fang Peng, Liangqun LI
The aim of this study was to isolate and identify a nicotine-degrading Paenarthrobacter nicotinovorans strain from the Epimedium rhizosphere, characterize its secondary metabolites, and evaluate its potential antioxidant activity against premature ovarian failure (POF). By exploring the bioactive properties of this rhizosphere microorganism, the research sought to uncover new insights into the functional roles of plant-associated microbes and discover potential natural agents for treating oxidative stress-related diseases. A strain designated YYH-1 was isolated from the E. rhizosphere and identified through morphological observations and 16S rRNA gene sequencing. Ultra-performance liquid chromatography-high resolution mass spectrometry (UPLC-HRMS) combined with GNPS molecular networking was employed to profile the chemical components of the ethyl acetate extract from YYH-1 fermentation broth. In vitro experiments utilized the human ovarian granulosa cell line (KGN) to assess the extract’s effect on D-galactose-induced cellular senescence, measuring the activity of superoxide dismutase (SOD) as an indicator of antioxidant capacity. Additionally, molecular docking was performed to elucidate the interaction mechanisms between key compounds and the Nrf2 signaling pathway. The isolate was confirmed as P. nicotinovorans YYH-1. Chemical profiling identified 21 secondary metabolites, including flavonoids, phenylpropanoids, alkaloids, fatty acids, and amino acid derivatives. In vitro studies demonstrated that the YYH-1 extract significantly mitigated D-galactose-induced cellular senescence in KGN cells and effectively upregulated superoxide dismutase (SOD) activity, which increased by 50.94%, 48.27%, and 38.01% respectively compared with that in the Model group.. Molecular docking analysis revealed that 8-prenylnaringenin, a major compound in the extract, could activate the Nrf2 signaling pathway by stably binding to Keap1 and Nrf2 receptors. This study represents the first report of P. nicotinovorans in the E. rhizosphere. The strain exhibits the potential to produce diverse bioactive secondary metabolites, and its extract demonstrates antioxidant activity against POF through the activation of the Nrf2 pathway. These findings expand our understanding of rhizosphere microbial functions and provide a basis for the development of natural anti-aging therapies targeting oxidative stress-related disorders.
本研究的目的是从淫羊藿根际分离鉴定一株可降解尼古丁的nicotinovorans单节杆菌,对其次级代谢产物进行鉴定,并评价其抗卵巢早衰(POF)的潜在抗氧化活性。通过探索这种根际微生物的生物活性特性,该研究试图揭示植物相关微生物的功能作用的新见解,并发现治疗氧化应激相关疾病的潜在天然药物。通过形态学观察和16S rRNA基因测序,分离得到一株YYH-1菌株。采用超高效液相色谱-高分辨率质谱(UPLC-HRMS)结合GNPS分子网络技术对YYH-1发酵液乙酸乙酯提取物的化学成分进行了分析。体外实验利用人卵巢颗粒细胞系(KGN),通过测定超氧化物歧化酶(SOD)活性作为抗氧化能力的指标,评估提取物对d -半乳糖诱导的细胞衰老的影响。此外,通过分子对接来阐明关键化合物与Nrf2信号通路之间的相互作用机制。经鉴定,该分离物为烟草卟啉菌YYH-1。化学分析鉴定出21种次生代谢物,包括类黄酮、苯丙素、生物碱、脂肪酸和氨基酸衍生物。体外研究表明,YYH-1提取物可显著缓解d -半乳糖诱导的KGN细胞衰老,有效上调超氧化物歧化酶(SOD)活性,较模型组分别提高50.94%、48.27%和38.01%。分子对接分析表明,8-prenylnaringenin是提取物中的主要化合物,可通过稳定结合Keap1和Nrf2受体激活Nrf2信号通路。本研究首次报道了烟草假单胞菌在根际的存在。该菌株显示出产生多种生物活性次生代谢物的潜力,其提取物通过激活Nrf2途径显示出抗POF的活性。这些发现扩大了我们对根际微生物功能的理解,并为开发针对氧化应激相关疾病的天然抗衰老疗法提供了基础。
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引用次数: 0
Assessment of resistance profiles and virulence genes in Escherichia coli from fresh vegetables: implications for food safety and consumer health in Ogun State, Nigeria. 评估新鲜蔬菜中大肠杆菌的耐药谱和毒力基因:对尼日利亚奥贡州食品安全和消费者健康的影响
IF 5.1 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2026-01-01 Epub Date: 2026-07-14 DOI: 10.1186/s13213-026-01864-8
Itohan Ebunoluwa Abatan, Lenis Saweda O Liverpool-Tasie, Taofik Akinyemi Shittu, Adebukunola Mobolaji Omemu, Muinah Adenike Fowora, Oluwakemi Abosede Ojo, Oluwasola Abayomi Adelusi, Adewale Olusegun Obadina

Purpose: Fresh vegetables are essential human dietary components but are increasingly implicated in foodborne infections caused by Escherichia coli. Contamination may occur during cultivation, irrigation, handling, and retail display, and the presence of pathogenic or antimicrobial-resistant E. coli poses significant public health risks. Despite widespread vegetable consumption in Ogun State, Nigeria, limited data exist on the resistance and virulence characteristics of E. coli in these foods. This study therefore assessed antimicrobial resistance profiles and virulence genes in E. coli isolated from tomatoes, carrots, and cucumbers sold across three senatorial districts of Ogun State.

