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Molecular epidemiology of human rhinovirus from clinical cases of Dibrugarh, Assam, India 印度阿萨姆邦迪布鲁加尔邦临床病例中人鼻病毒的分子流行病学研究
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-21 DOI: 10.1016/j.ijmmb.2025.101027
Mandakini Das , Biswajyoti Borkakoty , Nargis K. Bali , Neelanjana Sarmah , Aniruddha Jakharia , Rahul Hazarika , Chandrakanta Bhattacharya , Aktarul Islam Siddique , Kishore Sarma , Kimmi Sarmah , Harpreet Kaur

Purpose

Human rhinovirus (HRV), a member of the Enterovirus genus of the Picornaviridae family is a major respiratory pathogen and the leading cause of upper respiratory tract infections. Given the limited information on HRV prevalence and molecular epidemiology in Northeast India, this study investigated circulating HRV strains in the region from 2015 to 2018.

Methods

Nasopharyngeal and throat swab samples were collected and RNA was extracted for HRV detection using qRT-PCR. HRV-positive samples were subjected to bidirectional Sanger sequencing targeting the 549 bp VP4/VP2 region. Obtained sequences were aligned and analyzed phylogenetically using bioinformatics tools to determine genotype distribution and genetic diversity.

Results

Among 2642 cases, 354 (13.3 %) tested positive for HRV. HRV-C was the predominant species (48.7 %), followed by HRV-A (38.4 %) and HRV-B (7.6 %). HRV infection was significantly associated with lower respiratory symptoms such as cough (p < 0.001) and breathlessness (p < 0.026). The study identified 27 different HRV genotypes in the 39 sequenced samples, with HRV-C15 being the most common (9/39) overall and associated with disease severity (p = 0.003). Seasonality analysis indicated peak HRV circulation between August and November (48.8 %, 173/354), with the lowest detected in June–July (14.1 %). HRV-C was more frequently observed in severe acute respiratory infection (SARI) cases and demonstrated the highest heterogeneity, with an intra-species nucleotide mean p-distance of 24.0 %.

Conclusion

In conclusion, this study presents the first report on the prevalence of human rhinovirus (HRV) among influenza-like illness (ILI) cases in Dibrugarh, Assam, India. HRV-C exhibited distinct epidemiological characteristics compared to HRV-A and HRV-B strains. Molecular epidemiological analysis revealed notable nucleotide variation in the VP4/VP2 region, with HRV-C15 emerging as the predominant genotype associated with increased disease severity. Further research involving larger sample sizes and detailed clinical follow-up is essential to better understand the genotype distribution and genetic diversity of HRV strains circulating in the region.
目的:人鼻病毒(HRV)是小核糖核酸病毒科肠病毒属的一员,是一种主要的呼吸道病原体,是上呼吸道感染的主要原因。鉴于印度东北部HRV患病率和分子流行病学信息有限,本研究调查了2015年至2018年该地区流行的HRV菌株。方法:采集鼻咽和咽拭子标本,提取RNA,采用qRT-PCR检测HRV。hrv阳性样本针对549 bp VP4/VP2区域进行双向Sanger测序。利用生物信息学工具对获得的序列进行比对和系统发育分析,以确定基因型分布和遗传多样性。结果:2642例中,HRV阳性354例(13.3%)。HRV-C是优势种(48.7%),其次是HRV-A(38.4%)和HRV-B(7.6%)。HRV感染与咳嗽等下呼吸道症状显著相关(结论:本研究首次报道了印度阿萨姆邦迪布鲁加尔省流感样疾病(ILI)病例中人鼻病毒(HRV)的流行情况。与HRV-A和HRV-B株相比,HRV-C株具有明显的流行病学特征。分子流行病学分析显示VP2/VP4区域的核苷酸显著变异,HRV-C15成为与疾病严重程度增加相关的主要基因型。为了更好地了解该地区流行的HRV毒株的基因型分布和遗传多样性,需要开展更大样本量和详细临床随访的进一步研究。
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引用次数: 0
Out of Sight, Should not be out of mind: A perplexing case of Malaria 眼不见,心不应忘:一个令人困惑的疟疾病例。
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-21 DOI: 10.1016/j.ijmmb.2025.101028
Shilpi Saxena , Reena Das , Sumeeta Khurana , Saleem Amjad Mirza , Kamal Deep Joshi , Harleen Kaur
Malaria diagnosis is often difficult in cases with low parasitaemia and atypical presentations. We report a 30-year-old male with high-grade fever, chills, and vomiting. At admission, he was afebrile, pale, and had progressive splenomegaly. Despite extensive investigations, including multiple peripheral blood smears and malaria rapid diagnostic tests, results were negative. Bone marrow examination revealed rare red blood cells with Plasmodium spp., confirmed by PCR from the marrow aspirate slide. He completely recovered after treatment with Artemether-Lumefantrine and Primaquine. This case underscores the value of bone marrow microscopy and PCR in diagnosing malaria in patients with unexplained cytopenias and splenomegaly.
在低寄生虫血症和非典型表现的病例中,疟疾诊断往往很困难。我们报告一名30岁男性患者出现高热、寒战和呕吐。入院时,他发热,脸色苍白,并有进行性脾大。尽管进行了广泛的调查,包括多次外周血涂片和疟疾快速诊断测试,但结果均为阴性。骨髓检查发现罕见的带有疟原虫的红细胞,经骨髓吸片PCR证实。经甲醚-氨苯曲明和伯氨喹治疗后完全康复。本病例强调了骨髓显微镜和PCR在诊断不明原因的细胞减少和脾肿大患者的疟疾中的价值。
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引用次数: 0
Rational test selection in immunology laboratory: Investigating the utility of repeated antinuclear antibody tests 免疫学实验室合理试验选择:探讨重复抗核抗体试验的效用
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-09 DOI: 10.1016/j.ijmmb.2025.101035
Emrah Salman

