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DNA barcoding indicates the presence of unrecognized species and phylogenetic diversity within the Biatora vernalis- and B. meiocarpa- groups DNA条形码表明,在Biatora vernalis-和B. meiocarpa-群中存在未被确认的物种和系统发育多样性
Q2 Agricultural and Biological Sciences Pub Date : 2023-12-29 DOI: 10.35535/pfsyst-2023-0011
C. Printzen, H. Holien, Annina Kantelinen, Leena Myllys, Felicia Ratschow, Irina Stepanchikova, Lilith Weber, E. Timdal
The Biatora vernalis- and meiocarpa-groups comprise species with pale beige to reddish brown apothecia and 0-, rarely also 1(–3)-septate ascospores. A DNA barcoding approach based on ITS sequences shows that these two groups comprise more species and phylogenetic diversity than previously known. Specimens identified as B. vernalis, the type species of the genus, appear to be paraphyletic with regard to B. chrysantha. In addition, there is a morphologically similar species belonging to the B. meiocarpa-group and tentatively named “B. orientalis” in previous publications. Biatora subduplex has for some time been known to comprise specimens from the B. vernalis-, as well as the B. meiocarpa-group. Similar to the situation in B. vernalis, samples from the meiocarpa-clade form several subclades close to B. meiocarpa. Anatomical studies reveal subtle, but recognizable morphological differences between B. subduplex s.str. and the species in the meiocarpa-clade, but not between the subclades. Here, we describe Biatora orientalis as new to science, raise B. meiocarpa var. tacomensis to species rank and provide revised identification keys for the B. vernalis- and B. meiocarpa-groups.
Biatora vernalis-群和 meiocarpa-群包括具有淡米色至红棕色外皮和 0-(很少也有 1(-3)- septate ascospores)无隔孢子的物种。基于 ITS 序列的 DNA 条形码方法表明,这两个群包括的物种和系统发育多样性比以前已知的更多。与 B. chrysantha 相比,被鉴定为 B. vernalis(该属的模式种)的标本似乎属于旁系。此外,还有一个形态上相似的物种属于 B. meiocarpa-组,在以前的出版物中被暂时命名为 "B. orientalis"。Biatora subduplex(亚种)的标本来自 B. vernalis--以及 B. meiocarpa--类群,这已经有一段时间了。与 B. vernalis 的情况类似,meiocarpa 支系的样本也形成了几个接近于 B. meiocarpa 的亚支系。解剖学研究显示,B. subduplex s.str.与 meiocarpa 支系中的物种之间存在细微但可识别的形态差异,但亚支系之间没有差异。在此,我们描述了作为科学新发现的东方桦(Biatora orientalis),将meiocarpa变种 tacomensis提升为种,并提供了修订的B. vernalis-群和B. meiocarpa-群的鉴定钥匙。
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引用次数: 0
A taxonomic revision of the small mangrove genus Camptostemon (Malvaceae) 小红树喜树属(锦葵科)的分类修正
Q2 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.35535/pfsyst-2023-0002
I. Putu, Gede P. Damayanto, Kusuma Rahmawati, D. Nurdiansah, I. Martiansyah, I. Riastiwi, B. Broto, Y. M. Mambrasar, E. Mirmanto
The true mangrove genus Camptostemon (Malvaceae) is becoming increasingly rare. This genus can be found in the Philippines, Borneo, Sulawesi, Maluku, Papua New Guinea, and Australia. Confusion remains over the taxonomic status of Camptostemon aruensis, endemic to Aru Islands, Indonesia. Therefore, a taxonomic revision is presented. Morphological characteristics, distribution maps, an identification key, and photographs of the species are provided. Based on type and type-locality specimens from the Aru Islands, C. aruensis is found to morphologically match C. schultzii. Camptostemon aruensis is a synonym of C. schultzii. Therefore, Camptostemon consists of two species, C. philippinensis (from the Philippines, Borneo, and Sulawesi), and C. schultzii (from Maluku, Indonesian Papua, Papua New Guinea, and northern Australia). Camptostemon philippinensis and C. schultzii are found in different geographic areas and do not share the same island.