Method: A cross-sectional survey was conducted between March and October 2023, yielding 509 vegetable samples collected aseptically during three visits. Samples were enriched, cultured on MacConkey agar, and identified using standard microbiological methods. Thereafter, antimicrobial susceptibility testing was performed using the Kirby-Bauer disc diffusion method. Genomic DNA was extracted from the microbe, followed by Polymerase Chain Reaction (PCR) to detect key virulence (stx1, stx2, eae) and resistance (blaSHV, blaTEM, blaCTX, NDM, IMP, KPC, OXA-48) genes.

Results: Of the 509 vegetables analysed, 73 (14.4%) tested positive for E. coli: 34 (14.4%) from tomatoes, 27 (24.1%) from carrots, and 12 (7.5%) from cucumbers. Carrots from Ogun Central had an E. coli contamination rate of 9.8% (11/112), while cucumbers from Ogun East had a contamination rate of 1.3% (2/160). Among 34 E. coli isolates confirmed and recovered from the vegetables, 12 originated from Ogun Central, 9 from Ogun East, and 13 from Ogun West. Isolates showed resistance to all antibiotics except gentamicin and levofloxacin. Virulence genes stx1 and stx2 were detected in 3 and 2 isolates, respectively. Also, 47% of isolates carried resistance genes, and 15% carried virulence genes.

Conclusion: Fresh vegetables across the three senatorial districts of Ogun State were contaminated with E. coli, with 15% of isolates carrying virulence genes and 47% carrying antimicrobial resistance genes. The low detection of virulence genes indicates relatively low pathogenic potential, as higher levels typically signal greater infection risk. However, the presence of both virulence and resistance genes still highlights important public health concerns. These findings emphasize the need for improved farming hygiene, stricter antimicrobial regulation, and stronger surveillance.

目的:新鲜蔬菜是人类必不可少的饮食成分,但越来越多地与大肠杆菌引起的食源性感染有关。污染可能发生在种植、灌溉、处理和零售展示过程中,致病性或抗微生物耐药性大肠杆菌的存在构成重大的公共卫生风险。尽管尼日利亚奥贡州广泛食用蔬菜,但关于这些食物中大肠杆菌的耐药性和毒力特征的数据有限。因此,本研究评估了从奥贡州三个参议院选区销售的西红柿、胡萝卜和黄瓜中分离的大肠杆菌的抗菌素耐药性谱和毒力基因。方法:于2023年3月至10月进行横断面调查,三次无菌采集蔬菜样品509份。对样品进行富集,在麦康基琼脂上培养,并使用标准微生物学方法进行鉴定。然后采用Kirby-Bauer盘片扩散法进行药敏试验。提取微生物基因组DNA,采用聚合酶链反应(PCR)检测关键毒力基因(stx1、stx2、eae)和耐药基因(blaSHV、blaTEM、blaCTX、NDM、IMP、KPC、OXA-48)。结果:在509种蔬菜中,73种(14.4%)检测出大肠杆菌阳性:番茄34种(14.4%),胡萝卜27种(24.1%),黄瓜12种(7.5%)。奥贡中部胡萝卜的大肠杆菌污染率为9.8%(11/112),而奥贡东部黄瓜的污染率为1.3%(2/160)。在从蔬菜中确认和回收的34株大肠杆菌中,12株来自奥贡中部,9株来自奥贡东部,13株来自奥贡西部。分离株对除庆大霉素和左氧氟沙星外的所有抗生素均有耐药性。分别在3株和2株分离株中检测到stx1和stx2毒力基因。此外,47%的分离株携带抗性基因,15%携带毒力基因。结论:奥贡州3个参议院区新鲜蔬菜均存在大肠杆菌污染,其中15%的分离株携带毒力基因,47%携带耐药基因。毒性基因的低检测表明致病潜力相对较低,因为较高的水平通常表明感染风险较大。然而,毒力和抗性基因的存在仍然突出了重要的公共卫生问题。这些发现强调了改善农业卫生、严格抗微生物法规和加强监测的必要性。
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引用次数: 0
Bacteriocin ZJQ2-1 produced by Pediococcus pentosaceus from traditional sweet wine koji: purification, characterization, and application in fermented glutinous rice 从传统甜酒曲中提取戊sacpediococcus生产的细菌素ZJQ2-1:纯化、表征及在发酵糯米中的应用
4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-07-22 DOI: 10.1186/s13213-025-01810-0
Huojian Zheng, Yongqi Yang, Cancan Qi, Qiuxiang Cheng, Qin Wang, Liping Wang