Background

The primary reason for increased lab use is inappropriate or needless test requests. Our study examined the benefits of repeated antinuclear antibody (ANA) testing and the reasons for ANA test requests in accordance with reasonable test selection and inappropriate scenarios.

Methods

We examined 2.5 years of data from a Turkish tertiary hospital in this retrospective cohort analysis. ANA and other autoimmune test data and clinical information of all patients whose ANA result changed from negative to positive on repeat testing were gathered from the hospital record system.

Results

44,341 individuals had 51,959 ANA tests between February 2019 and June 2021. ANA tests were positive in 7551 (17 %) of 44,341 patients and 9303 (17.9 %) of 51,959 tests. On 14.6 % (7618 out of 51,959) of tests requested and 13.2 % (5891 out of 44,341) of patients, repeat tests were performed. Of the 5891 patients retested, 171 were initially negative but later positive. A minority (3.7 %) of initially negative ANA patients experienced a change to a titer of ≥1:100 in our 2.5-year investigation. A novel ANA associated rheumatic disease (AARD) was detected in 17 patients. The new positive ANA test had a positive predictive value of 15.1 % following an initially negative ANA test.

Conclusions

It is common to repeat ANA testing. ANA tests that yielded negative results in the beginning frequently repeat without change. Repetition had no effect on clinical prediction of AARD. Repeat ANA testing in hospital patients is ineffective rather than useful.
实验室使用增加的主要原因是不适当或不必要的测试要求。本研究探讨了重复抗核抗体(ANA)检测的益处,以及在合理的检测选择和不适当的情况下要求进行ANA检测的原因。方法回顾性队列分析了土耳其一家三级医院2.5年的数据。收集医院档案系统中所有重复检测ANA由阴性变为阳性的患者的ANA及其他自身免疫检测数据和临床信息。结果在2019年2月至2021年6月期间,44,341人进行了51,959次ANA测试。44,341例患者中有7551例(17%)ANA检测阳性,51,959例患者中有9303例(17.9%)ANA检测阳性。14.6%(51,959人中有7618人)和13.2%(44341人中有5891人)的患者进行了重复检查。在重新检测的5891名患者中,171名患者最初呈阴性,但后来呈阳性。在我们为期2.5年的调查中,少数(3.7%)最初阴性的ANA患者的滴度变化为≥1:100。在17例患者中发现了一种新型的ANA相关风湿病(AARD)。新的阳性ANA试验在最初的阴性ANA试验后具有15.1%的阳性预测值。结论重复ANA检测较为常见。一开始产生阴性结果的ANA测试经常重复而没有变化。重复对AARD的临床预测无影响。在医院患者中重复ANA检测是无效的,而不是有用的。
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引用次数: 0
A molecular snapshot of clinical extra-intestinal Escherichia coli strains in South India – Virulence factors, phylogrouping and resistance trends 南印度临床肠外大肠杆菌菌株的分子快照-毒力因素,系统分组和耐药趋势。
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-19 DOI: 10.1016/j.ijmmb.2025.101024
Thripthi Ananda , Chiranjay Mukhopadhyay