真正的红树林喜树属(锦葵科)正变得越来越罕见。这个属可以在菲律宾,婆罗洲,苏拉威西岛,马鲁古,巴布亚新几内亚和澳大利亚找到。印度尼西亚阿鲁群岛特有的喜树(Camptostemon aruensis)的分类地位仍然存在混淆。因此,提出了一种分类修订。提供了该物种的形态特征、分布图、识别密钥和照片。根据Aru群岛的模式标本和本地模式标本,发现C. aruensis在形态上与C. schultzii相匹配。喜树(Camptostemon aruensis)是C. schultzii的同义词。因此,Camptostemon由C. philippinensis(来自菲律宾、婆罗洲和苏拉威西岛)和C. schultzii(来自马鲁古、印尼巴布亚、巴布亚新几内亚和澳大利亚北部)两种组成。菲律宾喜树(Camptostemon philippinensis)和C. schultzii分布在不同的地理区域,也不在同一个岛屿上。
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引用次数: 0
In silico analysis of potential loci for the identification of Vanda spp. in the Philippines 菲律宾Vanda spp.潜在基因座的计算机分析
Q2 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.35535/pfsyst-2023-0003
Euricka Mae F. Rodriguez, Maximillian Racelis, Anna Alliah D. Calonzo, Richard F. Clemente, O. Alaijos, Christian Joseph N. Ong
Difficulties in identifying Vanda species are still encountered, and the ambiguity in its taxonomy is still unresolved. To date, the advancement in molecular genetics technology has given rise to the molecular method for plant identification and elucidation. One hundred twenty-five (125) gene sequences of Vanda species from the Philippines were obtained from the NCBI GenBank. Four of the 25 loci were further examined using MEGA 11 software for multiple sequence alignment, sequence analysis, and phylogenetic reconstruction. The indel-based and tree-based methods were combined to compute the species resolution. The result showed that ITS from the nuclear region obtained the highest species resolution with 66.67%. It was then followed by psbA-trnH, matK, and trnL-trnF from the chloroplast genome with a species resolution of 60%, 40%, and 30.77%, respectively. ITS and psbA-trnH satisfied the ideal length for DNA barcoding as they have 655 bp and 701 bp, respectively. The locus psbA-trnH was also considered to have a higher potential to discriminate Vanda species since only a few sequences were tested for ITS. Furthermore, ITS and trnL-trnF have the highest variable rate, which is 2.9%, while matK and psbA-trnH have 2% and 1.3%, respectively. This showed the nature of the unique sequences of various species. In this study, the indel-based method provided better results than the tree-based method. It will help support further DNA barcoding studies and strengthen the conservation and protection of Vanda spp. in the Philippines.