Abstract Background Fermented glutinous rice has low alcohol content and abundant nutrients, but it is easily contaminated by Bacillus cereus during production and preservation. This study aimed to inhibit the spoilage bacterium Bacillus cereus in the fermented glutinous rice by bacteriocin-producing lactic acid bacteria and its bacteriocin. Results Bacteriocin-producing Pediococcus pentosaceus JQ2-1 was isolated from traditional sweet wine koji and its bacteriocin ZJQ2-1 was purified by ethyl acetate extraction, cation exchange chromatography, gel chromatography and reversed-phase high-performance liquid chromatography (RP-HPLC). Bacteriocin ZJQ2-1 was identified by HPLC–MS/MS, and the results showed it had a molecular weight of 1204.43 Da and the amino acid sequence was KIGLFGGAGVGKT. Further characterization analysis showed that the bacteriocin ZJQ2-1 was thermostable (30 min, 121°C), highly pH stable (2–10), sensitive to protease and exhibited broad-spectrum antibacterial ability against Gram-positive and Gram-negative bacteria. The count of Bacillus cereus in the fermented glutinous rice that was inoculated with P. pentosaceus JQ2-1 and bacteriocin ZJQ2-1 decreased by about 80% and 64% of that in the initial stage, respectively. Conclusions These results indicated the potential of P. pentosaceus JQ2-1 and bacteriocin ZJQ2-1 as a bio-preservative in glutinous rice products.
摘要背景发酵糯米酒精含量低,营养成分丰富,但在生产和保存过程中容易受到蜡样芽孢杆菌的污染。本研究旨在利用产生细菌素的乳酸菌及其细菌素对发酵糯米中的蜡样芽孢杆菌进行抑制。结果从传统甜酒曲中分离得到产细菌素的戊糖Pediococcus pentosaceus JQ2-1,并通过乙酸乙酯萃取、阳离子交换层析、凝胶层析和反相高效液相色谱(RP-HPLC)对细菌素进行了纯化。细菌素ZJQ2-1经HPLC-MS /MS鉴定,分子量为1204.43 Da,氨基酸序列为KIGLFGGAGVGKT。进一步的表征分析表明,细菌素ZJQ2-1具有耐热性(30 min, 121℃)、高pH稳定性(2-10℃)、对蛋白酶敏感、对革兰氏阳性菌和革兰氏阴性菌均具有广谱抗菌能力。接种P. pentosaceus JQ2-1和细菌素ZJQ2-1的发酵糯米中蜡样芽孢杆菌的数量分别比发酵初期减少了约80%和64%。结论戊糖假单胞菌JQ2-1和细菌素ZJQ2-1具有作为糯米制品生物防腐剂的潜力。
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引用次数: 1
Review on effect of fermentation on physicochemical properties, anti-nutritional factors and sensory properties of cereal-based fermented foods and beverages 发酵对谷物类发酵食品和饮料的理化特性、抗营养因子和感官特性的影响综述
IF 3 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-09-16 DOI: 10.1186/s13213-024-01763-w
Daniel Asfaw Kitessa
Fermentation is the oldest biotechnology in which a metabolic process carried out without the involvement of oxygen. It is one of the food processing methods that improve the nutrient contents and sensorial properties with potentially reducing or eliminating pathogenic microorganisms and natural toxins. The aim of this review is to compare, contrast and summarize the scientific data on the effect of fermentation on physicochemical properties, anti-nutritional factors and sensory properties of cereal-based fermented foods and beverages. The results of this review showed that fermentation improves the nutritional value of some proximate composition such as crude protein and fat contents, while decreases the carbohydrate and crude fiber contents. It also improves the bioavailability, antioxidant activities and sensory properties of cereal-based foods and beverages. This review concluded that fermentation improves the nutritional quality of proximate composition, bioavailability of minerals and phytochemicals, and decrease the anti-nutritional factors of cereal-based fermented foods and beverages.