Introduction

E. coli is a frequently encountered clinical pathogen, and periodic monitoring of antimicrobial resistance and virulence profiles is crucial for defining roadmaps for both infection prevention and control practices.

Objective

We aimed to compare the proportions of key phylogenetic groups, virulence associated genes (VAGs), and antimicrobial susceptibility (AST) patterns of E. coli isolated from various clinical samples and compare expression levels of key VAGs in patients with uncomplicated UTI versus those with UTI + bacteraemia in a tertiary-care hospital in South India.

Methods

Clinical E. coli isolates, confirmed using the MALDI-TOF MS, and satisfying the National Healthcare Safety Network(NHSN) criteria for infections were included. Phylogenetic grouping and VAGs detection were performed using multiplex-PCR and targeted gene expression was carried out using quantitative RT-qPCR. AST was determined using VITEK 2 system.

Results

The included 288E. coli isolates (144 from bacteraemia and non-bacteraemia cases each) predominately showed phylogroup B2 (52 %), followed by D (23 %), and most prevalent virulence genes were chuA (74.7 %), fimH(63.3 %), traT(63.2 %), and kpsMTII(54.2 %). fimH, fyuA, and hlyD were significantly associated with bacteraemia, and gene expression of these genes and the analysis demonstrated that hlyD expression was significantly higher (p = 0.012) in UTI + bacteraemia patients when compared to patients with uncomplicated UTI. Phylogroup B2 carried the highest median number of VAGs (7), followed by D (6). Highest susceptibility was towards tigecycline (99.7 %), followed by amikacin (91.7 %) and meropenem (90.0 %).

Conclusion

We focused on prevalent virulent genes and their expression, leading to bacteraemia, providing a comprehensive overview of an existing concern. Focusing on bacterial gene expression along with integrated surveillance of antimicrobial resistance helps in designing further research so that strategies can be planned that will later help in early risk stratification and informed clinical decision-making to prevent severe complications including secondary bacteraemia and other severe patient morbidities.
简介:大肠杆菌是一种常见的临床病原体,定期监测抗菌素耐药性和毒力谱对于确定感染预防和控制实践的路线图至关重要。目的:我们旨在比较从不同临床样本中分离的大肠杆菌的关键系统发育群、毒力相关基因(VAGs)和抗菌敏感性(AST)模式的比例,并比较印度南部一家三级医院中无并发症尿路感染患者和尿路感染+菌血症患者关键VAGs的表达水平。方法:纳入经MALDI-TOF MS确证并符合国家医疗安全网络(NHSN)感染标准的临床分离的大肠杆菌。采用多重pcr进行系统发育分组和VAGs检测,采用定量RT-qPCR进行靶向基因表达。AST采用VITEK 2系统测定。结果:288株大肠杆菌(菌血症和非菌血症各144株)以系统群B2(52%)为主,其次是D(23%),常见的毒力基因为chuA(74.7%)、fimH(63.3%)、traT(63.2%)和kpsMTII(54.2%)。fimH、fyuA和hlyD与菌血症有显著相关性,分析表明UTI+菌血症患者的基因表达和hlyD的表达均显著高于单纯UTI患者(p = 0.012)。系统类群B2中位VAGs数最多(7个),D次之(6个)。对替加环素的敏感性最高(99.7%),其次是阿米卡星(91.7%)和美罗培南(90.0%)。结论:我们关注的是导致菌血症的流行毒力基因及其表达,提供了对现有问题的全面概述。关注细菌基因表达以及对抗菌素耐药性的综合监测有助于设计进一步的研究,以便制定策略,随后有助于早期风险分层和知情的临床决策,以预防严重并发症,包括继发性菌血症和其他严重的患者发病率。
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引用次数: 0
Revisiting clinicomycological and immunological aspects of fungal rhinosinusitis during COVID-19 pandemic 重新审视COVID-19大流行期间真菌性鼻窦炎的临床菌学和免疫学方面。
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-10 DOI: 10.1016/j.ijmmb.2025.101036
Mohan Vashistha , Malini R. Capoor , Geetika Khanna , Anita Rani , Neena Chaudhary

Background and objectives

To determine the relation between disease spectrum, etiology and immunological markers in fungal rhinosinusitis (FRS).