在识别Vanda物种方面仍然遇到困难,其分类学上的模糊性仍然没有解决。到目前为止,分子遗传学技术的进步已经产生了用于植物鉴定和阐明的分子方法。来自菲律宾的Vanda物种的一百二十五(125)个基因序列从NCBI GenBank获得。使用MEGA 11软件对25个基因座中的4个进行了进一步的序列比对、序列分析和系统发育重建。将基于indel和基于树的方法相结合来计算物种分辨率。结果表明,核区ITS的物种分辨率最高,为66.67%,其次是叶绿体基因组的psbA-trnH、matK和trnL-trnF,物种分辨率分别为60%、40%和30.77%。ITS和psbA-trnH分别具有655bp和701bp,满足DNA条形码的理想长度。基因座psbA-trnH也被认为具有更高的潜力来区分Vanda物种,因为只有少数序列被测试用于ITS。此外,ITS和trnL-trnF的可变率最高,为2.9%,而matK和psbA-trnH分别为2%和1.3%。这显示了不同物种独特序列的性质。在本研究中,基于indel的方法比基于树的方法提供了更好的结果。它将有助于支持进一步的DNA条形码研究,并加强菲律宾对Vanda spp.的保护和保护。
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引用次数: 0
Desmids of Gorce Mts. Geobotanical studies 格雷斯山的山志。地球植物学研究
Q2 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.35535/pfsyst-2023-0001
M. Wayda
The presented work is the first comprehensive study on the desmids of mountainous areas of the Gorce region in Poland. The Gorce Mts flora of the order Desmidiales comprises 20 genera and 247 species. The most diverse genera in the Gorce Mts are Cosmarium with 99 taxa, Closterium with 39 taxa, Staurastrum with 38 taxa and Euastrum with 17 taxa. All reported taxa are described and documented by original hand drawings and microphotographs. Environmental data with geographical coordinates are included for all studied sites. Among the recorded taxa, eight (Actinotaenium borgeanum, Actinotaenium gelidum, Actinotaenium perminutum, Cosmarium alpestre, Cosmarium dispersum, Cosmarium paragranatoides, Closterium sublaterale, Staurastrum pyramidatum) are new for the Polish flora. An important factor affecting the biodiversity of desmids in the Gorce area is human activity. In typically anthropogenic habitats, which in the study area include roads and paths, 157 species were found (63.7% of the Gorce desmid flora). Many montane species, such as Closterium pusillum and Cosmarium decedens, associated with wet moss on rocks, had secondary habitats there. A group of 21 species found only in anthropogenic habitats can be considered anthropophytes of the studied area. There are also semi-natural habitats in the form of meadows that persist only due to human activity. The situation is similar to that of vascular plants. Clearings used until the 1980s showed significantly higher species richness than clearings where grazing has been abandoned for a long time. Overall, human activity has contributed to an increase of desmid species diversity in the Gorce region.
提出的工作是第一个全面的研究在波兰戈尔斯地区山区的沙漠。该目植物区系包括20属247种。在黄山分布最广的属依次为Cosmarium(99个)、Closterium(39个)、restaurum(38个)和Euastrum(17个)。所有报告的分类群都用原始手绘和显微照片进行了描述和记录。所有研究地点的环境数据均附有地理坐标。在已记录的分类群中,8个为波兰植物区系新发现的分类群(borgeanum、Actinotaenium gelidum、Actinotaenium perminuum、alpestre、Cosmarium dispersum、Cosmarium paraganoides、Closterium sublaterale、pyramidatum)。人类活动是影响黄土高原生物多样性的重要因素。在包括道路和小路在内的典型人为生境中,共发现157种(63.7%)。许多山地物种,如Closterium pusillum和Cosmarium decedens,与岩石上的湿苔藓有关,在那里有次要栖息地。仅在人为生境中发现的一组21种物种可被认为是研究区域的人栖动物。也有半自然的栖息地,以草甸的形式存在,只是由于人类活动。这种情况与维管植物类似。在20世纪80年代之前使用的空地物种丰富度明显高于长期放弃放牧的空地。总体而言,人类活动促进了黄土高原地区黄土物种多样性的增加。
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引用次数: 0
Pisolithus albus (Sclerodermataceae), a first record from Egypt 埃及的一个首次记录
Q2 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.35535/pfsyst-2023-0004
A. Abdel-Aziz, M. Bakhit
Pisolithus albus (Basidiomycota, Sclerodermataceae) is reported here for the first time from Egypt where it was found on the Karaman Island in Sohag Governorate. It was found forming an ectomycorrhizal association with Eucalyptus occidentalis and Vachellia nilotica. The fungus was also reported near two potentially new hosts: Paspalum distichum and Dodonaea viscosa; however, the mycorrhizal connections with these two hosts is not proven. Phylogenetic analyses for the combined ITS and LSU rDNA sequences dataset placed the Egyptian specimen within the Pisolithus albus complex clade. It is described, illustrated, and phylogenetically analyzed in this article. Various hosts and locations of the taxon are reviewed.