发酵是一种最古老的生物技术,它是在没有氧气参与的情况下进行的新陈代谢过程。它是食品加工方法之一,能提高营养成分和感官特性,并有可能减少或消除病原微生物和天然毒素。本综述旨在比较、对比和总结有关发酵对谷物类发酵食品和饮料的理化特性、抗营养因子和感官特性的影响的科学数据。综述结果表明,发酵提高了某些近似成分的营养价值,如粗蛋白和脂肪含量,同时降低了碳水化合物和粗纤维含量。发酵还能提高谷物食品和饮料的生物利用率、抗氧化活性和感官特性。本综述认为,发酵可提高谷物类发酵食品和饮料近似成分的营养质量、矿物质和植物化学物质的生物利用率,并降低抗营养因子。
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引用次数: 0
Antimicrobial metabolites from Probiotics, Pleurotus ostreatus and their co-cultures against foodborne pathogens isolated from ready-to-eat foods 益生菌、牛肝菌及其共培养物对从即食食品中分离出的食源性致病菌的抗菌代谢产物
IF 3 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-31 DOI: 10.1186/s13213-024-01776-5
Oluwaferanmi Esther Bamisi, Clement Olusola Ogidi, Bamidele Juliet Akinyele
The incidence of foodborne pathogens in ready- to-eat (RTE) can be attributed to various foodborne diseases. Most of the isolated microorganisms from RTE foods are resistant to common antibiotics and thus, resulted to treatment failure when commercially available antibiotics are administered. However, the secondary metabolites secreted by microorganisms can serve as alternative therapy that are reliable and safe. Secondary metabolites obtained from mono- and co-culture microorganisms can inhibit the growth of antibiotic-resistant microorganisms. Bioactive compounds in the secreted metabolites can be identified and utilized as sources of new antibiotics. In this study, antimicrobial activity of secondary metabolites from Lactobacillus fermentum, Saccharomyces cerevisiae, Pleurotus ostreatus, and their co-cultures were tested against foodborne pathogens isolated from RTE foods using agar well diffusion. The bioactive compounds in the metabolites were identified using gas chromatography-mass spectrometry. From a total of 100 RTE foods examined, Salmonella enterica, Shigella dysenteriae, Escherichia coli, Klebsiella pneumoniae (subsp ozaenae), Pseudomonas fluorescens, Clostridium perfringes, Bacillus cereus, Listeria monocytogens, and Staphylococcus aureus, Penicillium chrysogenum, Aspergillus flavus, and Aspergillus niger were isolated and displayed multiple antibiotic resistance. The secondary metabolites secreted by co-culture of L. fermentum + P. ostreatus + S. cerevisiae, and co-culture of P. ostreatus + S. cerevisiae have the highest (P ≤ 0.05) zones of inhibition (23.70 mm) and (21.10 mm) against E. coli, respectively. Metabolites from mono-cultured L. fermentum, P. ostreatus, and S. cerevisiae showed zones of inhibition against indicator microorganisms with values ranging from 8.80 to 11.70 mm, 9.00 to 14.30 mm, and 9.30 to 13.00 mm, respectively. Some of the bioactive compounds found in the metabolites of co-cultured microorganisms were alpha-linolenic acid (25.71%), acetic acid 3-methylbutyl ester (13.83%), trans-squalene (12.39%), pentadecylic acid (11.68%), 3- phenyllactic acid (30.13%), linolelaidic acid methyl ester (15.63%), and 4-O-methylmannose (53.74%). RTE foods contain multiple antibiotics resistance pathogens. The pronounced antimicrobial activity of the secondary metabolites against microorganisms from RTE foods could be attributed to the presence of bioactive compounds in the metabolites. These metabolites can be exploited as alternative food preservatives, biopharmaceuticals and can be used towards better health delivering systems.