Material and methods

Sinus and nasal tissue samples were collected by diagnostic nasal endoscopy and were processed as per standard mycological procedure for microscopy, culture and histopathological examination (HPE). Total IgE, serum IL-6, IL-10, TNF-α levels were detected by Enzyme linked immunosorbent assay.

Results

Out of 148 samples, 70 % were diagnosed as FRS. The most common comorbid condition was COVID-19 infection 46.9 %. The most common predisposing factor was use of steroid therapy 46.9 %. Nasal obstruction 62.2 % was the most common clinical feature but headache (p value 0.002) and eye discharge were statistically significant (p value 0.005). In this study Pottasium hydroxide (KOH) mount revealed findings in 84.69 % patients. KOH, Histopathological examination (HPE) and fungal culture in combination revealed findings in 62.2 % cases. Rhizopus arrhizus 27.6 % was the most common isolate Aspergillus flavus and Rhizopus arrhizus were statistically significant (p value 0.003, 0.026 respectively). In this study IL-6 59.2 % was the most common serological marker raised. Paranasal sinus (PNS) imaging revealed that 100 % of the patients had single or multiple sinus involvement and maxillary sinus (p value 0.038) was significantly associated. Acute invasive fungal rhinosinusitis 75.5 % was the most common type of FRS. In this study mortality was 17.34 %.