据报道,在索哈格省的卡拉曼岛上首次发现了埃及产的黄石莲(担子菌门,硬核菌科)。发现它与西桉和尼罗海鞘形成外生菌根联合。据报道,在两个潜在的新宿主附近也发现了这种真菌:二氏Paspalum distichum和粘氏Dodonaea viscosa;然而,菌根与这两个宿主之间的联系尚未得到证实。ITS和LSU rDNA组合序列数据集的系统发育分析将埃及标本置于黄石藻复杂分支中。本文对其进行了描述、说明和系统发育分析。综述了该分类单元的各种寄主和位置。
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引用次数: 0
Book review: Kramer, W. 2023. The genus Syntrichia Brid. (Pottiaceae, Bryophyta) in the Holarctic with special consideration of North America. Nova Hedwigia, Beiheft 154, 234 pp., with 93 figures, including 63 black and white line drawings and 30 photographs in colour. Paperback, size 24 × 17 cm. Effectively published on 28 March 2023. J. Cramer in Borntraeger Science Publisher, Stuttgart, Germany. ISBN 978-3-443- 51083-1, ISSN 1438-9134. 书评:克莱默,W. 2023。合毛蝇属。(苔藓植物科)在全北极,特别考虑到北美。Nova Hedwigia, Beiheft出版社,154页,234页,共93个人物,包括63张黑白线条画和30张彩色照片。平装,尺寸24 × 17厘米。于2023年3月28日正式公布。J. Cramer, Borntraeger科学出版社,斯图加特,德国。Isbn 978-3-443- 51083-1, issn 1438-9134。
Q2 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.35535/pfsyst-2023-0005
Ryszard Ochyra
1. Brooks, J. R. & Jauregui-Lazo, J. A. 2022. Syntrichia lithophila, a fantastic new amphitropical disjunct from Oregon, United States. The Bryologist 126(2): 221–225. Google Scholar
1. 布鲁克斯,J. R.和雷吉-拉佐,J. A. 2022。嗜石合毛虫,一种产于美国俄勒冈州的奇异的新两性分离种。苔藓植物学报,26(2):221-225。谷歌学者
{"title":"Book review: Kramer, W. 2023. The genus Syntrichia Brid. (Pottiaceae, Bryophyta) in the Holarctic with special consideration of North America. Nova Hedwigia, Beiheft 154, 234 pp., with 93 figures, including 63 black and white line drawings and 30 photographs in colour. Paperback, size 24 × 17 cm. Effectively published on 28 March 2023. J. Cramer in Borntraeger Science Publisher, Stuttgart, Germany. ISBN 978-3-443- 51083-1, ISSN 1438-9134.","authors":"Ryszard Ochyra","doi":"10.35535/pfsyst-2023-0005","DOIUrl":"https://doi.org/10.35535/pfsyst-2023-0005","url":null,"abstract":"1. Brooks, J. R. & Jauregui-Lazo, J. A. 2022. Syntrichia lithophila, a fantastic new amphitropical disjunct from Oregon, United States. The Bryologist 126(2): 221–225. Google Scholar","PeriodicalId":52151,"journal":{"name":"Plant and Fungal Systematics","volume":"65 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134983384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Book review: Long, D. G. 2022. The bryophytes of the Wallich herbarium and catalogue. Acta Bryolichenologica Asiatica. Vol. 11, 104 pp., with 6 figures in colour. Paperback, size 25.0 × 17.6 cm. Effectively published on 1 June 2022. Finnish-Chinese Botanical Foundation, Lohja, Finland. ISBN: 978-952-67464-8-7. 书评:Long, d.g. 2022。沃利奇植物标本室和目录中的苔藓植物。亚洲苔藓生物学报。第11卷,104页,有6个彩色数字。平装本,尺寸25.0 × 17.6厘米。于2022年6月1日正式发布。芬兰-中国植物基金会,芬兰洛哈。ISBN: 978-952-67464-8-7。
Q2 Agricultural and Biological Sciences Pub Date : 2023-07-01 DOI: 10.35535/pfsyst-2023-0006
Ryszard Ochyra
1. Aziz, M. N. & Vohra, J. N. 2008. Pottiaceae (Musci) of India. Bishen Singh Mahendra Pal Singh, Dehra Dun, [5] + 366 pp. Google Scholar
1. 阿齐兹,m.n.和沃赫拉,j.n. 2008。印度的芥花科(芥花属)。毕申·辛格,马亨德拉·帕尔·辛格,Dehra Dun,[5] + 366页