即食食品中的食源性病原体可导致各种食源性疾病。从即食食品中分离出的大多数微生物对普通抗生素具有抗药性,因此,使用市售抗生素治疗时会导致治疗失败。然而,微生物分泌的次级代谢物可作为可靠、安全的替代疗法。从单培养和共培养微生物中获得的次生代谢物可以抑制抗生素耐药微生物的生长。分泌代谢物中的生物活性化合物可被鉴定并用作新抗生素的来源。本研究采用琼脂井扩散法测试了发酵乳杆菌、酿酒酵母、牡蛎及其共培养物的次生代谢物对从即食食品中分离出的食源性致病菌的抗菌活性。代谢物中的生物活性化合物采用气相色谱-质谱法进行鉴定。在检测的 100 种即食性食品中,分离出了肠炎沙门氏菌、痢疾志贺氏菌、大肠埃希氏菌、肺炎克雷伯菌(大肠杆菌亚种)、荧光假单胞菌、产气荚膜梭菌、蜡样芽孢杆菌、单核细胞李斯特菌、金黄色葡萄球菌、金黄色青霉、黄曲霉和黑曲霉,并显示出多种抗生素耐药性。L. fermentum + P. ostreatus + S. cerevisiae 共培养物和 P. ostreatus + S. cerevisiae 共培养物分泌的次生代谢物对大肠杆菌的抑菌作用分别为(23.70 毫米)和(21.10 毫米),抑菌面积最大(P ≤ 0.05)。单培养 L. fermentum、P. ostreatus 和 S. cerevisiae 的代谢物对指示微生物的抑制区分别为 8.80 至 11.70 毫米、9.00 至 14.30 毫米和 9.30 至 13.00 毫米。在共培养微生物的代谢产物中发现的一些生物活性化合物有:α-亚麻酸(25.71%)、乙酸 3-甲基丁酯(13.83%)、反式角鲨烯(12.39%)、十五烷酸(11.68%)、3-苯基乳酸(30.13%)、亚油酸甲酯(15.63%)和 4-O-甲基甘露糖(53.74%)。即食食品中含有多种抗生素耐药性病原体。次生代谢物对来自即食食品的微生物具有明显的抗菌活性,这可能是因为代谢物中含有生物活性化合物。这些代谢物可用作替代食品防腐剂和生物制药,并可用于改善健康服务系统。
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引用次数: 0
Eco-friendly biotransformation of penicillin G by free and immobilized marine halophilic Bacillus pseudomycoides AH1 游离和固定海洋嗜卤杆菌 AH1 对青霉素 G 的生态友好型生物转化
IF 3 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-08-20 DOI: 10.1186/s13213-024-01774-7
Aida M. Farag, Hasnaa E-B. Ghonam, Aliaa M. El-Borai
Several antibiotics are partially metabolized by patients after administration and end up in municipal sewage systems. The fate of biodegradation in aquatic environments and the role of biodegradation in the development of bacterial resistance are poorly understood. Thus, as a crucial step in an environmental risk assessment, the biodegradability of many therapeutically significant antibiotics was investigated. A marine halophilic bacteria that degrades penicillin G (PEN-G) was isolated and identified based on morphology, physio-biochemical characteristics, and 16S rDNA sequences as Bacillus pseudomycoides AH1 (accession no. MF037698). The effects of various concentrations of PEN-G and carbon and nitrogen sources on the biotransformation ability at 30°C and pH 7.0 were evaluated. Cells grown in medium supplemented with glucose as an additional carbon source and yeast extract as a nitrogen source exhibited maximal PEN-G biotransformation efficiency and rate (71.678% ±1.28 and 2.99 mg/h, respectively). The culture conditions for B. pseudomycoides AH1 cells were optimized using a Plackett–Burman design (PBD). Six key determinants (p < 0.05) significantly affected the process outcome, as deduced by regression analysis of the PBD data, and modified MSM broth achieved PEN-G biotransformation efficiency (100%) under aerobic shaking conditions at 35°C, irrespective of HPLC analysis. Additionally, the present investigation could strongly support the application of immobilization approaches for the removal of PEN-G-contaminated environmental sites. To the best of the authors’ knowledge, this is the first detailed study on the efficient biotransformation of PEN-G by an alginate-bacteria system as a simple, green, and inexpensive process, as well as a promising method.