Conclusion

FRS is an important emerging public health problem and a cause of mortality and morbidity, particularly in immunocompromised patients. Furthermore, in the current scenario of the COVID pandemic, FRS has become more fatal and an entity of immediate and grave concern than ever before. Early identification in suspected cases with predisposing factors and early intervention is crucial for the outcome of FRS cases.
背景与目的:探讨真菌性鼻窦炎(FRS)的病谱、病因和免疫学指标之间的关系。材料与方法:诊断性鼻内窥镜采集鼻窦和鼻腔组织标本,按标准真菌学程序进行镜检、培养和组织病理学检查(HPE)。采用酶联免疫吸附法检测总IgE、血清IL-6、IL-10、TNF-α水平。结果:148份样本中,诊断为FRS的占70%,最常见的合并症为COVID-19感染,占46.9%。最常见的诱发因素是使用类固醇治疗(46.9%)。鼻塞为62.2%,头痛(p值0.002)和流涕(p值0.005)为最常见的临床特征。在本研究中,84.69%的患者发现氢氧化钾(KOH)支架。KOH、组织病理学检查(HPE)和真菌培养联合检查62.2%。黄曲霉和阿根霉最常见的分离物为27.6% (p值分别为0.003、0.026)。在本研究中,IL-6是最常见的血清标志物,升高率为59.2%。副鼻窦(PNS)影像学显示100%的患者有单一或多个鼻窦受累,上颌窦受累(p值0.038)显著相关。急性侵袭性真菌性鼻窦炎是最常见的FRS类型,占75.5%,死亡率为17.34%。结论:FRS是一个重要的新出现的公共卫生问题和死亡率和发病率的原因,特别是在免疫功能低下的患者。此外,在COVID大流行的当前情况下,FRS变得比以往任何时候都更加致命,并成为一个迫切和严重关切的实体。早期发现疑似病例的易感因素和早期干预对FRS病例的预后至关重要。
{"title":"Revisiting clinicomycological and immunological aspects of fungal rhinosinusitis during COVID-19 pandemic","authors":"Mohan Vashistha ,&nbsp;Malini R. Capoor ,&nbsp;Geetika Khanna ,&nbsp;Anita Rani ,&nbsp;Neena Chaudhary","doi":"10.1016/j.ijmmb.2025.101036","DOIUrl":"10.1016/j.ijmmb.2025.101036","url":null,"abstract":"<div><h3>Background and objectives</h3><div>To determine the relation between disease spectrum, etiology and immunological markers in fungal rhinosinusitis (FRS).</div></div><div><h3>Material and methods</h3><div>Sinus and nasal tissue samples were collected by diagnostic nasal endoscopy and were processed as per standard mycological procedure for microscopy, culture and histopathological examination (HPE). Total IgE, serum IL-6, IL-10, TNF-α levels were detected by Enzyme linked immunosorbent assay.</div></div><div><h3>Results</h3><div>Out of 148 samples, 70 % were diagnosed as FRS. The most common comorbid condition was COVID-19 infection 46.9 %. The most common predisposing factor was use of steroid therapy 46.9 %. Nasal obstruction 62.2 % was the most common clinical feature but headache (<em>p</em> value 0.002) and eye discharge were statistically significant (<em>p</em> value 0.005). In this study Pottasium hydroxide (KOH) mount revealed findings in 84.69 % patients. KOH, Histopathological examination (HPE) and fungal culture in combination revealed findings in 62.2 % cases. <em>Rhizopus arrhizus</em> 27.6 % was the most common isolate <em>Aspergillus flavus</em> and <em>Rhizopus arrhizus</em> were statistically significant (<em>p</em> value 0.003, 0.026 respectively). In this study IL-6 59.2 % was the most common serological marker raised. Paranasal sinus (PNS) imaging revealed that 100 % of the patients had single or multiple sinus involvement and maxillary sinus (<em>p</em> value 0.038) was significantly associated. Acute invasive fungal rhinosinusitis 75.5 % was the most common type of FRS. In this study mortality was 17.34 %.</div></div><div><h3>Conclusion</h3><div>FRS is an important emerging public health problem and a cause of mortality and morbidity, particularly in immunocompromised patients. Furthermore, in the current scenario of the COVID pandemic, FRS has become more fatal and an entity of immediate and grave concern than ever before. Early identification in suspected cases with predisposing factors and early intervention is crucial for the outcome of FRS cases.</div></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":"59 ","pages":"Article 101036"},"PeriodicalIF":1.3,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145742540","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diagnostic accuracy of Xpert MTB/RIF Ultra for abdominal tuberculosis in a tertiary care setting in North India 专家MTB/RIF Ultra在印度北部三级医疗机构诊断腹部结核病的准确性。
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-12 DOI: 10.1016/j.ijmmb.2025.101008
Anuj Pathak , Reena Raveendran , Jaswinder Kaur Oberoi , Chand Wattal , Anil Arora , Vikas Singla

Background

Abdominal tuberculosis (TB) poses diagnostic difficulties due to its vague symptoms and low bacterial load. Culture, the gold standard, is limited by a prolonged turnaround time of up to eight weeks. Xpert MTB/RIF Ultra (Xpert Ultra), a rapid, automated molecular test, can detect Mycobacterium tuberculosis and rifampicin resistance in under two hours. This study evaluated the diagnostic accuracy of Xpert Ultra for abdominal TB using both culture and a composite reference standard (CRS), and assessed its agreement in rifampicin resistance detection with phenotypic and genotypic drug susceptibility testing (DST).

Methods

A prospective observational study was conducted from September 2019 to March 2021 at a tertiary care centre in North India. Adults with clinical and radiological features of abdominal TB were enrolled. Relevant abdominal samples were collected and tested using smear, culture (BACTEC MGIT 960), Xpert Ultra, histopathology, and clinical response. Rifampicin resistance was confirmed using MGIT 960 and GenoType MTBDRplus.

Results

Of 176 eligible patients, 144 were enrolled, yielding 152 abdominal samples: lymph node aspirates (52%), biopsies (42.8%), pus/aspirates (3.3%), and ascitic/omental fluids (2%). Xpert Ultra showed 84% diagnostic accuracy against CRS and 75% against culture. Rifampicin resistance detection showed 100% concordance with both phenotypic and genotypic DST.