{"title":"Book review: Long, D. G. 2022. The bryophytes of the Wallich herbarium and catalogue. Acta Bryolichenologica Asiatica. Vol. 11, 104 pp., with 6 figures in colour. Paperback, size 25.0 × 17.6 cm. Effectively published on 1 June 2022. Finnish-Chinese Botanical Foundation, Lohja, Finland. ISBN: 978-952-67464-8-7.","authors":"Ryszard Ochyra","doi":"10.35535/pfsyst-2023-0006","DOIUrl":"https://doi.org/10.35535/pfsyst-2023-0006","url":null,"abstract":"1. Aziz, M. N. & Vohra, J. N. 2008. Pottiaceae (Musci) of India. Bishen Singh Mahendra Pal Singh, Dehra Dun, [5] + 366 pp. Google Scholar","PeriodicalId":52151,"journal":{"name":"Plant and Fungal Systematics","volume":"75 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134983116","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Two rare Peltigera species new to the Canadian Arctic, P. islandica and P. lyngei 加拿大北极地区新发现的两种罕见的Peltigera物种,岛蛙和林蛙
Q2 Agricultural and Biological Sciences Pub Date : 2022-07-01 DOI: 10.35535/pfsyst-2022-0002
R. McMullin, J. Miadlikowska
Peltigera islandica and P. lyngei are rarely reported lichens. Previously, P. islandica was known from British Columbia, Estonia, and Iceland, and P. lyngei from Amchitka Island (Alaska), Gough Island (South Atlantic), Iceland, Siberia and Svalbard. Both species are reported here for the first time from the Canadian Arctic and from the second localities in North America. Peltigera lyngei is also reported for the first time from Canada. The identities of these species are confirmed morphologically, chemically, and with molecular data. Phylogenetic relationships are inferred using the ITS region. The widespread, but scattered, distribution of both species suggests that they may be underreported throughout their range.
Peltigera islandica和P.lyngei是很少报道的地衣。以前,不列颠哥伦比亚省、爱沙尼亚和冰岛都有P.islandica,Amchitka岛(阿拉斯加)、高夫岛(南大西洋)、冰岛、西伯利亚和斯瓦尔巴群岛也有P.lyngei。这两个物种都是首次从加拿大北极地区和北美第二个地区报告的。Peltigera lyngei也是首次从加拿大报道。这些物种的身份在形态、化学和分子数据上得到了证实。利用ITS区域推断系统发育关系。这两个物种分布广泛但分散,这表明它们在整个范围内可能被低估了。
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引用次数: 2
Life on top: cryptoendolithic ascomycetes and microalgae isolated from over 6000 m altitude 顶端生命:从海拔6000米以上分离出的隐石器时代子囊菌和微藻
Q2 Agricultural and Biological Sciences Pub Date : 2022-07-01 DOI: 10.35535/pfsyst-2022-0001
Agnese Cometto, Claudio G. Ametrano, L. Muggia
Rocks are among the oldest terrestrial niches hosting a multiplicity of life forms, of which diversity has been only partially uncovered. Endolithic metacommunities comprise all major groups of microorganisms, such as chemo-organotrophic, chemo-lithotrophic and phototrophic, represented by bacteria, microalgae and microfungi. Their diversity is often difficult to describe and may remain underestimated. Furthermore, knowledge about the diversity of microorganisms colonizing rocks in peculiar niches is even poorer due to the difficulty to retrieve environmental specimens. Here, we report the phylogenetic and phenotypic characterization of a few endolithic fungi and algae isolated from rock fragments collected at high elevation, i.e., on the top of two mountains over 6000 m altitude, Muztagh Ata (China) and Cerro Mercendario (Argentina). The identity of the strains was confirmed by sequencing the nuclear ITS and LSU, the plastidial rbcL loci and by morphological analysis. Three fungal strains belonging to the class Dothideomycetes and one algal strain belonging to the genus Trebouxia were isolated from Muztagh Ata, while six fungal strains belonging to the order Chaetothyriales and four algal strains belonging to the genus Myrmecia were isolated from Cerro Mercedario. The detected species diversity is discussed in an evolutionary and ecological context.