有几种抗生素在用药后会被患者部分代谢,最终进入城市污水系统。人们对生物降解在水生环境中的命运以及生物降解在细菌耐药性产生过程中的作用知之甚少。因此,作为环境风险评估的关键步骤,我们对许多具有重要治疗作用的抗生素的生物降解性进行了调查。根据形态学、物理生化特征和 16S rDNA 序列,分离并鉴定出一种可降解青霉素 G(PEN-G)的海洋嗜卤细菌--假丝酵母菌 AH1(登录号:MF037698)。在 30°C、pH 值为 7.0 的条件下,评估了不同浓度的 PEN-G、碳源和氮源对生物转化能力的影响。在添加葡萄糖作为额外碳源和酵母提取物作为氮源的培养基中生长的细胞表现出最高的 PEN-G 生物转化效率和速率(分别为 71.678% ±1.28 和 2.99 mg/h)。采用普拉克特-伯曼设计(PBD)对假丝酵母 AH1 细胞的培养条件进行了优化。通过对 PBD 数据进行回归分析,推断出六个关键决定因素(p < 0.05)对工艺结果有显著影响,改良的 MSM 肉汤在 35°C 好氧振荡条件下实现了 PEN-G 生物转化效率(100%),与 HPLC 分析结果无关。此外,本研究还为应用固定化方法清除受 PEN-G 污染的环境场地提供了有力支持。据作者所知,这是首次详细研究海藻酸盐-细菌系统对 PEN-G 的高效生物转化,这是一种简单、绿色、廉价的工艺,也是一种很有前景的方法。
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引用次数: 0
Characterization of nuvita biosearch center (NBC) isolated lactic acid bacteria strains from human origin and determination of growth kinetic profiles of selected cultures under bioreactor 努维塔生物研究中心(NBC)分离的人源乳酸菌菌株的特征和生物反应器下选定培养物生长动力学曲线的测定
IF 3 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-07-30 DOI: 10.1186/s13213-024-01772-9
Akif Emre Kavak, İnci Zent, Ezgi Metin Sağır, Gülistan Öncü, Feride İrem Şimşek
In recent years, there has been an increasing interest in the field of research into the isolation and characterization of probiotics in the prevention of diseases and the need to maintain the continuity of healthy microbiota. Therefore, the aim of this study is to isolate and identify bacteria found in maternal colostrum, breast milk, adult and infant feces, analyze possible probiotic potential, and reveal the developmental kinetics of selected strains. We isolated 40 bacterial species from 4 different sources and identified 19 bacteria in the form of bacilli through molecular biology and carried out studies with 11 of them. Five of the selected strains showed the better results considering bile salt resistance and ability to survive at different pH and antimicrobial effect. When the adhesion capacity in cell culture is examined, the better 2 strains are; Lactobacillus pontis ZZ6780 and Lactobacillus reuteri NBC2680 were selected and the growth kinetics of these strains were demonstrated at the 3 L bioreactor scale. Finally, the growth kinetics of selected strains were determined and the maximum specific growth rate of selected Lactobacillus pontis ZZ6780 and Lactobacillus reuteri NBC2680 was calculated as 0.412 h− 1 and 0.481 h− 1, respectively. In addition, the dry cell matter amounts were found to be and 4.45 g/L and 5.23 g/L, respectively. This study established the groundwork for the selection of safety probiotics for the development and application of LAB. It is thought that the two strains obtained as a result of this study can be considered as potential probiotic strains in the food, pharmaceutical and cosmetic industries.