Conclusion

Xpert Ultra offers high diagnostic accuracy and excellent concordance in rifampicin resistance detection for abdominal TB. Its speed and reliability make it a valuable diagnostic tool in high-burden settings.
背景:腹部结核(TB)由于其症状模糊和细菌负荷低而造成诊断困难。文化作为黄金标准,受到长达8周的长时间周转时间的限制。Xpert MTB/RIF Ultra (Xpert Ultra)是一种快速、自动化的分子检测方法,可在两小时内检测出结核分枝杆菌和利福平耐药性。本研究通过培养和综合参考标准(CRS)评估Xpert Ultra对腹部结核的诊断准确性,并评估其在利福平耐药检测与表型和基因型药敏试验(DST)的一致性。方法:2019年9月至2021年3月在印度北部的一家三级保健中心进行了一项前瞻性观察研究。有腹部结核临床和放射学特征的成年人被纳入研究。收集相关腹部样本,并使用涂片、培养(BACTEC MGIT 960)、Xpert Ultra、组织病理学和临床反应进行检测。使用MGIT 960和基因型MTBDRplus确认利福平耐药。结果:在176名符合条件的患者中,144名入组,获得152份腹部样本:淋巴结抽吸(52%),活检(42.8%),脓液/抽吸(3.3%)和腹水/大网膜液体(2%)。Xpert Ultra对CRS的诊断准确率为84%,对culture的诊断准确率为75%。利福平耐药检测结果与表型和基因型DST的一致性均为100%。结论:Xpert Ultra对腹部结核利福平耐药检测具有较高的诊断准确性和良好的一致性。它的速度和可靠性使其成为高负荷环境中有价值的诊断工具。
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引用次数: 0
Emergence and clonal transmission of Elizabethkingia meningoseptica in adult and paediatric intensive care units: An integrated clinical, microbiological, and genomic analysis “成人和儿科重症监护病房中伊丽莎白脑膜炎败血症的出现和克隆传播:综合临床、微生物学和基因组分析”。
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-01 DOI: 10.1016/j.ijmmb.2025.101032
Debasish Biswal , Sharmila Sengupta , Ripenmeet Salhotra , Pankhuri Kumari , Maninder Dhaliwal , Sadia Khan , Aayush Chawla , Veena Raghunathan , Sandeep Mangla
Elizabethkingia meningoseptica is an emerging nosocomial pathogen with complex antimicrobial resistance. We conducted a retrospective study in intensive care units (August 2022–December 2024) involving thirteen patients (ten adults, three paediatric). Universal resistance to piperacillin/tazobactam, aminoglycosides but susceptibility to minocycline was observed. Environmental sampling revealed contamination in water outlets and sink holes. Whole genome sequencing demonstrated clonal relationships between clinical and environmental isolates, confirming nosocomial transmission. Neurological complications were significantly associated with mortality. Following targeted interventions including enhanced disinfection and thermal water flushing, no new cases occurred during three-month follow-up. This study highlights environmental surveillance and integrated infection control importance.
伊莉莎白菌脑膜炎败血症是一种具有复杂抗菌素耐药性的新出现的医院病原体。我们在重症监护室进行了一项回顾性研究(2022年8月至2024年12月),涉及13名患者(10名成人,3名儿科)。普遍对哌拉西林/他唑巴坦、氨基糖苷类耐药,但对米诺环素敏感。环境抽样显示,出水口和污水坑受到污染。全基因组测序显示临床和环境分离株之间存在克隆关系,证实了医院传播。神经系统并发症与死亡率显著相关。经过有针对性的干预措施,包括加强消毒和热水冲洗,在三个月的随访期间没有发生新的病例。本研究强调了环境监测和综合感染控制的重要性。
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引用次数: 0
Fulminant Pneumocystis jirovecii pneumonia presenting as multi-organ dysfunction syndrome in an immunocompetent host 在免疫功能正常的宿主中表现为多器官功能障碍综合征的暴发性肺囊虫肺炎