岩石是地球上最古老的生态位之一,承载着多种生命形式,其中的多样性只被部分发现。内生元群落包括所有主要的微生物类群,如化学有机营养型、化学岩石营养型和光营养型,以细菌、微藻和微真菌为代表。他们的多样性往往难以描述,而且可能仍然被低估。此外,由于难以获取环境标本,关于在特殊生态位中定植岩石的微生物多样性的知识甚至更少。在这里,我们报告了从高海拔采集的岩石碎片中分离到的一些内生真菌和藻类的系统发育和表型特征,即在海拔超过6000米的两座山的顶部,Muztagh Ata(中国)和Cerro Mercendario(阿根廷)。通过核ITS和LSU序列、质体rbcL位点和形态分析证实了菌株的身份。从Muztagh Ata分离到3株Dothideomycetes纲真菌和1株Trebouxia属藻类菌株,从Cerro Mercedario分离到6株Chaetothyriales目真菌和4株Myrmecia属藻类菌株。在进化和生态的背景下讨论了检测到的物种多样性。
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引用次数: 2
Atronectria thelotrematis (Sordariomycetes), a remarkable new pyrenomycete on Thelotrema lepadinum from Chile, with a key to the lichenicolous fungi growing on Thelotrema 一种生长在智利lepadinum上的显著的新pyrenomycates (Sordariomycetes),是生长在thelelotrema上的地衣真菌的关键
Q2 Agricultural and Biological Sciences Pub Date : 2022-01-01 DOI: 10.35535/pfsyst-2022-0004
M. Zhurbenko
Atronectria thelotrematis, a lichenicolous pyrenomycete growing on Thelotrema lepadinum, is described as new to science from Chile. The species is characterized by black perithecioid ascomata; a brown, not changing color in K and lactic acid, N+ reddish orange exciple resembling textura angularis or textura epidermoidea; 0–4-septate periphyses; a I−, K/I− hymenium with rather rare lipid droplets; the absence of distinct interascal filaments; inoperculate, unitunicate, cylindrical, 8-spored, I−, K/I− asci; and hyaline to occasionally light brown, smooth to mostly finely verruculose, 1-septate, homopolar ascospores, uniseriate in the ascus. A key to ten species of lichenicolous fungi known to occur on Thelotrema is provided.
一种生长在eleltrema lepadinum上的地衣黄螺旋菌,被描述为来自智利的新科学。该物种的特征是黑色周周炎;褐色,在K和乳酸中不变色,N+红橙色,类似角织构或表皮状织构;0-4-septate periphyses;a I -, K/I -膜,脂滴较少;不明显的片间花丝;无顶,单胞,圆柱形,8孢子,I -, K/I -;透明的到偶尔浅棕色,光滑的到大多数细疣状,1隔,同极子囊孢子,在子囊中单胚芽生。提供了已知发生在theelotrema上的十种地衣真菌的关键。
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引用次数: 0
期刊
Plant and Fungal Systematics
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