近年来,人们对分离和鉴定益生菌以预防疾病的研究兴趣日益浓厚,并需要保持健康微生物群的连续性。因此,本研究旨在分离和鉴定母体初乳、母乳、成人和婴儿粪便中的细菌,分析可能的益生菌潜力,并揭示所选菌株的发育动力学。我们从 4 个不同来源分离出 40 种细菌,通过分子生物学鉴定出 19 种杆菌,并对其中 11 种进行了研究。其中 5 种菌株在耐胆盐性、不同 pH 值下的存活能力和抗菌效果方面表现较好。在研究细胞培养中的粘附能力时,选出了较好的两株菌株,即蓬状乳杆菌 ZZ6780 和雷特氏乳杆菌 NBC2680,并在 3 升生物反应器规模下对这些菌株的生长动力学进行了论证。最后,确定了所选菌株的生长动力学,并计算出所选庞氏乳杆菌 ZZ6780 和雷特氏乳杆菌 NBC2680 的最大特定生长速率分别为 0.412 h- 1 和 0.481 h- 1。此外,干细胞物质含量分别为 4.45 克/升和 5.23 克/升。这项研究为选择安全的益生菌开发和应用 LAB 奠定了基础。据认为,本研究获得的两株菌株可被视为食品、制药和化妆品行业的潜在益生菌株。
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引用次数: 0
Probiotic potential of lactic acid bacteria isolated from Ethiopian traditional fermented Cheka beverage 从埃塞俄比亚传统发酵切卡饮料中分离的乳酸菌的益生潜力
IF 3 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-07-23 DOI: 10.1186/s13213-024-01771-w
Dawit Albene, Niguse Kelile Lema, Getaneh Tesfaye, Addisu Fekadu Andeta, Kidist Ali, Awoke Guadie
: Lactic acid bacteria (LAB) are a cluster of microbes distributed in a variety of environments and have potential probiotic activity to improve human well-being. This study was aimed at assessing the probiotic potential of LAB isolated from Cheka, an Ethiopian traditionally fermented beverage. Pure isolates obtained from 16 Cheka samples from Konso (n = 8) and Derashe (n = 8) were characterized morphologically, biochemically, and physiologically by considering basic criteria to identify the LAB. The probiotics properties of the LAB were evaluated in vitro at low pH values (2.0 and 3.0), and two bile salt concentrations (0.3 and 0.5%) for 3 and 6 h. The 16 S rRNA gene sequencing was done using an ABI 3730xl sequencer, and the gene sequences were aligned. Of the 27 pure isolates, 11 isolates were proven to be LAB with non-motile, negative for catalase, and non-spore former characteristics. Based on cultural characteristics and sugar fermentation ability, the 11 isolates were assembled into the genera Lactobacillus (55%), Lactococcus (18%), Pediococcus (18%), and Leuconostoc (9%). At pH 3.0 and a bile salt concentration of 0.3%, isolate ChK-11 showed a better survival rate (97 and 94%) than other isolates [ChK-7 (93 and 80%) > ChD-5 (84 and 76%) > ChD-8 (46 and 36%) > ChK-4 (41 and 34%)] for 6 and 3 h, respectively. According to 16 S rRNA sequencing results, isolates ChK-11 and ChK-7 were found to be Weissella paramesenteroides and Leuconostoc pseudomesenteroides with sequence similarity of 99 and 91%, respectively. In the present study, probiotic LAB (Weissella paramesenteroides and Leuconostoc pseudomesenteroides) was successfully isolated and sequenced from Cheka samples. The findings of this in vitro study indicated that fermented beverages like Cheka are a source of the LAB with probiotic functional properties. Overall, Weissella paramesenteroides and Leuconostoc pseudomesenteroides isolates, which showed promising probiotic properties under in vitro conditions, can be used for starter culture development for the Cheka fermentation process.
:乳酸菌(LAB)是分布在各种环境中的微生物群,具有潜在的益生活性,可改善人类健康。本研究旨在评估从埃塞俄比亚传统发酵饮料 Cheka 中分离出来的 LAB 的益生菌潜力。通过考虑鉴定 LAB 的基本标准,对从 Konso(n = 8)和 Derashe(n = 8)的 16 个 Cheka 样品中获得的纯分离物进行了形态学、生物化学和生理学鉴定。在低 pH 值(2.0 和 3.0)和两种胆汁盐浓度(0.3% 和 0.5%)条件下,分别持续 3 小时和 6 小时,对 LAB 的益生菌特性进行了体外评估。在 27 个纯分离物中,有 11 个分离物被证明是 LAB,具有无运动性、过氧化氢酶阴性和无孢子的特征。根据培养特性和糖发酵能力,这 11 个分离物被归入乳酸杆菌属(55%)、乳球菌属(18%)、木薯球菌属(18%)和白念珠菌属(9%)。在 pH 值为 3.0 和胆盐浓度为 0.3% 的条件下,分离物 ChK-11 在 6 小时和 3 小时内的存活率(97% 和 94%)分别高于其他分离物[ChK-7(93% 和 80%)> ChD-5(84% 和 76%)> ChD-8(46% 和 36%)> ChK-4(41% 和 34%)]。根据 16 S rRNA 测序结果,分离物 ChK-11 和 ChK-7 被认定为 Weissella paramesenteroides 和 Leuconostoc pseudomesenteroides,其序列相似度分别为 99% 和 91%。本研究成功地从契卡样本中分离出益生菌 LAB(Weissella paramesenteroides 和 Leuconostoc pseudomesenteroides)并对其进行了测序。这项体外研究的结果表明,Cheka 等发酵饮料是具有益生菌功能特性的 LAB 的来源。总之,Weissella paramesenteroides 和 Leuconostoc pseudomesenteroides 分离物在体外条件下表现出良好的益生特性,可用于开发赤卡发酵过程中的启动培养物。