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-12-10 DOI: 10.1016/j.ijmmb.2025.101037
Debasish Biswal , Arupparna Sengupta , Mohit Sharma , Bijay Ranjan Mirdha , Aayush Chawla , Rohit Kumar Garg , Sadia Khan , Anubhav Pandey , Sharmila Sengupta
Present case describes an apparently healthy adult who developed severe Pneumocystis jirovecii pneumonia (PJP) leading to multiple organ dysfunction syndrome. The patient presented with month-long fever, fatiguability and recent onset dyspnoea, subsequently developing acute respiratory distress syndrome (ARDS), acute kidney injury and haematological complications. Definitive diagnosis was made through microscopic examination of P.jirovecii cysts stained by Grocott Gomori Methenamine Silver (GMS) and positive PCR assay of broncho-alveolar lavage fluid. This case highlights the evolving spectrum of PJP manifestations and emphasizes the need for early diagnosis and appropriate management in apparently immunocompetent hosts.
本病例描述了一个表面上健康的成年人发展成严重的肺囊虫肺炎(PJP)导致多器官功能障碍综合征。患者表现为长达一个月的发热、疲劳和近期发作的呼吸困难,随后出现急性呼吸窘迫综合征(ARDS)、急性肾损伤和血液学并发症。通过Grocott Gomori Methenamine Silver (GMS)染色镜检和支气管肺泡灌洗液PCR阳性检测,明确诊断p.j roveci囊肿。本病例强调了PJP表现谱的演变,并强调了在明显免疫功能正常的宿主中早期诊断和适当治疗的必要性。
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引用次数: 0
Outbreak of Burkholderia cepacia bacteremia consequent to contaminated ultrasound gel-a report from a tertiary care centre in South Tamilnadu, India 受污染的超声凝胶导致的洋葱伯克霍尔德菌血症暴发——来自印度南泰米尔纳德邦一个三级保健中心的报告。
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-28 DOI: 10.1016/j.ijmmb.2025.101033
G. Vithiya , V. Mangayarkarasi
We report an outbreak of Burkholderia cepacia bacteremia in a cardiothoracic surgery intensive care unit. Four cases of bloodstream infections were reported between August 16, 2024 and August 31, 2024. Microbiological surveillance of clean and sterile material from the unit revealed growth of B. cepacia from opened and sealed ultrasound gel bottles. Further cultures acquired from ultrasound gel containers from other units also grew B. cepacia and hence displaced by single use sterile gel. The outbreak was regarded terminated by the first week of September 2024 as no additional cases were described.
我们报告在心胸外科重症监护病房爆发的洋葱伯克氏菌菌血症。在2024年8月16日至8月31日期间报告了4例血液感染病例。对来自该单位的清洁和无菌材料的微生物监测显示,从打开和密封的超声凝胶瓶中生长的洋葱芽孢杆菌。从其他单位的超声凝胶容器中获得的进一步培养物也生长了洋葱芽孢杆菌,因此用一次性无菌凝胶代替。由于没有报告新的病例,疫情被认为在2024年9月的第一周结束。
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引用次数: 0
Molecular characterisation of fosfomycin resistant Enterococci faecalis isolated from a tertiary care medical hospital in northern India 从印度北部一家三级医疗医院分离的耐磷霉素粪肠球菌的分子特征
IF 1.3 4区 医学 Q4 IMMUNOLOGY Pub Date : 2026-01-01 Epub Date: 2025-11-19 DOI: 10.1016/j.ijmmb.2025.101022
Anjum Ara Mir, Sayim Wani, Nargis Bali, Bisma Ahad, Masooma Showkat, Aarifa Bashir

Purpose

To evaluate the in-vitro activity of fosfomycin in urinary isolates of Enterococcus faecalis and look for the molecular mechanisms responsible for resistance to this antibiotic.

Methods

E. faecalis isolates recovered from urine samples were processed for the presence of genes encoding the FOS modifying enzymes, fosA, fosB, fosC, fosX and murA. DNA was extracted using QIAamp DNA Mini kit. Conventional PCR using forward and reverse primers targeting the five genes was carried out. The amplified products were electrophoresed and visualized in a gel documentation system. Antimicrobial susceptibility testing was done by disc diffusion method.

Results

A total of 274 isolates of E. faecalis isolates were part of our study out of which 57 (20.8 %) were FOS resistant. Slightly more number of FOS resistant isolates were recovered from female patients, 30 (52.6 %) and from patients in the age group of >39 yrs. Majority of the FOS resistant isolates were recovered from patients attending the OPD. Vancomycin resistance was seen in 69 (25.2 %) E. faecalis isolates. fosB was was the most common gene, present in 42 (73.7 %) isolates and murA was present in 15 (26.3 %) isolates of E. faecalis. Furthermore all the FOS resistant, vancomycin resistant isolates harboured the fosB gene (n = 26).

Conclusion

To our knowledge this study is the first to explore FOS resistance in E. faecalis isolates from this part of the country. Increased resistance to FOS as compared to what has been reported previously calls for strict implementation of infection control protocols as well as heightened surveillance studies.
目的:评价尿路分离的粪肠球菌对磷霉素的体外活性,探讨其耐药的分子机制。方法:对尿液中分离的粪肠球菌进行FOS修饰酶基因fosA、fosB、fosC、fox和murA的检测。采用QIAamp DNA Mini试剂盒提取DNA。对这5个基因分别采用正、反向引物进行常规PCR。扩增产物在凝胶记录系统中电泳和可视化。药敏试验采用纸片扩散法。结果:本研究共分离到274株粪肠球菌,其中57株(20.8%)对FOS耐药。从女性患者中分离出的FOS耐药菌株数量略多,为30株(52.6%),从bb0 ~ 39岁年龄组的患者中分离出FOS耐药菌株。大多数FOS耐药分离株是从门诊就诊的患者中恢复的。69株(25.2%)粪肠球菌对万古霉素耐药。fosB是最常见的基因,在42株(73.7%)中存在,murA在15株(26.3%)中存在。此外,所有FOS耐药、万古霉素耐药分离株均含有fosB基因(n=26)。结论:据我们所知,本研究首次探讨了该地区粪伊蚊对FOS的耐药性。与以前报告的情况相比,FOS耐药性的增加要求严格执行感染控制方案并加强监测研究。
{"title":"Molecular characterisation of fosfomycin resistant Enterococci faecalis isolated from a tertiary care medical hospital in northern India","authors":"Anjum Ara Mir,&nbsp;Sayim Wani,&nbsp;Nargis Bali,&nbsp;Bisma Ahad,&nbsp;Masooma Showkat,&nbsp;Aarifa Bashir","doi":"10.1016/j.ijmmb.2025.101022","DOIUrl":"10.1016/j.ijmmb.2025.101022","url":null,"abstract":"<div><h3>Purpose</h3><div>To evaluate the in-vitro activity of fosfomycin in urinary isolates of <em>Enterococcus faecalis</em> and look for the molecular mechanisms responsible for resistance to this antibiotic.</div></div><div><h3>Methods</h3><div><em>E. faecalis</em> isolates recovered from urine samples were processed for the presence of genes encoding the FOS modifying enzymes, <em>fosA, fosB, fosC, fosX</em> and <em>murA</em>. DNA was extracted using QIAamp DNA Mini kit. Conventional PCR using forward and reverse primers targeting the five genes was carried out. The amplified products were electrophoresed and visualized in a gel documentation system. Antimicrobial susceptibility testing was done by disc diffusion method.</div></div><div><h3>Results</h3><div>A total of 274 isolates of <em>E. faecalis</em> isolates were part of our study out of which 57 (20.8 %) were FOS resistant. Slightly more number of FOS resistant isolates were recovered from female patients, 30 (52.6 %) and from patients in the age group of &gt;39 yrs. Majority of the FOS resistant isolates were recovered from patients attending the OPD. Vancomycin resistance was seen in 69 (25.2 %) <em>E. faecalis</em> isolates. <em>fosB</em> was was the most common gene, present in 42 (73.7 %) isolates and <em>murA</em> was present in 15 (26.3 %) isolates of <em>E. faecalis</em>. Furthermore all the FOS resistant, vancomycin resistant isolates harboured the <em>fosB</em> gene (n = 26).</div></div><div><h3>Conclusion</h3><div>To our knowledge this study is the first to explore FOS resistance in <em>E. faecalis</em> isolates from this part of the country. Increased resistance to FOS as compared to what has been reported previously calls for strict implementation of infection control protocols as well as heightened surveillance studies.</div></div>","PeriodicalId":13284,"journal":{"name":"Indian Journal of Medical Microbiology","volume":"59 ","pages":"Article 101022"},"PeriodicalIF":1.3,"publicationDate":"2026-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145563836","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Indian Journal of Medical Microbiology
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