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引用次数: 0
Revealing the microbial composition changes and relationship with Fusarium caused by rot disease in the Crocus sativus L. 揭示番石榴腐烂病微生物组成的变化及其与镰刀菌的关系
IF 3 4区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2024-07-20 DOI: 10.1186/s13213-024-01770-x
Jia Song, Xiaoyuan Xi, Xiaodong Qian, Jing Li, Yuanyuan Tao, Liqin Li, Guifen Zhou
Rot disease caused by Fusarium poses a formidable threat to the growth of saffron (Crocus sativus L.), resulting in substantial damage to both yield and quality. It is paramount to delve into the root causes of rot disease in saffron to optimize both yield and quality. Existing preventive and treatment modalities have exerted deleterious effects on corms and the natural environment. Consequently, the quest for efficacious and eco-friendly methods such as biological control agents has become an urgent imperative. The disparate distribution of microbial communities between rhizospheric microorganisms and saffron serves as the foundational exploration for uncovering the underlying causes of rot disease. Samples from various saffron organs and rhizosphere soil were gathered, and the sequencing data from the microbial communities were interpreted using 16S rRNA and ITS gene sequencing methods. This facilitated an in-depth examination of the composition and changes of microorganisms in both healthy and diseased saffron plants. The findings indicated rot disease reduced the abundance and diversity of microorganisms in saffron, and the fungal co-occurrence networks were less stable and their communities were more sensitive to rot disease than the bacterial community. Fusarium was the predominant genus in diseased samples, accounting for 99.19% and 89.77% of the communities in diseased leaves and corms. With corms and leaves displaying heightened susceptibility to infection compared to other plant organs. Some of the beneficial bacterial taxa enriched in the diseased plants were also identified in networks, they showed an antagonistic relationship with Fusarium, suggesting a potential for these bacteria to be used in biologically based control strategies against rot disease. These insights could prove invaluable for the development of biocontrol agents aimed at combating this plant ailment. These findings significantly advance our understanding of saffron-microbiome interactions and could provide fundamental and important data for improving saffron yield and quality in the process of sustainable development.
由镰刀菌引起的腐烂病对藏红花(Crocus sativus L.)的生长构成了巨大威胁,对产量和质量都造成了严重损害。要优化产量和质量,就必须深入研究藏红花腐烂病的根本原因。现有的预防和治疗方法对球茎和自然环境造成了有害影响。因此,寻求生物防治剂等有效且环保的方法已成为当务之急。根瘤微生物和藏红花之间微生物群落分布的差异是揭示腐烂病根本原因的基础性探索。研究人员收集了来自不同藏红花器官和根瘤土壤的样本,并使用 16S rRNA 和 ITS 基因测序方法解读了微生物群落的测序数据。这有助于深入研究健康和患病藏红花植株中微生物的组成和变化。研究结果表明,腐烂病降低了藏红花中微生物的丰度和多样性,与细菌群落相比,真菌共生网络的稳定性较差,其群落对腐烂病更为敏感。镰刀菌是染病样本中的主要菌属,分别占染病叶片和球茎群落的 99.19% 和 89.77%。与其他植物器官相比,茎秆和叶片更容易受到感染。病株中富集的一些有益细菌类群也在网络中被发现,它们与镰刀菌之间存在拮抗关系,这表明这些细菌有可能被用于以生物为基础的腐烂病防治策略中。这些见解对于开发旨在防治这种植物病害的生物控制剂来说可能是非常有价值的。这些发现极大地推动了我们对藏红花-微生物组相互作用的理解,并为在可持续发展过程中提高藏红花的产量和质量提供了重要的基础数据。
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引用次数: 0
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Annals of Microbiology
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